mRNA_H-paniculata_contig5775.13363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5775.13363.1
Unique NamemRNA_H-paniculata_contig5775.13363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5775.13363.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 1.440e-54
Identity = 128/234 (54.70%), Postives = 149/234 (63.68%), Query Frame = 2 
Query:    2 AGTCGFV-APSTALFRPDVNYRPYRTRIL--------RMTRSTEPKDTPYSGLPANWRAPLQRGDSVKSDEEPATVQQEERRIDMDG-GRIELQEVRTSAQVLEEVQRVGIGGVGDRRVLRKPDAPPDIGRFQTDSQRRRSLPLSKLKRVKPKRRRLIDEEEGELRPLVAKTDRESVLRGEDYWIDYREVDEKAARKEARRKAPSPDQFAQSKMRAEIVNPYKQNWILAISLGI 673
            AG CGFV AP         + R               RM  S E + TPYS LPA+WRAPL   +      E     QEE  ++ +G G  E   +RT A+VL+E  RV       R   R   APP +   QT++QRRR+LPLSKLKRVKPK+R   +EEEGE+RPLV KTDRESVLRGEDYWIDYREVD K A +EA+ KAP+PDQFAQSKM+AEIVNPYKQNWILAISL I
Sbjct:   33 AGACGFVVAPGGGAAMLQRSRRSVXXXXXXXXXXSAPRMALSEEAEATPYSELPADWRAPLPPREFKPKKGET----QEEEGVEGEGVGGAEGDGLRTPAEVLQEATRV----TPKRMQGRMAQAPPGLESLQTENQRRRALPLSKLKRVKPKKRAAKEEEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAISLAI 258
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BLAST of mRNA_H-paniculata_contig5775.13363.1 vs. uniprot
Match: K0S2D5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2D5_THAOC)

HSP 1 Score: 54.3 bits (129), Expect = 3.740e-5
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 2 
Query:  491 RESVLRGEDYWIDYREVDEKAARKEARRKAPSPDQFAQSKMRAEIVNPYKQNWILAISLGI 673
            R++V +G DYWID  E+++  AR+    K     + +Q K++AEIV PYKQNWI   SL I
Sbjct:   45 RDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWIGYFSLTI 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5775.13363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR40_ECTSI1.440e-5454.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K0S2D5_THAOC3.740e-545.90Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5775contigH-paniculata_contig5775:1676..5731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.9
Seed ortholog evalue1.3e-48
Seed eggNOG ortholog2880.D7FR40
Hectar predicted targeting categoryother localisation
EggNOG OGs2D131@1,2SGIC@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003600.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2327
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5775.13363.1prot_H-paniculata_contig5775.13363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5775 3213..5643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930626.0398662-UTR-H-paniculata_contig5775:1675..32121622930626.0398662-UTR-H-paniculata_contig5775:1675..3212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5775 1676..3212 -
1691481378.3808706-UTR-H-paniculata_contig5775:1675..32121691481378.3808706-UTR-H-paniculata_contig5775:1675..3212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5775 1676..3212 -
1622930626.114481-UTR-H-paniculata_contig5775:5643..57311622930626.114481-UTR-H-paniculata_contig5775:5643..5731Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5775 5644..5731 -
1691481378.4417632-UTR-H-paniculata_contig5775:5643..57311691481378.4417632-UTR-H-paniculata_contig5775:5643..5731Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5775 5644..5731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930626.0518458-CDS-H-paniculata_contig5775:3212..34641622930626.0518458-CDS-H-paniculata_contig5775:3212..3464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 3213..3464 -
1691481378.3963542-CDS-H-paniculata_contig5775:3212..34641691481378.3963542-CDS-H-paniculata_contig5775:3212..3464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 3213..3464 -
1622930626.0692053-CDS-H-paniculata_contig5775:3922..40221622930626.0692053-CDS-H-paniculata_contig5775:3922..4022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 3923..4022 -
1691481378.4080021-CDS-H-paniculata_contig5775:3922..40221691481378.4080021-CDS-H-paniculata_contig5775:3922..4022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 3923..4022 -
1622930626.0846384-CDS-H-paniculata_contig5775:5013..53381622930626.0846384-CDS-H-paniculata_contig5775:5013..5338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 5014..5338 -
1691481378.423236-CDS-H-paniculata_contig5775:5013..53381691481378.423236-CDS-H-paniculata_contig5775:5013..5338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 5014..5338 -
1622930626.1003013-CDS-H-paniculata_contig5775:5618..56431622930626.1003013-CDS-H-paniculata_contig5775:5618..5643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 5619..5643 -
1691481378.431676-CDS-H-paniculata_contig5775:5618..56431691481378.431676-CDS-H-paniculata_contig5775:5618..5643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5775 5619..5643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5775.13363.1

>prot_H-paniculata_contig5775.13363.1 ID=prot_H-paniculata_contig5775.13363.1|Name=mRNA_H-paniculata_contig5775.13363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MTRSTEPKDTPYSGLPANWRAPLQRGDSVKSDEEPATVQQEERRIDMDGG
RIELQEVRTSAQVLEEVQRVGIGGVGDRRVLRKPDAPPDIGRFQTDSQRR
RSLPLSKLKRVKPKRRRLIDEEEGELRPLVAKTDRESVLRGEDYWIDYRE
VDEKAARKEARRKAPSPDQFAQSKMRAEIVNPYKQNWILAISLGISECTT
KSVRANLSRSFLSPSDVSEVVAVTPTSAYLVGL*
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mRNA from alignment at H-paniculata_contig5775:1676..5731-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5775.13363.1 ID=mRNA_H-paniculata_contig5775.13363.1|Name=mRNA_H-paniculata_contig5775.13363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4056bp|location=Sequence derived from alignment at H-paniculata_contig5775:1676..5731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTGGTACGTGTGGATTCGTCGCACCCTCTACCGCATTGTTTCGCCCAG
ACGTCAACTATCGTCCATATCGTACGCGTATACTGCGGATGACCAGGAGC
ACAGAGCCCAAAGGTAGGGTGCAATATGGAGTACGAATTGAGACAAGAAG
GGCACTCTCCGATAACTTCGGCGCCGTGGTTTCCGCAAAGATAAATGGGA
CGGTTTCAACAAGGATTAGATTGGCAGTGATCCGTGTTGATTGACCCTGC
AATAATTGCAGCCAGTCTATGTAATAGCTCAGTTCTGTGTGTTGGTAAAC
ATGTAACAGGCAAAGGCAGTTAAGCACGGTAGATCATTCTGTTCGCGTGT
TCGTTCTTTCTCCCCGCACTTCCAACGCGCTTGCTTGCAGCAGACACGCC
CTACTCAGGCCTTCCCGCCAACTGGCGAGCACCATTGCAACGAGGAGATT
CTGTGAAATCAGATGAGGAACCGGCGACGGTTCAACAGGAGGAGCGCCGG
ATAGACATGGATGGTGGACGCATAGAGCTCCAGGAAGTGCGCACTTCTGC
CCAGGTGCTCGAGGAAGTACAACGTGTGGGTATTGGGGGTGTTGGTGACC
GACGAGTGTTGCGGAAACCGGACGCGCCGCCTGACATCGGGAGGTTCCAG
ACAGATAGCCAACGTCGGAGAAGCCTTCCCCTCAGTAAGCTTAAGCGCGT
CAAACCCAAGAGGCGAAGGTAAGACTTTTTGCGTGGTAGGACTGGCAAGA
ACCTTGAGGTTTCGCGTAAAAGAGTTACACATATTTTTCATAATTTAGCC
TTTTGGGACATAAACTTACGACATTTGTTCAAGTTTACATAATCACATCG
AAATGGCGATATCTCTATCTCACATCCTTGTCATACATAGCCAGTCATAA
AGTACGTGTTTAGAGTGTCATGTGTTTAGCGAAACGGTGAGATGAGCCGA
TGAAACGACCACAAAATCATGAAGGTCGACCCAACATCTTCGCGATCAAC
GGGAATTATCTAAAATTGTCTCGTACAATCTACTGTGATGGGACAAAAAC
GAAATATATATATTTAAGTGGCAGATTGCAGATCTGCATGTTGAGCGCAG
ACAGGCATCGGCAGGGTGCGGGTAGCGTGACAGCAACTGGGCGAGCAGTG
AGCAGGGGTCTTGGCTTGTAGGGGGATGTTCGGGTGTTGTATGTACGTAT
GTTGAAATGTGTAACTGAGAAGTGAAGAAGCCTTTGGTTGGGGCCTTCTA
GAGAATAAGATGGAAGCGACACAACATCATGGGACTTTTGTTGAAACAGT
ATCGTAAACAGATCATATTCTGACAGCTTTGGTCATGAAGGCGTCATGAA
TCACCCTAATAATGTGTATCATAAATGCGTCATACTTCCGCGCTTTCTTA
TCATGAGTGCGTCGTCACCCACGAATAAACCGTTAAATGAAGAAAAAACT
GTCATGAATGTTTAGAGCAGCTAAATGGTGGGAAAGCGTACACACGTCGG
ATGGATCGGATCATACACAGATCATACCCGTCATTTTTATGGGTATATCG
TCTGATCCGTACACGGTGATTTTTCCGTGCAAACCGTCCCAGGCTTTCGG
AGTGGCCTGGTAGTGGTCTCGGGTTCGTCAAACCTAATTACGTCCCTCTA
GCTTGATCGGTTCACACTGATTGTATTTTCTGCTGAATGCTGCTTAATCA
TGAGTGAAGGCTAATTGATGAAGAGGAGGGTGAGCTCCGACCGCTGGTAG
CCAAAACCGATCGTGAAAGTGTCCTTAGGGGAGAGGACTACTGGATCGAC
TACCGCGAGGTGACTGGGAGCACTCGACACACATGATCAAACAGTCGATG
CGACGATTTTGCATCGCACGTAAAAAGAGGAATAGCATAAACTTCGGGTG
TTGAGATCACTGTGTGTTTCGTTTGTCCAGAAAAAAGAGCCTTGCAACTG
TTGGCAATACTCAGCTCGTTTGGTGGGTTGAATGCTACCCTATGCTGATT
AACTGTTGGCAACAAAGGTTGTTTGCACTTGTGTTGGATCTCCATCCCCC
GTCACGCCCTCTGGTGATTTGTAGAGGAAATTTGTCGTAGCCAGTACAAA
AGTGAGAACTGAGGGTCACGAGCCTGCAGTTTTTGCCTTTGTGGCTACAA
TACTTGGCCCGGGTTGCGTCTGTTGCAAGACTGAAACTATCTCAACGCGT
CTTGTCTCTGCTGAACGTTGCCCTTCATCCGACCAACCCAAAATATGCTT
AACCTAAATACCCACAGGTCGACGAGAAGGCTGCAAGAAAAGAGGCAAGG
AGGAAAGCTCCGTCCCCTGACCAGTTTGCCCAATCCAAAATGAGGGCAGA
GATCGTCAACCCCTACAAGCAAAACTGGATCCTGGCCATTTCCCTTGGTA
TCAGTGAGTGTACAACGAAAAGTGTCCGTGCTAATCTTTCCCGGAGTTTC
CTCTCGCCATCTGATGTCTCAGAAGTTGTGGCAGTGACGCCCACATCTGC
ATATCTTGTTGGTCTGTGAGACGTGGGAACACCACAGTGTGCCTACAATA
GCGCGCGTCACTTCAATAACGGTTTGATTACAGGAGGCAAGCCAAATATA
GATGTTGCTACATTCATGAGGCTCTTTCGCCGTCGGCGTGGTCAATTCGA
TGTATAGTGACAGAAGTTTTATGGGTGCATTTCCACCCTATTGTGGTGAT
AAGACGTTGAATCAACCTTGCGCTTGATGGGTCGTTGTGTTGATTGCTCA
CGTGAGTCAAAAGGTTCGCGGAGTGTTCAACTTTTTGGACTCGGGTTTAT
CGTAGATATCTATGCCAATGGCACCGAGATGCGCACACAATTCTGTACCG
TGACCCTGTTCCTCAAGTGTTGTCAGATATATGTCGATTTAGACGAGCTA
AACCTTGTCCTCTCGTATATGCTAGGTTACAAACAGACGCTCTCTGCCAC
ATACAGCGCTGCGAATGCTCCACTTGTGCTACCACCCCCAAATTGACACC
GTGTATTACATCACTTAGGTCTCGAAAAGACCGCCAACCTTCTGGCATGA
CTTGCAGTTGAATCTAACCCTCCCTCCCCTTGAATATCCCCAACACTCCC
GCCTGTGCTGTTGCGCAGTGGCTATGGCAGGATTTATCAAGCTCAACCCT
GGGATTCTGGATGAATCTGTTATCACATTTCCCTCGGAGTTATGATTTTG
AGTCTTGCGGAAGAAGAAAATGTCGTATTCCTTGCTTGTCGTCATAGTGT
GGTGCTTGTTCGTGGATGATGCGTTTGGGTTGGATTTAATTTAAGCGTTT
TTTTTGTCTACGTAACGCCTGACAAGCAAACTTGAATGTGGTAAATAGAA
TGATTTCGTGTTTTTTTTTGTTGAACGAGATTGAATTGCAGAGACAGAGC
AAAGTACGCACATTATTTGCTGGTAGCTCCACCTATATATTTTGCTCGTG
CTGGGGGTGATGCGGTGTGATTATGTTTACGCTTGCGTTTCTATCTTGCC
AAACGTGCATATTATTAGTCGACACCCCGCAGTTGTAGTGTGGTAAGATG
ATACGGACGGGACTTTTTTACGGCCTGCCTCTCAGGAGTGTGGGGCTTTG
CATGTGTTTGCAGTGGTGCCTTGGGGAAAGGCAATGTAAGGTAGAGTCTC
ATTTTTTCTACTGGCAGATGAGCACAGGAAAAATATTGTAAAGGAGCAGT
CAGCGTAGAAGCGGGACAGGGTAGTGGTAAATAAGAAATGCAGCATTTTG
GCTTACGATCGAAGGCGTTTCTCGCCCTTTGGTTGAATTTGACTGTTATT
ACTGCGTGCCTAGAGGGGCACTCTGTGCCATGTGTGTCTCCTATTGCAGC
CACACACACGCCGTTCAACACAATACATCAACCCATTTAGAATATTACTT
CTGACAGTCAAAACACACATTCGCTAACGGTCAGTGTGTAATGACGAATA
CGTCGATAGAGTGCCACAGCCAGGGGGCAAAGGGGGGCGTTTTTTCATGG
CGTGTGGGGTATATATCAGATTTATGATTATCAAGCCCTCCACAGCTGGT
TAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5775:1676..5731-

>mRNA_H-paniculata_contig5775.13363.1 ID=mRNA_H-paniculata_contig5775.13363.1|Name=mRNA_H-paniculata_contig5775.13363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig5775:1676..5731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGGAGCACAGAGCCCAAAGATGACCAGGAGCACAGAGCCCAAAG
ACACGCCCTACTCAGGCCTTCCCGCCAACTGGCGAGCACCATTGCAACGA
GGAGATTCTGTGAAATCAGATGAGGAACCGGCGACGGTTCAACAGGAGGA
GCGCCGGATAGACATGGATGGTGGACGCATAGAGCTCCAGGAAGTGCGCA
CTTCTGCCCAGGTGCTCGAGGAAGTACAACGTGTGGGTATTGGGGGTGTT
GGTGACCGACGAGTGTTGCGGAAACCGGACGCGCCGCCTGACATCGGGAG
GTTCCAGACAGATAGCCAACGTCGGAGAAGCCTTCCCCTCAGTAAGCTTA
AGCGCGTCAAACCCAAGAGGCGAAGACACGCCCTACTCAGGCCTTCCCGC
CAACTGGCGAGCACCATTGCAACGAGGAGATTCTGTGAAATCAGATGAGG
AACCGGCGACGGTTCAACAGGAGGAGCGCCGGATAGACATGGATGGTGGA
CGCATAGAGCTCCAGGAAGTGCGCACTTCTGCCCAGGTGCTCGAGGAAGT
ACAACGTGTGGGTATTGGGGGTGTTGGTGACCGACGAGTGTTGCGGAAAC
CGGACGCGCCGCCTGACATCGGGAGGTTCCAGACAGATAGCCAACGTCGG
AGAAGCCTTCCCCTCAGTAAGCTTAAGCGCGTCAAACCCAAGAGGCGAAG
GCTAATTGATGAAGAGGAGGGTGAGCTCCGACCGCTGGTAGCCAAAACCG
ATCGTGAAAGTGTCCTTAGGGGAGAGGACTACTGGATCGACTACCGCGAG
GCTAATTGATGAAGAGGAGGGTGAGCTCCGACCGCTGGTAGCCAAAACCG
ATCGTGAAAGTGTCCTTAGGGGAGAGGACTACTGGATCGACTACCGCGAG
GTCGACGAGAAGGCTGCAAGAAAAGAGGCAAGGAGGAAAGCTCCGTCCCC
TGACCAGTTTGCCCAATCCAAAATGAGGGCAGAGATCGTCAACCCCTACA
AGCAAAACTGGATCCTGGCCATTTCCCTTGGTATCAGTGAGTGTACAACG
AAAAGTGTCCGTGCTAATCTTTCCCGGAGTTTCCTCTCGCCATCTGATGT
CTCAGAAGTTGTGGCAGTGACGCCCACATCTGCATATCTTGTTGGTCTGT
GAGTCGACGAGAAGGCTGCAAGAAAAGAGGCAAGGAGGAAAGCTCCGTCC
CCTGACCAGTTTGCCCAATCCAAAATGAGGGCAGAGATCGTCAACCCCTA
CAAGCAAAACTGGATCCTGGCCATTTCCCTTGGTATCAGTGAGTGTACAA
CGAAAAGTGTCCGTGCTAATCTTTCCCGGAGTTTCCTCTCGCCATCTGAT
GTCTCAGAAGTTGTGGCAGTGACGCCCACATCTGCATATCTTGTTGGTCT
GTGA
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