mRNA_H-paniculata_contig57565.13326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57565.13326.1
Unique NamemRNA_H-paniculata_contig57565.13326.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 84.7 bits (208), Expect = 4.290e-15
Identity = 66/235 (28.09%), Postives = 110/235 (46.81%), Query Frame = 1
Query:   73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVA-ESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKM--LVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
            R   T +   L++ + +S+LP EY   +      P+      LL ER+R +       T    V   V   +K+NV  + R CF+C+ +GHL  NC  +     K  G    S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V + NG+ +P+ G+G +   V++K +  +++  +  V +VP L  NLFS++   ++GF      +G
Sbjct:   21 RLTATQLPDLLLMCRIMSTLPQEYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKADSKENVKKDKRKCFKCHRIGHLAKNCTMK---TVKNAGQSRQS------FGGETFLCYRTEDNRNTCR-VWLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFIKGKWILNRMEV--VWYVPKLGLNLFSIEKAAEKGFNFTANVDG 243          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0WE00_9BILA (Copia protein n=4 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WE00_9BILA)

HSP 1 Score: 84.3 bits (207), Expect = 6.280e-15
Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 1
Query:   73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+ +P  G+G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  152 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTNTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 374          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.800e-15
Identity = 72/276 (26.09%), Postives = 123/276 (44.57%), Query Frame = 1
Query:    4 LKYSRGQDPDEFWVELEKVQTHARSLGTDIASELVINKFLSSLPSEYVFV--------RDHLRMEPM---LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSS-------DGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGAAIALPNGN 774
            +  S   D ++   E++ +     + GT + ++  I   L SLP  +  +        +D + +E +   L+ E +R + RD +     + ++T V         E+RVCF C + GHL+ NC +++    K   +  SS   P    S          R I   V  +     W+ DSGA+AHMT        +E     ++T+A+G+   I G G  +L  +    E+ +  +S V +VPGL TNL S++ + ++   V    +G  I  P GN
Sbjct:  108 INLSERGDLEQHLFEVDDLFDRLDAAGTTLDADTKICLLLRSLPPSFDGLVTALDSRSQDDITLEVVKSKLMDEFLRRLERDGHPVKKEKAMKTAV-----TKTGETRVCFYCKKPGHLQRNC-RKLLEAKKEENNTSSSGTKPKKSDSVKAKAVHSDTRGIAFVVNGENARS-WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1B5K0_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Trichinella TaxID=6333 RepID=A0A0V1B5K0_TRISP)

HSP 1 Score: 84.3 bits (207), Expect = 9.520e-15
Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 1
Query:   73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+ +P  G+G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  152 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTNTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 374          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1L945_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1L945_9BILA)

HSP 1 Score: 84.3 bits (207), Expect = 9.640e-15
Identity = 66/233 (28.33%), Postives = 105/233 (45.06%), Query Frame = 1
Query:   73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+T+P  G G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  163 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 385          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0TK25_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0TK25_9BILA)

HSP 1 Score: 84.0 bits (206), Expect = 1.310e-14
Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 1
Query:   73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+ +P  G+G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  945 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 1167          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1M1K0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1M1K0_9BILA)

HSP 1 Score: 81.6 bits (200), Expect = 7.590e-14
Identity = 67/233 (28.76%), Postives = 106/233 (45.49%), Query Frame = 1
Query:   73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVA-ESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
            R  GT +   L++++ +S+LP EY   +      P+      LL ER+R +       T    V   V   +K+NV  + R CF+C+ +GHL  NC  +     K  G    S    + F    +R  D     + C   W+ADSGA+ HMT + E + D+ T    + V + NG+ +P  G G +   +  +G+     +  V +VP L  NLFS+     +GF      +G
Sbjct:  152 RLTGTQLPDLLLMSRIMSTLPQEYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKADSKENVKKDKRRCFKCHRIGHLAKNCTMK---TVKNAGQSRQSFGGGSFFC---YRAEDNR---NTCR-MWLADSGASQHMTHNKEYLADFVTFPQPVNVKIRNGDAIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKAADKGFYFTANADG 374          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.920e-14
Identity = 73/247 (29.55%), Postives = 112/247 (45.34%), Query Frame = 1
Query:   73 RSLGTDI--ASELVINKFLSSLPSEYVFVRDHLRMEPMLLPERVRAVVRDKY------------LSTAPEGVRTV-VFF-------GNKKNVAESRV-----CFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTV 729
            +SLG  I  A +LV+   LSSLP+EY  +   +     +    V+  +  KY            L     G+++    F       G K N++  R+     CF C++ GH+K     R CP  KG G  E      A+F++   R              W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  + ++G  V
Sbjct:   22 QSLGEPIDEARQLVV--LLSSLPAEYEIIASIVENAKDVTLIEVKEKLLKKYKRQDKKEATERALKVTTHGIKSKNARFDKSGRNNGRKDNISRKRIGFEGKCFNCDKFGHMK-----RECPDFKGPGKNEED----AVFAAGESR-----------SSGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0Z7R7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0Z7R7_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 2.750e-13
Identity = 65/233 (27.90%), Postives = 104/233 (44.64%), Query Frame = 1
Query:   73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
            R   T +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+T+P  G G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  151 RLTSTQLPDLLLMSRIMSTLPQDYFEFKIVWESLPVGERSVNLLIERLRLIEMRLPEKTTDSSVVLTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGKSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 373          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.470e-13
Identity = 70/244 (28.69%), Postives = 110/244 (45.08%), Query Frame = 1
Query:   88 DIASELVINKFLSSLPSEYVFVRDH---------LRMEPMLLPERVRAVVRD------KYLSTAPEGVRTVVFFGNK-----KNVAESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGAAI 756
            D A +LVI   LSSLP+EY  +            + ++  LL E  R   +D      K  +   +      F G K     KN A    C+ C+++GH+K +CP         + + E      A+F+      + K     G    W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  + ++G +V  ++    I
Sbjct:  139 DEARQLVI--LLSSLPTEYELISSIVENSKDVTLIEVKERLLKEYERLEKKDGTESALKATANGGKFKNAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPS------SNVSNDEE-----AVFA------VGK-----GRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V1HEX2_9BILA4.290e-1528.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0WE00_9BILA6.280e-1527.90Copia protein n=4 Tax=Trichinella sp. T6 TaxID=921... [more]
Q967L5_AEDAE6.800e-1526.09Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A0V1B5K0_TRISP9.520e-1527.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1L945_9BILA9.640e-1528.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0TK25_9BILA1.310e-1427.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1M1K0_9BILA7.590e-1428.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A3M6VPY8_9STRA7.920e-1429.55CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A0V0Z7R7_9BILA2.750e-1327.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A329SN38_9STRA8.470e-1328.69Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57565contigH-paniculata_contig57565:13..1017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score83.6
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog6334.EFV55218
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons3
Model size783
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57565.13326.1prot_H-paniculata_contig57565.13326.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57565 13..1017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.9901779-CDS-H-paniculata_contig57565:12..3601622930621.9901779-CDS-H-paniculata_contig57565:12..360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57565 13..360 -
1691481376.5529168-CDS-H-paniculata_contig57565:12..3601691481376.5529168-CDS-H-paniculata_contig57565:12..360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57565 13..360 -
1622930622.004653-CDS-H-paniculata_contig57565:432..6431622930622.004653-CDS-H-paniculata_contig57565:432..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57565 433..643 -
1691481376.5639489-CDS-H-paniculata_contig57565:432..6431691481376.5639489-CDS-H-paniculata_contig57565:432..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57565 433..643 -
1622930622.0185506-CDS-H-paniculata_contig57565:793..10171622930622.0185506-CDS-H-paniculata_contig57565:793..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57565 794..1017 -
1691481376.573631-CDS-H-paniculata_contig57565:793..10171691481376.573631-CDS-H-paniculata_contig57565:793..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57565 794..1017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57565.13326.1

>prot_H-paniculata_contig57565.13326.1 ID=prot_H-paniculata_contig57565.13326.1|Name=mRNA_H-paniculata_contig57565.13326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
QLKYSRGQDPDEFWVELEKVQTHARSLGTDIASELVINKFLSSLPSEYVF
VRDHLRMEPMLLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESRVC
FQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVP
VDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYG
KMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGA
AIALPNGNDLL
back to top

mRNA from alignment at H-paniculata_contig57565:13..1017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57565.13326.1 ID=mRNA_H-paniculata_contig57565.13326.1|Name=mRNA_H-paniculata_contig57565.13326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-paniculata_contig57565:13..1017- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACTAAAGTACAGTCGTGGGCAGGATCCGGATGAGTTTTGGGTAGAGCT TGAAAAGGTGCAGACGCATGCAAGATCACTCGGAACCGATATTGCTTCAG AGTTAGTGATAAATAAATTCCTGTCGTCCCTGCCCTCCGAGTATGTCTTT GTGCGAGACCATCTGCGCATGGAACCCATGCTTTTACCTGAGAGGGTGCG CGCTGTGGTCAGAGATAAATATTTGTCCTTGAAGGAAGCAGATGGTGGAA AAGGAGGTGGCAAAACTGCGCCCTGTTCGCAGGGAATGGTAGAAACCCCG ACCCAAACAATTGAGGGAAGGGGCGTGGGGGCAGGTCACACCAACCTGCA ACAAGTGCAGGTGCTGTCGGTAAGGTCAACGGCACCGGAGGGGGTACGAA CAGTGGTATTTTTCGGAAACAAGAAAAATGTCGCTGAAAGTCGTGTTTGT TTTCAATGTAATGAGCTAGGTCATCTGAAGATGAATTGTCCTCAGCGCAT ATGTCCGATCTGCAAAGGGATTGGTCATGGCGAGAGCAGTCACAGGTTAC CAGCAATGTTCTCTTCGGACGGGTTCAGGGACATCGTTGAACACGGTTTC ACGGCCAGAGTGGCAGGGCAGGGCGAGGTTGCTTCGGTAATTGAGCTTAT TGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAATTTTGGGTGG CCGACAGTGGGGCTACGGCCCACATGACTCCATCTAACGAATTAATGTTT GACTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAAC GCTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGATGAAGGATCGGG GCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTG GACACAAATTTGTTTTCCCTACAGGTTGTAGTGAAGCAGGGATTTACTGT CTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAATGGGAACGATC TTTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig57565:13..1017-

>mRNA_H-paniculata_contig57565.13326.1 ID=mRNA_H-paniculata_contig57565.13326.1|Name=mRNA_H-paniculata_contig57565.13326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig57565:13..1017- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACTAAAGTACAGTCGTGGGCAGGATCCGGATGAGTTTTGGGTAGAGCT
TGAAAAGGTGCAGACGCATGCAAGATCACTCGGAACCGATATTGCTTCAG
AGTTAGTGATAAATAAATTCCTGTCGTCCCTGCCCTCCGAGTATGTCTTT
GTGCGAGACCATCTGCGCATGGAACCCATGCTTTTACCTGAGAGGGTGCG
CGCTGTGGTCAGAGATAAATATTTCAACTAAAGTACAGTCGTGGGCAGGA
TCCGGATGAGTTTTGGGTAGAGCTTGAAAAGGTGCAGACGCATGCAAGAT
CACTCGGAACCGATATTGCTTCAGAGTTAGTGATAAATAAATTCCTGTCG
TCCCTGCCCTCCGAGTATGTCTTTGTGCGAGACCATCTGCGCATGGAACC
CATGCTTTTACCTGAGAGGGTGCGCGCTGTGGTCAGAGATAAATATTTGT
CAACGGCACCGGAGGGGGTACGAACAGTGGTATTTTTCGGAAACAAGAAA
AATGTCGCTGAAAGTCGTGTTTGTTTTCAATGTAATGAGCTAGGTCATCT
GAAGATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAAGGGATTGGTC
ATGGCGAGAGCAGTCACAGGTTACCAGCAATGTTCTCTTCGGACGGGTTC
AGGGACATCGTCAACGGCACCGGAGGGGGTACGAACAGTGGTATTTTTCG
GAAACAAGAAAAATGTCGCTGAAAGTCGTGTTTGTTTTCAATGTAATGAG
CTAGGTCATCTGAAGATGAATTGTCCTCAGCGCATATGTCCGATCTGCAA
AGGGATTGGTCATGGCGAGAGCAGTCACAGGTTACCAGCAATGTTCTCTT
CGGACGGGTTCAGGGACATCGACAAGCCAGTACCAGTAGATGGTTGTGAG
GAATTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCATCTAA
CGAATTAATGTTTGACTACGAAACCTGCAGTAATTTGTTTGTGACGGTGG
CTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGATGTTGGTATGG
ATGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCA
TGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGGTTGTAGTGAAGC
AGGGATTTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCT
AATGGGAACGATCTTTTGGACAAGCCAGTACCAGTAGATGGTTGTGAGGA
ATTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCATCTAACG
AATTAATGTTTGACTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCT
AACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGAT
GAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATG
TTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGGTTGTAGTGAAGCAG
GGATTTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAA
TGGGAACGATCTTTTG
back to top