mRNA_H-paniculata_contig5733.13291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5733.13291.1
Unique NamemRNA_H-paniculata_contig5733.13291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A7R8W6R0_9CRUS (Replication protein A subunit n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W6R0_9CRUS)

HSP 1 Score: 57.0 bits (136), Expect = 5.870e-8
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    4 QVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGG 162
            +VSDFNGRSLSA NST++ INP++ E   LQAW+++ G   + +S++ +G GG
Sbjct:  378 KVSDFNGRSLSALNSTMIQINPDIDEAHRLQAWYTSEGCQQAPRSLTEQGRGG 430
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A453INJ1_AEGTS (Replication protein A subunit n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453INJ1_AEGTS)

HSP 1 Score: 55.1 bits (131), Expect = 2.790e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 141
            L+VSDF G S+S    + LVINPE+PETE+L+AW+ + G G++  SV
Sbjct:  399 LKVSDFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTALASV 445
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A3B6ITQ5_WHEAT (Replication protein A subunit n=8 Tax=Triticinae TaxID=1648030 RepID=A0A3B6ITQ5_WHEAT)

HSP 1 Score: 55.1 bits (131), Expect = 2.790e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 141
            L+VSDF G S+S    + LVINPE+PETE+L+AW+ + G G++  SV
Sbjct:  353 LKVSDFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTTLTSV 399
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A3B6JK64_WHEAT (Replication protein A subunit n=15 Tax=Triticeae TaxID=147389 RepID=A0A3B6JK64_WHEAT)

HSP 1 Score: 55.1 bits (131), Expect = 2.800e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 141
            L+VSDF G S+S    + LVINPE+PETE+L+AW+ + G G++  SV
Sbjct:  383 LKVSDFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTALASV 429
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: S8E2K2_FOMPI (Replication protein A subunit n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8E2K2_FOMPI)

HSP 1 Score: 54.7 bits (130), Expect = 3.820e-7
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 VSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGGG 165
            VSDF GRSLS F+++++ +NP++PE   L+ W+  AGSG ++++ S   +G G
Sbjct:  369 VSDFGGRSLSMFSTSIMQVNPDIPEAHALRGWYDAAGSGQTYQAYSNANAGAG 421
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A4Y9YET0_9APHY (Replication protein A subunit n=2 Tax=Fomitopsidaceae TaxID=1769247 RepID=A0A4Y9YET0_9APHY)

HSP 1 Score: 53.9 bits (128), Expect = 7.150e-7
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    7 VSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGGGS 168
            VSDF GRSLS F ++++  NP++PE   L+ W+  AGS  ++++ S  G+G GS
Sbjct:  368 VSDFGGRSLSMFTTSIMQANPDIPEAHALRGWYDAAGSAQTYQAYSNAGAGAGS 421
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A7R8W5E0_9CRUS (Replication protein A subunit n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W5E0_9CRUS)

HSP 1 Score: 53.5 bits (127), Expect = 9.750e-7
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 QVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGG 162
            +VSDFNGRSLS  N T++ INP++ E   LQAW+++ G   + +S++ +G GG
Sbjct:  290 KVSDFNGRSLSVLNRTMIQINPDIDEAHRLQAWYTSEGCQQAPRSLTEQGRGG 342
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A4P9XSL6_9FUNG (Replication protein A subunit n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XSL6_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 9.780e-7
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    4 QVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVS 144
            +V DF GRSLS  +S++L +NP+VPET  L+ W+ T G  +SF   S
Sbjct:  363 RVGDFQGRSLSVLSSSILSLNPDVPETHRLRGWYDTGGRNASFNGFS 409
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A8J5TA72_ZIZPA (Uncharacterized protein n=4 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5TA72_ZIZPA)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-6
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 141
            L+VSDF G SLS  + + +V NP++PET++L+AW+ + G G+S  SV
Sbjct:  387 LKVSDFQGVSLSTVSKSTIVANPDLPETQQLRAWYDSEGKGTSMASV 433
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BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: RFA1B_ORYSJ (Replication protein A 70 kDa DNA-binding subunit B n=11 Tax=Oryza TaxID=4527 RepID=RFA1B_ORYSJ)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-6
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 141
            L+VSDF G SLS    + +V+NP++PE E+L+AW+ + G G+S  S+
Sbjct:  391 LKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSMASI 437
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R8W6R0_9CRUS5.870e-850.94Replication protein A subunit n=1 Tax=Cyprideis to... [more]
A0A453INJ1_AEGTS2.790e-753.19Replication protein A subunit n=1 Tax=Aegilops tau... [more]
A0A3B6ITQ5_WHEAT2.790e-753.19Replication protein A subunit n=8 Tax=Triticinae T... [more]
A0A3B6JK64_WHEAT2.800e-753.19Replication protein A subunit n=15 Tax=Triticeae T... [more]
S8E2K2_FOMPI3.820e-743.40Replication protein A subunit n=1 Tax=Fomitopsis p... [more]
A0A4Y9YET0_9APHY7.150e-744.44Replication protein A subunit n=2 Tax=Fomitopsidac... [more]
A0A7R8W5E0_9CRUS9.750e-747.17Replication protein A subunit n=1 Tax=Cyprideis to... [more]
A0A4P9XSL6_9FUNG9.780e-748.94Replication protein A subunit n=1 Tax=Thamnocephal... [more]
A0A8J5TA72_ZIZPA1.340e-648.94Uncharacterized protein n=4 Tax=Zizania palustris ... [more]
RFA1B_ORYSJ1.340e-646.81Replication protein A 70 kDa DNA-binding subunit B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5733contigH-paniculata_contig5733:13145..13327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue5e-08
Seed eggNOG ortholog2880.D7FUU1
Preferred nameRFA1
KEGG koko:K07466
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006278,GO:0006279,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007063,GO:0007088,GO:0007127,GO:0007131,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010833,GO:0010948,GO:0016043,GO:0016567,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022402,GO:0022414,GO:0030491,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032392,GO:0032446,GO:0032508,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045184,GO:0045786,GO:0045839,GO:0045875,GO:0045930,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070647,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0071922,GO:0071923,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0098847,GO:0106111,GO:0106112,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902969,GO:1903046,GO:1903047,GO:1903827,GO:1903828,GO:1904356,GO:1904358,GO:1905405,GO:1905412,GO:1905634,GO:2000112,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.DNA recombination
EggNOG OGsCOG1599@1,KOG0851@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03032,ko03400
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930617.331192-CDS-H-paniculata_contig5733:13144..133271622930617.331192-CDS-H-paniculata_contig5733:13144..13327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 13145..13327 +
1691481374.441522-CDS-H-paniculata_contig5733:13144..133271691481374.441522-CDS-H-paniculata_contig5733:13144..13327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 13145..13327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5733.13291.1prot_H-paniculata_contig5733.13291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5733 13145..13327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5733.13291.1

>prot_H-paniculata_contig5733.13291.1 ID=prot_H-paniculata_contig5733.13291.1|Name=mRNA_H-paniculata_contig5733.13291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIK
GSGGGSDGES*
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mRNA from alignment at H-paniculata_contig5733:13145..13327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5733.13291.1 ID=mRNA_H-paniculata_contig5733.13291.1|Name=mRNA_H-paniculata_contig5733.13291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig5733:13145..13327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCAGGTATCGGATTTCAACGGACGATCGCTCAGCGCGTTCAACTCGAC
CGTGCTCGTTATCAACCCCGAGGTGCCTGAGACGGAGGAGCTTCAAGCGT
GGTTCAGCACCGCCGGTTCTGGTTCTAGCTTTAAGAGCGTTTCGATCAAG
GGGTCAGGAGGTGGTAGCGACGGTGAGAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5733:13145..13327+

>mRNA_H-paniculata_contig5733.13291.1 ID=mRNA_H-paniculata_contig5733.13291.1|Name=mRNA_H-paniculata_contig5733.13291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig5733:13145..13327+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCAGGTATCGGATTTCAACGGACGATCGCTCAGCGCGTTCAACTCGAC
CGTGCTCGTTATCAACCCCGAGGTGCCTGAGACGGAGGAGCTTCAAGCGT
GGTTCAGCACCGCCGGTTCTGGTTCTAGCTTTAAGAGCGTTTCGATCAAG
GGGTCAGGAGGTGGTAGCGACGGTGAGAGCTAGCTCCAGGTATCGGATTT
CAACGGACGATCGCTCAGCGCGTTCAACTCGACCGTGCTCGTTATCAACC
CCGAGGTGCCTGAGACGGAGGAGCTTCAAGCGTGGTTCAGCACCGCCGGT
TCTGGTTCTAGCTTTAAGAGCGTTTCGATCAAGGGGTCAGGAGGTGGTAG
CGACGGTGAGAGCTAG
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