prot_H-paniculata_contig5725.13274.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5725.13274.1
Unique Nameprot_H-paniculata_contig5725.13274.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length257
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5725.13274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 65..97
e-value: 6.8E-4
score: 17.6
coord: 100..131
e-value: 1.6E-5
score: 22.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 96..130
score: 10.435
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 131..165
score: 7.739
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 26..60
score: 5.053
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 61..95
score: 9.208
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 30..235
e-value: 4.3E-29
score: 103.8
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 76..181
e-value: 8.1E-9
score: 35.2
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 45..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5725contigH-paniculata_contig5725:3978..6635 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5725.13274.1mRNA_H-paniculata_contig5725.13274.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5725 3613..6636 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5725.13274.1 ID=prot_H-paniculata_contig5725.13274.1|Name=mRNA_H-paniculata_contig5725.13274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=257bp
MGAQRRGCNEGTPQRKGKGERVRAVLPDPVVNEIKWWGRRGMWQKAEEAL
EKTIRAGGPPNISAYEAAIFAMGHSTKWQKALLLLDKMVANGIEPDERCY
AEAIKACGKAGKFDEAVGLLETMVKNDSSPSLAIFNMVLESCLIQKRAEQ
VPGVLVKMRQCGVQPNDETDRLAMLAVVAGRDWSQIVAMWKTLTKGGNRV
RGLKPKELLTIAKALGGLGEWKMVLQVLDVSALERYDGLPLLTLERCLNV
LGRGCR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long