mRNA_H-paniculata_contig57544.13322.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A0D1DPX6_USTMA (Retrotransposon HobS hobase n=1 Tax=Ustilago maydis (strain 521 / FGSC 9021) TaxID=237631 RepID=A0A0D1DPX6_USTMA) HSP 1 Score: 63.2 bits (152), Expect = 6.270e-9 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 4 EKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKE 327
+ E W D+GA+ HMT DKT+F Y P+ P +A+ VPVAG G + L++S G + L +HVP LG NL ST P G S ++ K ++E+ +K+
Sbjct: 325 QNETWIIDSGASRHMTGDKTLFSTYGPS-PVQEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFST-PQVQRLGGSINFT--KKTVEIFDKK 428
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: Q2EPY7_USTMD (Hobase n=1 Tax=Ustilago maydis TaxID=5270 RepID=Q2EPY7_USTMD) HSP 1 Score: 63.2 bits (152), Expect = 6.400e-9 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1
Query: 4 EKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKE 327
+ E W D+GA+ HMT DKT+F Y P+ P +A+ VPVAG G + L++S G + L +HVP LG NL ST P G S ++ K ++E+ +K+
Sbjct: 324 QNETWIIDSGASRHMTGDKTLFSTYGPS-PVQEVFVADNRGVPVAGMGNVRLVMSNSKGSRKSITLQDVLHVPGLGNNLFST-PQVQRLGGSINFT--KKTVEIFDKK 427
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A151QW18_CAJCA (Retrotrans_gag domain-containing protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QW18_CAJCA) HSP 1 Score: 62.0 bits (149), Expect = 1.410e-8 Identity = 40/122 (32.79%), Postives = 58/122 (47.54%), Query Frame = 1
Query: 1 GEKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
G+ + W D+GA+DHMT D TVF+ Y+P L IA+G V G G +++ S+ LN ++VP L CNL+S T + N ++ E I N +GLY
Sbjct: 292 GKPKSWIIDSGASDHMTRDLTVFKSYSPCLNNYTVRIADGTLSKVMGKGSVII--------SQNITLNSVLYVPILDCNLLSISKLTRDLKSVTKFFPNLCEFQILESGKTIGNAEECAGLY 405
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A5BWI9_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BWI9_VITVI) HSP 1 Score: 61.6 bits (148), Expect = 2.120e-8 Identity = 41/120 (34.17%), Postives = 57/120 (47.50%), Query Frame = 1
Query: 7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
K+ W D+GA+DHMT D T+F+ Y+ IA+G VAG G +VL SR LN + VP+L CNL+S T + +S+ + + I N SGLY
Sbjct: 538 KKPWRVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCTTNFSSTHCEFQDLDSGKTIGNAEECSGLY 649
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A438IWP5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IWP5_VITVI) HSP 1 Score: 61.6 bits (148), Expect = 2.160e-8 Identity = 42/120 (35.00%), Postives = 58/120 (48.33%), Query Frame = 1
Query: 7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
K+ W D+GA+DHMT D T+F+ Y+ +IA+G VAG G +VL SR LN + VP+L CNL+S T +S+ + + I NV SGLY
Sbjct: 287 KKPWIVDSGASDHMTGDATIFDTYSSCPNNLTVQIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNVEECSGLY 398
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A165M5Y1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M5Y1_9AGAM) HSP 1 Score: 58.9 bits (141), Expect = 2.560e-8 Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 1
Query: 13 HWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSG 273
+WN+DTGAT HMT + F Y+P + + N + AG G ++ + K+ + +L+ +HVP LG NL+S T T G
Sbjct: 62 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLTNDTIIYTAGMGSVMFELVLGESKAPVVVLHNVLHVPQLGSNLLSVYHLTKTKG 146
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A8J2WLN9_9CRUS (Hypothetical protein n=1 Tax=Daphnia galeata TaxID=27404 RepID=A0A8J2WLN9_9CRUS) HSP 1 Score: 60.8 bits (146), Expect = 3.690e-8 Identity = 36/99 (36.36%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 16 WNSDTGATDHMTSDKTVFEDYTPALPGT-MCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASL 309
W +D+GAT HMT +++ +Y P PG+ M G +PV G G++ +L RI ++ +HVPDLG NL S AT+ G I++ NK ++
Sbjct: 345 WFADSGATSHMTDQRSLIFNYKPVTPGSWMVTGIGGATLPVHGQGQVSVLTEGEVESERI--ISPVLHVPDLGTNLFSIVSATEA-GMKAIFNGNKVNI 440
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A438JG64_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JG64_VITVI) HSP 1 Score: 60.8 bits (146), Expect = 3.930e-8 Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 1
Query: 7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
K+ W D+GATDHMT D T+F+ Y+ IA+G VAG G +VL SR LN + VP+L CNL+S T +S+ + + I N SGLY
Sbjct: 64 KKPWIVDSGATDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKTIGNAEECSGLY 175
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A8J6D396_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D396_9ROSI) HSP 1 Score: 60.5 bits (145), Expect = 5.410e-8 Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 16 WNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPAT 261
W D+GA+DHMT + T+F YTP + IA+G + PVAG G + + + L++ +HVP+L CNL+S T
Sbjct: 293 WILDSGASDHMTGNSTLFHTYTPCHDKSRIRIADGSYSPVAGVGEVQITENF--------FLDKVLHVPNLSCNLLSISKLT 366
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Match: A0A438F3H0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438F3H0_VITVI) HSP 1 Score: 60.5 bits (145), Expect = 5.490e-8 Identity = 41/120 (34.17%), Postives = 57/120 (47.50%), Query Frame = 1
Query: 7 KEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRLVLLVSQPGGKSRIAMLNRAVHVPDLGCNLISTRPATDTSGESFIYSANKASLELGEKESLIFNVSASSGLY 366
K+ W D+GA+DHMT D T+F+ Y+ IA+G VAG G +VL SR LN + VP+L CNL+S T +S+ + + +I N SGLY
Sbjct: 340 KKPWIVDSGASDHMTGDATIFDTYSSCPNNLTVRIADGSLSKVAGTGSVVL--------SRDLTLNSVLLVPNLDCNLLSISKLTKEKRCITNFSSTHCEFQDLDSGKMIGNAEECSGLY 451 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57544.13322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig57544.13322.1 >prot_H-paniculata_contig57544.13322.1 ID=prot_H-paniculata_contig57544.13322.1|Name=mRNA_H-paniculata_contig57544.13322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp GEKEHWNSDTGATDHMTSDKTVFEDYTPALPGTMCEIANGIFVPVAGWGRback to top mRNA from alignment at H-paniculata_contig57544:48..452- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig57544.13322.1 ID=mRNA_H-paniculata_contig57544.13322.1|Name=mRNA_H-paniculata_contig57544.13322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig57544:48..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig57544:48..452- >mRNA_H-paniculata_contig57544.13322.1 ID=mRNA_H-paniculata_contig57544.13322.1|Name=mRNA_H-paniculata_contig57544.13322.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig57544:48..452- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |