mRNA_H-paniculata_contig57544.13322.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57544.13322.1
Unique NamemRNA_H-paniculata_contig57544.13322.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA)

HSP 1 Score: 63.2 bits (152), Expect = 6.270e-9
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    4 EKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKE 327
            + E W  D+GA+ HMT DKT+F  Y P+ P     +A+   VPVAG G + L++S   G  +   L   +HVP LG NL ST P     G S  ++  K ++E+ +K+
Sbjct:  325 QNETWIIDSGASRHMTGDKTLFSTYGPS-PVQEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFST-PQVQRLGGSINFT--KKTVEIFDKK 428          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD)

HSP 1 Score: 63.2 bits (152), Expect = 6.400e-9
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    4 EKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKE 327
            + E W  D+GA+ HMT DKT+F  Y P+ P     +A+   VPVAG G + L++S   G  +   L   +HVP LG NL ST P     G S  ++  K ++E+ +K+
Sbjct:  324 QNETWIIDSGASRHMTGDKTLFSTYGPS-PVQEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFST-PQVQRLGGSINFT--KKTVEIFDKK 427          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A151QW18_CAJCA (Retrotrans_gag domain-containing protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QW18_CAJCA)

HSP 1 Score: 62.0 bits (149), Expect = 1.410e-8
Identity = 40/122 (32.79%), Postives = 58/122 (47.54%), Query Frame = 1
Query:    1 GEKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
            G+ + W  D+GA+DHMT D TVF+ Y+P L      IA+G    V G G +++        S+   LN  ++VP L CNL+S    T        +  N    ++ E    I N    +GLY
Sbjct:  292 GKPKSWIIDSGASDHMTRDLTVFKSYSPCLNNYTVRIADGTLSKVMGKGSVII--------SQNITLNSVLYVPILDCNLLSISKLTRDLKSVTKFFPNLCEFQILESGKTIGNAEECAGLY 405          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A5BWI9_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BWI9_VITVI)

HSP 1 Score: 61.6 bits (148), Expect = 2.120e-8
Identity = 41/120 (34.17%), Postives = 57/120 (47.50%), Query Frame = 1
Query:    7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
            K+ W  D+GA+DHMT D T+F+ Y+         IA+G    VAG G +VL        SR   LN  + VP+L CNL+S    T     +  +S+     +  +    I N    SGLY
Sbjct:  538 KKPWRVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCTTNFSSTHCEFQDLDSGKTIGNAEECSGLY 649          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A438IWP5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IWP5_VITVI)

HSP 1 Score: 61.6 bits (148), Expect = 2.160e-8
Identity = 42/120 (35.00%), Postives = 58/120 (48.33%), Query Frame = 1
Query:    7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
            K+ W  D+GA+DHMT D T+F+ Y+        +IA+G    VAG G +VL        SR   LN  + VP+L CNL+S    T        +S+     +  +    I NV   SGLY
Sbjct:  287 KKPWIVDSGASDHMTGDATIFDTYSSCPNNLTVQIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNVEECSGLY 398          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A165M5Y1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M5Y1_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 2.560e-8
Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 1
Query:   13 HWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSG 273
            +WN+DTGAT HMT  +  F  Y+P +      + N   +  AG G ++  +     K+ + +L+  +HVP LG NL+S    T T G
Sbjct:   62 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLTNDTIIYTAGMGSVMFELVLGESKAPVVVLHNVLHVPQLGSNLLSVYHLTKTKG 146          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A8J2WLN9_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WLN9_9CRUS)

HSP 1 Score: 60.8 bits (146), Expect = 3.690e-8
Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   16 WNSDTGATDHMTSDKTVFEDYTPALPGT-MCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASL 309
            W +D+GAT HMT  +++  +Y P  PG+ M     G  +PV G G++ +L        RI  ++  +HVPDLG NL S   AT+  G   I++ NK ++
Sbjct:  345 WFADSGATSHMTDQRSLIFNYKPVTPGSWMVTGIGGATLPVHGQGQVSVLTEGEVESERI--ISPVLHVPDLGTNLFSIVSATEA-GMKAIFNGNKVNI 440          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A438JG64_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JG64_VITVI)

HSP 1 Score: 60.8 bits (146), Expect = 3.930e-8
Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 1
Query:    7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
            K+ W  D+GATDHMT D T+F+ Y+         IA+G    VAG G +VL        SR   LN  + VP+L CNL+S    T        +S+     +  +    I N    SGLY
Sbjct:   64 KKPWIVDSGATDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLY 175          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A8J6D396_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D396_9ROSI)

HSP 1 Score: 60.5 bits (145), Expect = 5.410e-8
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   16 WNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPAT 261
            W  D+GA+DHMT + T+F  YTP    +   IA+G + PVAG G + +  +          L++ +HVP+L CNL+S    T
Sbjct:  293 WILDSGASDHMTGNSTLFHTYTPCHDKSRIRIADGSYSPVAGVGEVQITENF--------FLDKVLHVPNLSCNLLSISKLT 366          
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A438F3H0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F3H0_VITVI)

HSP 1 Score: 60.5 bits (145), Expect = 5.490e-8
Identity = 41/120 (34.17%), Postives = 57/120 (47.50%), Query Frame = 1
Query:    7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
            K+ W  D+GA+DHMT D T+F+ Y+         IA+G    VAG G +VL        SR   LN  + VP+L CNL+S    T        +S+     +  +   +I N    SGLY
Sbjct:  340 KKPWIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKMIGNAEECSGLY 451          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D1DPX6_USTMA6.270e-937.96Retrotransposon HobS hobase n=1 Tax=Ustilago maydi... [more]
Q2EPY7_USTMD6.400e-937.96Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2... [more]
A0A151QW18_CAJCA1.410e-832.79Retrotrans_gag domain-containing protein (Fragment... [more]
A5BWI9_VITVI2.120e-834.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A438IWP5_VITVI2.160e-835.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A165M5Y1_9AGAM2.560e-834.48Uncharacterized protein (Fragment) n=1 Tax=Neolent... [more]
A0A8J2WLN9_9CRUS3.690e-836.36Hypothetical protein n=1 Tax=Daphnia galeata TaxID... [more]
A0A438JG64_VITVI3.930e-835.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6D396_9ROSI5.410e-837.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A438F3H0_VITVI5.490e-834.17Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57544contigH-paniculata_contig57544:48..452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.3
Seed ortholog evalue5e-08
Seed eggNOG ortholog5270.UM01393P0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Retrotransposon gag protein
EggNOG OGs38DPC@33154,3NUZ7@4751,3V2N5@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.6849432-CDS-H-paniculata_contig57544:47..4521622930621.6849432-CDS-H-paniculata_contig57544:47..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57544 48..452 -
1691481376.4369106-CDS-H-paniculata_contig57544:47..4521691481376.4369106-CDS-H-paniculata_contig57544:47..452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57544 48..452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57544.13322.1prot_H-paniculata_contig57544.13322.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57544 48..452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57544.13322.1

>prot_H-paniculata_contig57544.13322.1 ID=prot_H-paniculata_contig57544.13322.1|Name=mRNA_H-paniculata_contig57544.13322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
GEKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGR
LVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANK
ASLELGEKESLIFNVSASSGLYEVEAVRSAAGTA*
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mRNA from alignment at H-paniculata_contig57544:48..452-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57544.13322.1 ID=mRNA_H-paniculata_contig57544.13322.1|Name=mRNA_H-paniculata_contig57544.13322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig57544:48..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCACATGAC GTCGGATAAGACTGTGTTCGAGGACTACACTCCAGCGCTGCCGGGGACCA TGTGTGAAATCGCCAACGGGATATTCGTGCCGGTGGCGGGGTGGGGACGC CTTGTGCTTCTAGTAAGCCAACCGGGGGGAAAATCACGGATAGCAATGTT AAACAGGGCTGTCCACGTACCCGATCTCGGGTGCAACTTAATCTCCACAC GCCCAGCAACAGATACATCGGGTGAATCGTTCATATACAGTGCCAACAAA GCAAGCCTCGAGCTAGGGGAGAAAGAAAGCCTTATCTTCAACGTGTCAGC ATCTTCAGGACTGTATGAGGTGGAGGCCGTTCGGAGTGCTGCGGGAACAG CATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig57544:48..452-

>mRNA_H-paniculata_contig57544.13322.1 ID=mRNA_H-paniculata_contig57544.13322.1|Name=mRNA_H-paniculata_contig57544.13322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig57544:48..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCACATGAC
GTCGGATAAGACTGTGTTCGAGGACTACACTCCAGCGCTGCCGGGGACCA
TGTGTGAAATCGCCAACGGGATATTCGTGCCGGTGGCGGGGTGGGGACGC
CTTGTGCTTCTAGTAAGCCAACCGGGGGGAAAATCACGGATAGCAATGTT
AAACAGGGCTGTCCACGTACCCGATCTCGGGTGCAACTTAATCTCCACAC
GCCCAGCAACAGATACATCGGGTGAATCGTTCATATACAGTGCCAACAAA
GCAAGCCTCGAGCTAGGGGAGAAAGAAAGCCTTATCTTCAACGTGTCAGC
ATCTTCAGGACTGTATGAGGTGGAGGCCGTTCGGAGTGCTGCGGGAACAG
CATAAGGAGAGAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCAC
ATGACGTCGGATAAGACTGTGTTCGAGGACTACACTCCAGCGCTGCCGGG
GACCATGTGTGAAATCGCCAACGGGATATTCGTGCCGGTGGCGGGGTGGG
GACGCCTTGTGCTTCTAGTAAGCCAACCGGGGGGAAAATCACGGATAGCA
ATGTTAAACAGGGCTGTCCACGTACCCGATCTCGGGTGCAACTTAATCTC
CACACGCCCAGCAACAGATACATCGGGTGAATCGTTCATATACAGTGCCA
ACAAAGCAAGCCTCGAGCTAGGGGAGAAAGAAAGCCTTATCTTCAACGTG
TCAGCATCTTCAGGACTGTATGAGGTGGAGGCCGTTCGGAGTGCTGCGGG
AACAGCATAA
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