mRNA_H-paniculata_contig5762.13340.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5762.13340.1
Unique NamemRNA_H-paniculata_contig5762.13340.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 9.650e-54
Identity = 84/104 (80.77%), Postives = 94/104 (90.38%), Query Frame = 1
Query:    1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RWQMVK  P +GPWS EED+LL +LVD++G KKWSLIATQFPGRSGKQCRERWLNHLD RV+K AWTG+ED  LC+AQG+LGNKWSEISKLLPGRAENAVKNR+
Sbjct:  122 RWQMVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDMKLCEAQGRLGNKWSEISKLLPGRAENAVKNRF 225          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A6H5KU69_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU69_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 6.500e-51
Identity = 81/101 (80.20%), Postives = 91/101 (90.10%), Query Frame = 1
Query:   10 MVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            MVK  P +GPWS EED+LL +LVD++G KKWSLIATQFPGRSGKQCRERWLNHLD RV+K AWTG+ED  LC+AQG+LGNKWSEISKLLPGRAENAVKNR+
Sbjct:    1 MVKANPVKGPWSPEEDSLLKVLVDEYGRKKWSLIATQFPGRSGKQCRERWLNHLDTRVKKSAWTGAEDVKLCEAQGRLGNKWSEISKLLPGRAENAVKNRF 101          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A835Z962_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z962_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.730e-48
Identity = 69/104 (66.35%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RWQ++ D P +GPW++EED +L  LV Q+G KKWS +AT  PGR+GKQCRERWLNHLD+RV K +WT  EDE+L DAQ +LGN+WS+IS++LPGRAENAVKNR+
Sbjct:   51 RWQIICDLPVKGPWASEEDDVLRALVKQYGNKKWSHVATGLPGRTGKQCRERWLNHLDIRVMKTSWTPEEDELLFDAQRELGNQWSKISRMLPGRAENAVKNRF 154          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: W7TQR3_9STRA (Myb-related protein a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQR3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.840e-43
Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGC--KKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RW  +KD P +GPWS EEDALL LLV ++G   KKWS++A   PGR+GKQCRERWLNHLD  V+K  W   ED +LCDAQ +LGNKWSEI+KLLPGRAEN+VKNR+
Sbjct:  189 RWDEIKDVPVKGPWSVEEDALLQLLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRF 294          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: D7FZ02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ02_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.990e-43
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 1
Query:    1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RW  VK+ P +GPWS+EED  L  LVD+ G KKW+L+A  FPGRSGKQCRERW NH+D RV+K  W+  ED++LC+AQ +LGNKWSE+SK+L GR+ENA+KNR+
Sbjct:   55 RWNYVKETPVKGPWSSEEDDHLKRLVDEFGSKKWNLLARAFPGRSGKQCRERWHNHVDGRVKKGEWSAEEDQILCEAQRQLGNKWSEMSKILVGRSENAIKNRF 158          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: F0YHL4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHL4_AURAN)

HSP 1 Score: 146 bits (369), Expect = 5.860e-43
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    1 RWQ-MVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RW+ +V+    +GPW  EED+LL  LV++ G K+W+LIA+  PGR+GKQCRERWLNHLD RV K  WT  ED VL +AQ ++GNKWSEI++LLPGRAENAVKNR+
Sbjct:   47 RWEAVVRHTAVKGPWLPEEDSLLRQLVNKFGPKRWALIASHIPGRAGKQCRERWLNHLDTRVIKSDWTPDEDAVLLEAQQRVGNKWSEIARLLPGRAENAVKNRF 151          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: K8YTL3_NANGC (V-myb myeloblastosis viral oncogene-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YTL3_NANGC)

HSP 1 Score: 157 bits (396), Expect = 1.730e-42
Identity = 70/106 (66.04%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGC--KKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RW  +KD P +GPWS EEDALL  LV ++G   KKWS++A   PGR+GKQCRERWLNHLD  V+K  W   ED +LCDAQ +LGNKWSEI+KLLPGRAEN+VKNR+
Sbjct:   60 RWDEIKDVPVKGPWSVEEDALLQQLVGRYGPRPKKWSMLAQHIPGRAGKQCRERWLNHLDRSVKKGEWEEGEDAILCDAQRRLGNKWSEIAKLLPGRAENSVKNRF 165          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A7S2WV82_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV82_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.060e-40
Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = 1
Query:    1 RWQMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RW++VK+ P +GPW  EED LL  LV Q G K+WS IA + PGR+GKQCRERWLNHLD  V+K  WT  ED++L +AQ ++GN+WSEI+++LPGRAENAVKNRY
Sbjct:  178 RWRVVKNNPVKGPWLPEEDQLLRDLVGQFGPKQWSKIAEKIPGRAGKQCRERWLNHLDSSVKKSDWTPEEDKILLEAQRRVGNRWSEIARMLPGRAENAVKNRY 281          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: A0A7S2MM62_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MM62_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.580e-40
Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    1 RWQMV-KDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RWQ V K    +GPW+ EED  ++ LV +HGCKKWS IA Q  GR GKQCRERW NHL+  ++K AWT  ED+++ +A GKLGNKW+EIS++LPGR +NA+KNR+
Sbjct:  130 RWQKVLKPGIVKGPWTEEEDQKVITLVSKHGCKKWSFIAAQLEGRLGKQCRERWFNHLNPDIKKDAWTAEEDKIIVNAHGKLGNKWAEISRILPGRTDNAIKNRW 234          
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Match: D8MAX1_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8MAX1_BLAHO)

HSP 1 Score: 147 bits (370), Expect = 1.300e-39
Identity = 68/105 (64.76%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    1 RW-QMVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERWLNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNRY 312
            RW Q+++D+  +GPWS EED LL  LV++HG KKWS IA+   GR GKQCRERWLNHL   V K  WT  EDE+L +AQ ++GNKWS ISKLLPGR+ENAVKNRY
Sbjct:   52 RWEQVLRDQTVKGPWSEEEDKLLRSLVEKHGPKKWSTIASHINGRIGKQCRERWLNHLSPDVSKDVWTEEEDEILINAQFQMGNKWSFISKLLPGRSENAVKNRY 156          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5762.13340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKP8_ECTSI9.650e-5480.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU69_9PHAE6.500e-5180.20MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835Z962_9STRA2.730e-4866.35Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
W7TQR3_9STRA1.840e-4366.98Myb-related protein a n=1 Tax=Nannochloropsis gadi... [more]
D7FZ02_ECTSI2.990e-4363.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0YHL4_AURAN5.860e-4362.86Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
K8YTL3_NANGC1.730e-4266.04V-myb myeloblastosis viral oncogene-like protein n... [more]
A0A7S2WV82_9STRA1.060e-4063.46Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2MM62_9STRA5.580e-4059.05Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
D8MAX1_BLAHO1.300e-3964.76Uncharacterized protein n=1 Tax=Blastocystis homin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5762contigH-paniculata_contig5762:11085..12535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue6.2e-43
Seed eggNOG ortholog2880.D8LKP8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-03_001110.1
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5762.13340.1prot_H-paniculata_contig5762.13340.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5762 11094..12535 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.4593997-UTR-H-paniculata_contig5762:11084..110931622930623.4593997-UTR-H-paniculata_contig5762:11084..11093Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5762 11085..11093 +
1691481377.1892097-UTR-H-paniculata_contig5762:11084..110931691481377.1892097-UTR-H-paniculata_contig5762:11084..11093Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5762 11085..11093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930623.475847-CDS-H-paniculata_contig5762:11093..111851622930623.475847-CDS-H-paniculata_contig5762:11093..11185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5762 11094..11185 +
1691481377.1997468-CDS-H-paniculata_contig5762:11093..111851691481377.1997468-CDS-H-paniculata_contig5762:11093..11185Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5762 11094..11185 +
1622930623.492188-CDS-H-paniculata_contig5762:12318..125351622930623.492188-CDS-H-paniculata_contig5762:12318..12535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5762 12319..12535 +
1691481377.213579-CDS-H-paniculata_contig5762:12318..125351691481377.213579-CDS-H-paniculata_contig5762:12318..12535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5762 12319..12535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5762.13340.1

>prot_H-paniculata_contig5762.13340.1 ID=prot_H-paniculata_contig5762.13340.1|Name=mRNA_H-paniculata_contig5762.13340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MVKDKPKRGPWSAEEDALLMLLVDQHGCKKWSLIATQFPGRSGKQCRERW
LNHLDVRVRKCAWTGSEDEVLCDAQGKLGNKWSEISKLLPGRAENAVKNR
YY*
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mRNA from alignment at H-paniculata_contig5762:11085..12535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5762.13340.1 ID=mRNA_H-paniculata_contig5762.13340.1|Name=mRNA_H-paniculata_contig5762.13340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1451bp|location=Sequence derived from alignment at H-paniculata_contig5762:11085..12535+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGCAGATGGTGAAGGATAAGCCGAAGAGGGGCCCTTGGTCGGCGGA GGAAGACGCTTTGCTCATGCTCCTCGTAGATCAGCACGGATGCAAGAAGT GGTGAGCGAGGGAGGGAGAGACAGAGAGACGGAAAGACAGAGAGGGGGGC AGGGGAGAGAGAGAGAGAGCAGCTAGCGCGATACTTTCCATCGAGCATTA TTCAAACTGAAGCGAGTTGAAAATTAATTTCGAATGAATTACAGATTGTA TGTATGTGGATCAATTTTTCACAAATTTCTCCACTGAAACAAACAATCGG AACCAAATATGGTGGACCCAGGTATACATATATATATTTGTACACACACT TAGACTATTAATAGCCCACCAACATACCATCAAAACACGAGCTGTTAACT TGATTCAACAAAGAACCAACCAACAAGGCCCCGAACAAACAGAAAGTTTA CGTTCTACAACACAAGTGGTTAAACAAGGACAAATACAACGGGCGCCATG TATCGAAGATTTGAATCACCGCAAGGCTGAAAAAAACATTTCGAAGTTGA CGTCGAAGGCTGCACAATACAAGGCATTAGCTATGTTTTCACTCACTTCA TCACAGTTCATTAGCACTTCGTTAAATCCCGTCGGTCGAAAATGATTAAA CCTCACTGCGCAAGTTCCTGTAGTGTAAACAAGTATCCAGCATCTGTACA AAAAGCAACACATTTCAATTGGATCGTGACTATACGTTCATCGCTTGCCC CTACAGATTTCAGTTGTCCGTAGTTCACCGGTTAAATTGTACCCCATTCG CCAGCACACCGAGTTTGGGCCAAATGATATGGTTCTCGTAGAACAGCACG TATGCAAGAACTAGCGAGGAGAGCAGAGAGTGTGTTACCGCATTTTAGAT ACAAGGAACACCGACATTGCCCAACTATACTACCTCTCCCACCCCGAATA CCGTTGCGAATACAGTAAGCACCAATAAGTCTCATCTGAATACTATCAGC GAGTGAGGTTGAACAAAGGGCGGTCACTGCAAGTTTACCCGTATAATATC TATCCTACAACAGCATACTACTTGGTAAATACATATCACGATTAGTAACG TTATTCAGCGACATAAACGAATGAAAATATCGAATTTTCACCATCCCATG CATTATGTTCACCACTAACAGATCAAGGTCTGCTGAATAGGCACACAAGC ATAACACACACATGCGACGCATCCATTATCGCAGGAGCTTGATAGCTACC CAATTTCCTGGGAGGTCGGGCAAGCAATGTCGGGAGCGCTGGCTCAACCA CCTGGATGTGCGGGTTCGGAAATGCGCTTGGACCGGAAGCGAAGATGAGG TACTGTGCGACGCCCAGGGTAAGCTCGGAAACAAGTGGTCGGAGATCTCC AAGCTACTGCCCGGCCGCGCCGAGAATGCCGTGAAGAATAGGTACTATTG A
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Coding sequence (CDS) from alignment at H-paniculata_contig5762:11085..12535+

>mRNA_H-paniculata_contig5762.13340.1 ID=mRNA_H-paniculata_contig5762.13340.1|Name=mRNA_H-paniculata_contig5762.13340.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig5762:11085..12535+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGGATAAGCCGAAGAGGGGCCCTTGGTCGGCGGAGGAAGACGC
TTTGCTCATGCTCCTCGTAGATCAGCACGGATGCAAGAAGTGATGGTGAA
GGATAAGCCGAAGAGGGGCCCTTGGTCGGCGGAGGAAGACGCTTTGCTCA
TGCTCCTCGTAGATCAGCACGGATGCAAGAAGTGGAGCTTGATAGCTACC
CAATTTCCTGGGAGGTCGGGCAAGCAATGTCGGGAGCGCTGGCTCAACCA
CCTGGATGTGCGGGTTCGGAAATGCGCTTGGACCGGAAGCGAAGATGAGG
TACTGTGCGACGCCCAGGGTAAGCTCGGAAACAAGTGGTCGGAGATCTCC
AAGCTACTGCCCGGCCGCGCCGAGAATGCCGTGAAGAATAGGTACTATTG
AGAGCTTGATAGCTACCCAATTTCCTGGGAGGTCGGGCAAGCAATGTCGG
GAGCGCTGGCTCAACCACCTGGATGTGCGGGTTCGGAAATGCGCTTGGAC
CGGAAGCGAAGATGAGGTACTGTGCGACGCCCAGGGTAAGCTCGGAAACA
AGTGGTCGGAGATCTCCAAGCTACTGCCCGGCCGCGCCGAGAATGCCGTG
AAGAATAGGTACTATTGA
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