mRNA_H-paniculata_contig5762.13340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI) HSP 1 Score: 189 bits (481), Expect = 9.650e-54 Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = 1
Query: 1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RWQMVK P +GPWS EED+LL +LVD++G KKWSLIATQFPGRSGKQCRERWLNHLD RV+K AWTG+ED LC+AQG+LGNKWSEISKLLPGRAENAVKNR+
Sbjct: 122 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDMKLCEAQGRLGNKWSEISKLLPGRAENAVKNRF 225
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE) HSP 1 Score: 181 bits (460), Expect = 6.500e-51 Identity = 81/101 (80.20%), Postives = 91/101 (90.10%), Query Frame = 1
Query: 10 MVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
MVK P +GPWS EED+LL +LVD++G KKWSLIATQFPGRSGKQCRERWLNHLD RV+K AWTG+ED LC+AQG+LGNKWSEISKLLPGRAENAVKNR+
Sbjct: 1 MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRF 101
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A835Z962_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z962_9STRA) HSP 1 Score: 160 bits (406), Expect = 2.730e-48 Identity = 69/104 (66.35%), Postives = 87/104 (83.65%), Query Frame = 1
Query: 1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RWQ++ D P +GPW++EED +L LV Q+G KKWS +AT PGR+GKQCRERWLNHLD+RV K +WT EDE+L DAQ +LGN+WS+IS++LPGRAENAVKNR+
Sbjct: 51 RWQIICDLPVKGPWASEEDDVLRALVKQYGNKKWSHVATGLPGRTGKQCRERWLNHLDIRVMKTSWTPEEDELLFDAQRELGNQWSKISRMLPGRAENAVKNRF 154
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: W7TQR3_9STRA (Myb-related protein a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQR3_9STRA) HSP 1 Score: 159 bits (402), Expect = 1.840e-43 Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 1
Query: 1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGC--KKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RW +KD P +GPWS EEDALL LLV ++G KKWS++A PGR+GKQCRERWLNHLD V+K W ED +LCDAQ +LGNKWSEI+KLLPGRAEN+VKNR+
Sbjct: 189 RWDEIKDVPVKGPWSVEEDALLQLLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRF 294
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: D7FZ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ02_ECTSI) HSP 1 Score: 156 bits (395), Expect = 2.990e-43 Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RW VK+ P +GPWS+EED L LVD+ G KKW+L+A FPGRSGKQCRERW NH+D RV+K W+ ED++LC+AQ +LGNKWSE+SK+L GR+ENA+KNR+
Sbjct: 55 RWNYVKETPVKGPWSSEEDDHLKRLVDEFGSKKWNLLARAFPGRSGKQCRERWHNHVDGRVKKGEWSAEEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRF 158
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN) HSP 1 Score: 146 bits (369), Expect = 5.860e-43 Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 1
Query: 1 RWQ-MVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RW+ +V+ +GPW EED+LL LV++ G K+W+LIA+ PGR+GKQCRERWLNHLD RV K WT ED VL +AQ ++GNKWSEI++LLPGRAENAVKNR+
Sbjct: 47 RWEAVVRHTAVKGPWLPEEDSLLRQLVNKFGPKRWALIASHIPGRAGKQCRERWLNHLDTRVIKSDWTPDEDAVLLEAQQRVGNKWSEIARLLPGRAENAVKNRF 151
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: K8YTL3_NANGC (V-myb myeloblastosis viral oncogene-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTL3_NANGC) HSP 1 Score: 157 bits (396), Expect = 1.730e-42 Identity = 70/106 (66.04%), Postives = 83/106 (78.30%), Query Frame = 1
Query: 1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGC--KKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RW +KD P +GPWS EEDALL LV ++G KKWS++A PGR+GKQCRERWLNHLD V+K W ED +LCDAQ +LGNKWSEI+KLLPGRAEN+VKNR+
Sbjct: 60 RWDEIKDVPVKGPWSVEEDALLQQLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRF 165
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A7S2WV82_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV82_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.060e-40 Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RW++VK+ P +GPW EED LL LV Q G K+WS IA + PGR+GKQCRERWLNHLD V+K WT ED++L +AQ ++GN+WSEI+++LPGRAENAVKNRY
Sbjct: 178 RWRVVKNNPVKGPWLPEEDQLLRDLVGQFGPKQWSKIAEKIPGRAGKQCRERWLNHLDSSVKKSDWTPEEDKILLEAQRRVGNRWSEIARMLPGRAENAVKNRY 281
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A7S2MM62_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MM62_9STRA) HSP 1 Score: 146 bits (368), Expect = 5.580e-40 Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 1 RWQMV-KDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RWQ V K +GPW+ EED ++ LV +HGCKKWS IA Q GR GKQCRERW NHL+ ++K AWT ED+++ +A GKLGNKW+EIS++LPGR +NA+KNR+
Sbjct: 130 RWQKVLKPGIVKGPWTEEEDQKVITLVSKHGCKKWSFIAAQLEGRLGKQCRERWFNHLNPDIKKDAWTAEEDKIIVNAHGKLGNKWAEISRILPGRTDNAIKNRW 234
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: D8MAX1_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MAX1_BLAHO) HSP 1 Score: 147 bits (370), Expect = 1.300e-39 Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 1
Query: 1 RW-QMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
RW Q+++D+ +GPWS EED LL LV++HG KKWS IA+ GR GKQCRERWLNHL V K WT EDE+L +AQ ++GNKWS ISKLLPGR+ENAVKNRY
Sbjct: 52 RWEQVLRDQTVKGPWSEEEDKLLRSLVEKHGPKKWSTIASHINGRIGKQCRERWLNHLSPDVSKDVWTEEEDEILINAQFQMGNKWSFISKLLPGRSENAVKNRY 156 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5762.13340.1 >prot_H-paniculata_contig5762.13340.1 ID=prot_H-paniculata_contig5762.13340.1|Name=mRNA_H-paniculata_contig5762.13340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp MVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWback to top mRNA from alignment at H-paniculata_contig5762:11085..12535+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5762.13340.1 ID=mRNA_H-paniculata_contig5762.13340.1|Name=mRNA_H-paniculata_contig5762.13340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1451bp|location=Sequence derived from alignment at H-paniculata_contig5762:11085..12535+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5762:11085..12535+ >mRNA_H-paniculata_contig5762.13340.1 ID=mRNA_H-paniculata_contig5762.13340.1|Name=mRNA_H-paniculata_contig5762.13340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig5762:11085..12535+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |