prot_H-paniculata_contig5733.13291.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5733.13291.1
Unique Nameprot_H-paniculata_contig5733.13291.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A7R8W6R0_9CRUS (Replication protein A subunit n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W6R0_9CRUS)

HSP 1 Score: 57.0 bits (136), Expect = 5.870e-8
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 0
Query:    2 QVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGG 54
            +VSDFNGRSLSA NST++ INP++ E   LQAW+++ G   + +S++ +G GG
Sbjct:  378 KVSDFNGRSLSALNSTMIQINPDIDEAHRLQAWYTSEGCQQAPRSLTEQGRGG 430          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A453INJ1_AEGTS (Replication protein A subunit n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453INJ1_AEGTS)

HSP 1 Score: 55.1 bits (131), Expect = 2.790e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 47
            L+VSDF G S+S    + LVINPE+PETE+L+AW+ + G G++  SV
Sbjct:  399 LKVSDFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTALASV 445          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A3B6ITQ5_WHEAT (Replication protein A subunit n=8 Tax=Triticinae TaxID=1648030 RepID=A0A3B6ITQ5_WHEAT)

HSP 1 Score: 55.1 bits (131), Expect = 2.790e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 47
            L+VSDF G S+S    + LVINPE+PETE+L+AW+ + G G++  SV
Sbjct:  353 LKVSDFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTTLTSV 399          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A3B6JK64_WHEAT (Replication protein A subunit n=15 Tax=Triticeae TaxID=147389 RepID=A0A3B6JK64_WHEAT)

HSP 1 Score: 55.1 bits (131), Expect = 2.800e-7
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 47
            L+VSDF G S+S    + LVINPE+PETE+L+AW+ + G G++  SV
Sbjct:  383 LKVSDFQGVSVSTVGKSTLVINPELPETEKLRAWYESEGKGTALASV 429          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: S8E2K2_FOMPI (Replication protein A subunit n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8E2K2_FOMPI)

HSP 1 Score: 54.7 bits (130), Expect = 3.820e-7
Identity = 23/53 (43.40%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    3 VSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGGG 55
            VSDF GRSLS F+++++ +NP++PE   L+ W+  AGSG ++++ S   +G G
Sbjct:  369 VSDFGGRSLSMFSTSIMQVNPDIPEAHALRGWYDAAGSGQTYQAYSNANAGAG 421          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A4Y9YET0_9APHY (Replication protein A subunit n=2 Tax=Fomitopsidaceae TaxID=1769247 RepID=A0A4Y9YET0_9APHY)

HSP 1 Score: 53.9 bits (128), Expect = 7.150e-7
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    3 VSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGGGS 56
            VSDF GRSLS F ++++  NP++PE   L+ W+  AGS  ++++ S  G+G GS
Sbjct:  368 VSDFGGRSLSMFTTSIMQANPDIPEAHALRGWYDAAGSAQTYQAYSNAGAGAGS 421          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A7R8W5E0_9CRUS (Replication protein A subunit n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8W5E0_9CRUS)

HSP 1 Score: 53.5 bits (127), Expect = 9.750e-7
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    2 QVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIKGSGG 54
            +VSDFNGRSLS  N T++ INP++ E   LQAW+++ G   + +S++ +G GG
Sbjct:  290 KVSDFNGRSLSVLNRTMIQINPDIDEAHRLQAWYTSEGCQQAPRSLTEQGRGG 342          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A4P9XSL6_9FUNG (Replication protein A subunit n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XSL6_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 9.780e-7
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    2 QVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVS 48
            +V DF GRSLS  +S++L +NP+VPET  L+ W+ T G  +SF   S
Sbjct:  363 RVGDFQGRSLSVLSSSILSLNPDVPETHRLRGWYDTGGRNASFNGFS 409          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: A0A8J5TA72_ZIZPA (Uncharacterized protein n=4 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5TA72_ZIZPA)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-6
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 0
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 47
            L+VSDF G SLS  + + +V NP++PET++L+AW+ + G G+S  SV
Sbjct:  387 LKVSDFQGVSLSTVSKSTIVANPDLPETQQLRAWYDSEGKGTSMASV 433          
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Match: RFA1B_ORYSJ (Replication protein A 70 kDa DNA-binding subunit B n=11 Tax=Oryza TaxID=4527 RepID=RFA1B_ORYSJ)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-6
Identity = 22/47 (46.81%), Postives = 34/47 (72.34%), Query Frame = 0
Query:    1 LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSV 47
            L+VSDF G SLS    + +V+NP++PE E+L+AW+ + G G+S  S+
Sbjct:  391 LKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSMASI 437          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5733.13291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R8W6R0_9CRUS5.870e-850.94Replication protein A subunit n=1 Tax=Cyprideis to... [more]
A0A453INJ1_AEGTS2.790e-753.19Replication protein A subunit n=1 Tax=Aegilops tau... [more]
A0A3B6ITQ5_WHEAT2.790e-753.19Replication protein A subunit n=8 Tax=Triticinae T... [more]
A0A3B6JK64_WHEAT2.800e-753.19Replication protein A subunit n=15 Tax=Triticeae T... [more]
S8E2K2_FOMPI3.820e-743.40Replication protein A subunit n=1 Tax=Fomitopsis p... [more]
A0A4Y9YET0_9APHY7.150e-744.44Replication protein A subunit n=2 Tax=Fomitopsidac... [more]
A0A7R8W5E0_9CRUS9.750e-747.17Replication protein A subunit n=1 Tax=Cyprideis to... [more]
A0A4P9XSL6_9FUNG9.780e-748.94Replication protein A subunit n=1 Tax=Thamnocephal... [more]
A0A8J5TA72_ZIZPA1.340e-648.94Uncharacterized protein n=4 Tax=Zizania palustris ... [more]
RFA1B_ORYSJ1.340e-646.81Replication protein A 70 kDa DNA-binding subunit B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..49
e-value: 1.4E-10
score: 42.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5733contigH-paniculata_contig5733:13145..13327 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5733.13291.1mRNA_H-paniculata_contig5733.13291.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5733 13145..13327 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5733.13291.1 ID=prot_H-paniculata_contig5733.13291.1|Name=mRNA_H-paniculata_contig5733.13291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
LQVSDFNGRSLSAFNSTVLVINPEVPETEELQAWFSTAGSGSSFKSVSIK
GSGGGSDGES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold