prot_H-paniculata_contig57565.13326.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig57565.13326.1
Unique Nameprot_H-paniculata_contig57565.13326.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length261
Homology
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA)

HSP 1 Score: 84.7 bits (208), Expect = 4.290e-15
Identity = 66/235 (28.09%), Postives = 110/235 (46.81%), Query Frame = 0
Query:   25 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVA-ESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKM--LVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 249
            R   T +   L++ + +S+LP EY   +      P+      LL ER+R +       T    V   V   +K+NV  + R CF+C+ +GHL  NC  +     K  G    S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V + NG+ +P+ G+G +   V++K +  +++  +  V +VP L  NLFS++   ++GF      +G
Sbjct:   21 RLTATQLPDLLLMCRIMSTLPQEYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKADSKENVKKDKRKCFKCHRIGHLAKNCTMK---TVKNAGQSRQS------FGGETFLCYRTEDNRNTCR-VWLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFIKGKWILNRMEV--VWYVPKLGLNLFSIEKAAEKGFNFTANVDG 243          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0WE00_9BILA (Copia protein n=4 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WE00_9BILA)

HSP 1 Score: 84.3 bits (207), Expect = 6.280e-15
Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 0
Query:   25 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 249
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+ +P  G+G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  152 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTNTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 374          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.800e-15
Identity = 72/276 (26.09%), Postives = 123/276 (44.57%), Query Frame = 0
Query:    2 LKYSRGQDPDEFWVELEKVQTHARSLGTDIASELVINKFLSSLPSEYVFV--------RDHLRMEPM---LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSS-------DGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGAAIALPNGN 258
            +  S   D ++   E++ +     + GT + ++  I   L SLP  +  +        +D + +E +   L+ E +R + RD +     + ++T V         E+RVCF C + GHL+ NC +++    K   +  SS   P    S          R I   V  +     W+ DSGA+AHMT        +E     ++T+A+G+   I G G  +L  +    E+ +  +S V +VPGL TNL S++ + ++   V    +G  I  P GN
Sbjct:  108 INLSERGDLEQHLFEVDDLFDRLDAAGTTLDADTKICLLLRSLPPSFDGLVTALDSRSQDDITLEVVKSKLMDEFLRRLERDGHPVKKEKAMKTAV-----TKTGETRVCFYCKKPGHLQRNC-RKLLEAKKEENNTSSSGTKPKKSDSVKAKAVHSDTRGIAFVVNGENARS-WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1B5K0_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Trichinella TaxID=6333 RepID=A0A0V1B5K0_TRISP)

HSP 1 Score: 84.3 bits (207), Expect = 9.520e-15
Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 0
Query:   25 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 249
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+ +P  G+G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  152 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTNTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 374          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1L945_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1L945_9BILA)

HSP 1 Score: 84.3 bits (207), Expect = 9.640e-15
Identity = 66/233 (28.33%), Postives = 105/233 (45.06%), Query Frame = 0
Query:   25 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 249
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+T+P  G G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  163 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 385          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0TK25_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0TK25_9BILA)

HSP 1 Score: 84.0 bits (206), Expect = 1.310e-14
Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 0
Query:   25 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 249
            R  GT +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+ +P  G+G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  945 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 1167          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1M1K0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1M1K0_9BILA)

HSP 1 Score: 81.6 bits (200), Expect = 7.590e-14
Identity = 67/233 (28.76%), Postives = 106/233 (45.49%), Query Frame = 0
Query:   25 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVA-ESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 249
            R  GT +   L++++ +S+LP EY   +      P+      LL ER+R +       T    V   V   +K+NV  + R CF+C+ +GHL  NC  +     K  G    S    + F    +R  D     + C   W+ADSGA+ HMT + E + D+ T    + V + NG+ +P  G G +   +  +G+     +  V +VP L  NLFS+     +GF      +G
Sbjct:  152 RLTGTQLPDLLLMSRIMSTLPQEYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKADSKENVKKDKRRCFKCHRIGHLAKNCTMK---TVKNAGQSRQSFGGGSFFC---YRAEDNR---NTCR-MWLADSGASQHMTHNKEYLADFVTFPQPVNVKIRNGDAIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKAADKGFYFTANADG 374          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.920e-14
Identity = 73/247 (29.55%), Postives = 112/247 (45.34%), Query Frame = 0
Query:   25 RSLGTDI--ASELVINKFLSSLPSEYVFVRDHLRMEPMLLPERVRAVVRDKY------------LSTAPEGVRTV-VFF-------GNKKNVAESRV-----CFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTV 243
            +SLG  I  A +LV+   LSSLP+EY  +   +     +    V+  +  KY            L     G+++    F       G K N++  R+     CF C++ GH+K     R CP  KG G  E      A+F++   R              W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  + ++G  V
Sbjct:   22 QSLGEPIDEARQLVV--LLSSLPAEYEIIASIVENAKDVTLIEVKEKLLKKYKRQDKKEATERALKVTTHGIKSKNARFDKSGRNNGRKDNISRKRIGFEGKCFNCDKFGHMK-----RECPDFKGPGKNEED----AVFAAGESR-----------SSGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0Z7R7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0Z7R7_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 2.750e-13
Identity = 65/233 (27.90%), Postives = 104/233 (44.64%), Query Frame = 0
Query:   25 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 249
            R   T +   L++++ +S+LP +Y   +      P+      LL ER+R +       T    V   V    K+NV + R  CF+C+ +GHL  NC  +     +  G  + S      F  + F         + C   W+ADSGA+ HMT + E + D+ T    + V V NG+T+P  G G +   +  +G+     +  V +VP L  NLFS+    ++GF       G
Sbjct:  151 RLTSTQLPDLLLMSRIMSTLPQDYFEFKIVWESLPVGERSVNLLIERLRLIEMRLPEKTTDSSVVLTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGKSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 373          
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.470e-13
Identity = 70/244 (28.69%), Postives = 110/244 (45.08%), Query Frame = 0
Query:   30 DIASELVINKFLSSLPSEYVFVRDH---------LRMEPMLLPERVRAVVRD------KYLSTAPEGVRTVVFFGNK-----KNVAESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGAAI 252
            D A +LVI   LSSLP+EY  +            + ++  LL E  R   +D      K  +   +      F G K     KN A    C+ C+++GH+K +CP         + + E      A+F+      + K     G    W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  + ++G +V  ++    I
Sbjct:  139 DEARQLVI--LLSSLPTEYELISSIVENSKDVTLIEVKERLLKEYERLEKKDGTESALKATANGGKFKNAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPS------SNVSNDEE-----AVFA------VGK-----GRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V1HEX2_9BILA4.290e-1528.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0WE00_9BILA6.280e-1527.90Copia protein n=4 Tax=Trichinella sp. T6 TaxID=921... [more]
Q967L5_AEDAE6.800e-1526.09Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A0V1B5K0_TRISP9.520e-1527.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1L945_9BILA9.640e-1528.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0TK25_9BILA1.310e-1427.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1M1K0_9BILA7.590e-1428.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A3M6VPY8_9STRA7.920e-1429.55CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A0V0Z7R7_9BILA2.750e-1327.90Retrovirus-related Pol polyprotein from transposon... [more]
A0A329SN38_9STRA8.470e-1328.69Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 99..115
e-value: 0.0078
score: 24.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 100..115
score: 9.488
NoneNo IPR availableGENE3D4.10.60.10coord: 88..131
e-value: 2.4E-6
score: 29.3
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 89..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57565contigH-paniculata_contig57565:13..1017 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57565.13326.1mRNA_H-paniculata_contig57565.13326.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig57565 13..1017 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig57565.13326.1 ID=prot_H-paniculata_contig57565.13326.1|Name=mRNA_H-paniculata_contig57565.13326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
QLKYSRGQDPDEFWVELEKVQTHARSLGTDIASELVINKFLSSLPSEYVF
VRDHLRMEPMLLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESRVC
FQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVP
VDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYG
KMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGA
AIALPNGNDLL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf