mRNA_H-paniculata_contig5685.13229.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5685.13229.1
Unique NamemRNA_H-paniculata_contig5685.13229.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 5.790e-80
Identity = 140/338 (41.42%), Postives = 204/338 (60.36%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCT-----RSTTGAMF 999
            +G  +VFK K DG+FKARLVV G   +   D G ++APV R+ S R+  A+   NNW +Y LD+  AFLN      V+ + APG    +S TG+P V  L RS+ GL Q+P+LWN T+D  L   G+  T SDPCVY   + +  ++L+++VDDIL+TG   +L+   + +L ++F +TD+GEV  ILG++V R+ + GTL +SQ  YV + L+RF M  ANP    G   + ST      +L     K YQ+M GS++ L QCT+FD+ +  +Q ++  S P Q ++ A   +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG +F
Sbjct:   25 LGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLF 362          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 1.920e-79
Identity = 142/338 (42.01%), Postives = 205/338 (60.65%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCT-----RSTTGAMF 999
            +G  +VFK K DG+FKARLVV G   +   D G ++APV R+ S R+  A+   NNW +Y LD+  AFLN      V+ + APG    +S TG+P V  L RS+ GL Q+P+LWN T+D  L   G+  T SDPCVY   + +  ++L+++VDDIL+TG   +L+   + +L ++F +TD+GEV  ILG++V R+ + GTL +SQ  YV + L+RF M  ANP   PG   + ST      +L     K YQ+M GS++ L QCTRFD+ +  +Q ++  S P Q ++ A   +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG +F
Sbjct:  389 LGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLF 726          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 9.360e-79
Identity = 140/338 (41.42%), Postives = 204/338 (60.36%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCT-----RSTTGAMF 999
            +G  +VFK   DG+FKARLVV G   +   D G ++APV R+ S R+  A+   NNW +Y LD+  AFLN      V+ + APG    +S TG+P V  L RS+ GL Q+ +LWN T+D  L  +G+  T SDPCVY   + +  ++L+++VDDIL+TG   +L+   + +L ++F +TD+GEV  ILG++V R+ + GTL +SQ  YV + L+RF M  ANP   PG   + ST      +L     K YQ+M GS++ L QCTRFD+ +  +Q ++  S P Q ++ A   +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG +F
Sbjct:  233 LGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLF 570          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.540e-77
Identity = 140/338 (41.42%), Postives = 203/338 (60.06%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCT-----RSTTGAMF 999
            +G  +VFK K DG+FKA LVV G   +   D GS++APV R+ S R+   +   NNW +Y LD+ VAFLN      V+ + APG    +S TG+P V  L RS+ GL Q+P+LWN T++  L+  G+  T  DPCVY   + +  ++L+++VDDIL+TG  D+ L+  + +L ++F +TD+GEV  ILG++V R+ + GTL +SQ  YV + L+RF M  ANP    G   + ST      +L     K YQ+M  S++ L QCTRFD+ +  +Q ++  S P Q +L A   +LRYLRG P +PI Y R +  L   +D+S+       RSTTG +F
Sbjct:  126 LGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLF 462          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 3.690e-77
Identity = 141/334 (42.22%), Postives = 198/334 (59.28%), Query Frame = 1
Query:   13 WVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCT-----RSTTGAMF 999
            +VFK KAD +FKARLV  G   +     G  +APV RL S R+L A+A  + W VY LD+  AFLN      V+ + APG E+ D TTG+  V  L +S+ GL Q+PSLWN  I++ L   G+  T SDPCVY   + D   +L+++VDDIL+TG   +++   + +LM+ F +TD+GEV  ++G+EV R+ + GTL +SQ  Y    L R+ M  ANP   PG   + ST      LL     + +QA+ GSL+ L QCTR+D+ + V Q  R  + P Q H+ A   +LRYLRG PD+PI Y + K  L  ++D+S+       RSTTG +F
Sbjct:  270 FVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLF 603          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 1.330e-76
Identity = 136/327 (41.59%), Postives = 201/327 (61.47%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNM----PSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASY 969
            IG  W++K KA G  KARL+VQGW  +H IDCG T+APV R  SQ +L+A+A    + V  +D+  AFL   ++E V+ +QA G+E  D  TG P VM L +S+ GL+Q+P  + +     ++ +GFT+ +SDPCVY  G   TY +L ++VDD  + G T  ++   + QL +KF +TD G   L+LGME+  ++  G + +SQH YV++ LD++ M    P+A P   P I+ +P     +A  L     K YQ +VGSL+ LT  TR++I + V+   R M+ PT QH+V   R+LRYLRG PD+P+ + R + +L  Y DAS+
Sbjct:  937 IGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEI--SQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEP----ENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASF 1257          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 3.550e-72
Identity = 135/338 (39.94%), Postives = 196/338 (57.99%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCT-----RSTTGAMF 999
            +G  + FK   DG+FKARLVV G   +   D G ++APV R+ S R+  A+   NNW +Y LD+  AFLN      V+ + APG    +  TG+P +  L RS+ GL Q P+LW  T+D  L   G+  T SDPCVY   + +  ++L+++VDDIL+TG   +L+   + +L ++F +TD+GEV  ILG++V R+ + GTL +SQ  YV + L+RF M  ANP   PG   + ST      +L     K YQ+M GS++ L QCTRFD+ +  +Q ++  S P Q ++ A   +LRY RG P +PI   R    LV  + +S+       RSTTG +F
Sbjct:  432 LGTKFAFKRTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNYATGEPMMYELERSLYGLSQYPALWKDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYRRGNPVLPIVSKRGHFRLVALTGSSFGANPGNGRSTTGYLF 769          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 6.130e-72
Identity = 134/326 (41.10%), Postives = 192/326 (58.90%), Query Frame = 1
Query:   13 WVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCTRSTTG 990
            WVFK KADG FK R+V QGW+    +DCGST+APV R++S R++  +    N     +D+  AFL   ++E VF +Q PGFE  D   G   VM L +S+ GL Q+P  W +TID  L  +GF +  SDPCVY    N   I L+L+VDD+L+ G     +   + +L  +F +TDLGE SL+LGME+ R+++  TL +SQ  Y  S L+RF +  + PT  PG  ++ S      +LLD   T++YQ +VGSL+ + Q  R+DI +   Q AR M+ P++ H+VA    LRYL G  D  ITY +   +L  +SD+++      G
Sbjct: 1202 WVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNG 1526          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 6.270e-72
Identity = 140/345 (40.58%), Postives = 202/345 (58.55%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVG-------YSDASYCT-----RSTTGAMF 999
            +G  +VFK K DG+FKARL V G  H+ E       APV R+ S R+  A+   NNW +Y LD+  AFLN      V+ + APG    +S T +P V  L RS+ GL Q+P+LWN T+D  L   G+  T SDPCVY   + ++ ++ S++VDDIL+TG   +L+   + +L ++F +TD+GEV  ILG++V R+ + GTL +SQ  YV + L+RF M  ANP   PG   + ST      +L     K YQ+M GS++ L QCTRFD+ +  +Q ++  S P Q ++ A   +LRYLRG P +PI Y R ++ L         ++D+S+       RSTTG +F
Sbjct:  614 LGTKFVFKKKLDGRFKARLAVGG--HRQEPGQDYRNAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLF 956          
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE)

HSP 1 Score: 244 bits (624), Expect = 6.320e-72
Identity = 138/336 (41.07%), Postives = 197/336 (58.63%), Query Frame = 1
Query:    1 IGMPWVFKAKADGKFKARLVVQGWSHKHEIDCGSTFAPV*RLESQRLLLALATANNWTVYALDIQVAFLNGKLKESVFCKQAPGFEKMDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVYSKGTN-DTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLILGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTASNSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQHLVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCT-----RSTTG 990
            +G  +VF  K DG+FKARLVV G       D G ++APV R+ S R+  A+   NNW +Y LD+  AFLN      V+ + APG    +S TG+P V  L RS+ GL Q+P+LWN T+D  L   G+  T SDPCVY   T+ +T ++L++ VDDIL+TG   +L+   + +L N+F +TD+GEV  ILG++V R+ + GTL +SQ   V + L+RF M  ANP    G   + ST       L       YQ+M GS++ + QCTRFD+ +  +  ++  S P Q ++ A   +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG
Sbjct:  332 LGTKFVFTKKLDGRFKARLVVGGHRQAPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNTIVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHNVNTLLERFGMQEANPVSTSGYGAEISTNQPQDQFLGPMV-NFYQSMTGSILYVAQCTRFDLSYAALPLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIAYKRGQFRLAAFTDSSFGANPDNGRSTTG 666          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5685.13229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQD0_9PHAE5.790e-8041.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.920e-7942.01Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE9.360e-7941.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDU8_9PHAE1.540e-7741.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE3.690e-7742.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KY84_9PHAE1.330e-7641.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K7T8_9PHAE3.550e-7239.94Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KJH6_9PHAE6.130e-7241.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE6.270e-7240.58Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KS50_9PHAE6.320e-7241.07Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5685contigH-paniculata_contig5685:11538..12536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score147.5
Seed ortholog evalue8.1e-33
Seed eggNOG ortholog4558.Sb07g003556.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size999
Cds size738
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930609.1073747-CDS-H-paniculata_contig5685:11537..122751622930609.1073747-CDS-H-paniculata_contig5685:11537..12275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5685 11538..12275 -
1691481370.6118445-CDS-H-paniculata_contig5685:11537..122751691481370.6118445-CDS-H-paniculata_contig5685:11537..12275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5685 11538..12275 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930609.130271-UTR-H-paniculata_contig5685:12275..125361622930609.130271-UTR-H-paniculata_contig5685:12275..12536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5685 12276..12536 -
1691481370.622062-UTR-H-paniculata_contig5685:12275..125361691481370.622062-UTR-H-paniculata_contig5685:12275..12536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5685 12276..12536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5685.13229.1prot_H-paniculata_contig5685.13229.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5685 11538..12275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5685.13229.1

>prot_H-paniculata_contig5685.13229.1 ID=prot_H-paniculata_contig5685.13229.1|Name=mRNA_H-paniculata_contig5685.13229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MDSTTGKPYVMSLTRSIDGLRQTPSLWNHTIDNELRSMGFTSTISDPCVY
SKGTNDTYILLSLFVDDILVTGPTDKLLMGFRNQLMNKFTITDLGEVSLI
LGMEVLRNKQTGTLQLSQHTYVLSFLDRFNMPSANPTKAPGIKTDPSTAS
NSASLLDAAATKEYQAMVGSLILLTQCTRFDICFNVIQAARFMSAPTQQH
LVAVNRILRYLRGYPDIPITYSRSKVELVGYSDASYCTRSTTGAMF
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mRNA from alignment at H-paniculata_contig5685:11538..12536-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5685.13229.1 ID=mRNA_H-paniculata_contig5685.13229.1|Name=mRNA_H-paniculata_contig5685.13229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=999bp|location=Sequence derived from alignment at H-paniculata_contig5685:11538..12536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGCATGCCCTGGGTGTTTAAAGCGAAAGCTGACGGAAAATTCAAGGC TCGACTAGTGGTACAAGGTTGGTCGCACAAGCACGAAATAGACTGCGGGA GCACTTTTGCACCAGTATGAAGACTGGAGAGCCAGAGACTGCTGCTCGCG CTTGCAACAGCAAATAATTGGACAGTCTACGCATTGGATATTCAAGTTGC TTTTCTAAACGGCAAACTGAAGGAAAGCGTCTTCTGTAAACAAGCACCTG GCTTCGAGAAGATGGACTCCACTACAGGAAAACCCTACGTGATGAGTTTA ACGAGATCAATAGATGGCTTGCGCCAAACCCCAAGCCTTTGGAACCATAC CATCGACAACGAGCTGAGGAGCATGGGCTTTACATCGACCATCTCGGATC CTTGTGTGTACAGTAAAGGAACCAACGACACCTACATTCTGCTCAGCCTT TTCGTCGACGACATCCTAGTTACAGGACCAACGGACAAACTACTAATGGG TTTTCGCAACCAACTCATGAACAAGTTCACCATCACGGACCTTGGAGAGG TATCGCTTATTCTTGGAATGGAGGTACTACGCAACAAACAAACTGGCACC CTTCAGCTATCACAGCATACGTACGTACTGTCCTTTTTGGACAGGTTCAA CATGCCATCGGCAAATCCTACCAAGGCGCCAGGTATTAAAACGGACCCAA GCACTGCTAGTAATAGTGCCAGCCTACTGGATGCAGCAGCTACGAAGGAG TACCAAGCCATGGTAGGGAGTCTCATCCTCCTGACTCAGTGTACAAGATT TGACATCTGCTTCAACGTCATCCAAGCAGCACGATTCATGAGTGCACCAA CCCAACAGCACTTGGTGGCAGTAAATCGCATTCTTCGCTATTTGCGGGGC TACCCTGACATTCCAATTACCTATAGTAGAAGCAAAGTGGAACTGGTCGG CTACTCTGACGCATCGTACTGTACAAGGTCTACAACGGGCGCGATGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig5685:11538..12536-

>mRNA_H-paniculata_contig5685.13229.1 ID=mRNA_H-paniculata_contig5685.13229.1|Name=mRNA_H-paniculata_contig5685.13229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig5685:11538..12536- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTCCACTACAGGAAAACCCTACGTGATGAGTTTAACGAGATCAAT
AGATGGCTTGCGCCAAACCCCAAGCCTTTGGAACCATACCATCGACAACG
AGCTGAGGAGCATGGGCTTTACATCGACCATCTCGGATCCTTGTGTGTAC
AGTAAAGGAACCAACGACACCTACATTCTGCTCAGCCTTTTCGTCGACGA
CATCCTAGTTACAGGACCAACGGACAAACTACTAATGGGTTTTCGCAACC
AACTCATGAACAAGTTCACCATCACGGACCTTGGAGAGGTATCGCTTATT
CTTGGAATGGAGGTACTACGCAACAAACAAACTGGCACCCTTCAGCTATC
ACAGCATACGTACGTACTGTCCTTTTTGGACAGGTTCAACATGCCATCGG
CAAATCCTACCAAGGCGCCAGGTATTAAAACGGACCCAAGCACTGCTAGT
AATAGTGCCAGCCTACTGGATGCAGCAGCTACGAAGGAGTACCAAGCCAT
GGTAGGGAGTCTCATCCTCCTGACTCAGTGTACAAGATTTGACATCTGCT
TCAACGTCATCCAAGCAGCACGATTCATGAGTGCACCAACCCAACAGCAC
TTGGTGGCAGTAAATCGCATTCTTCGCTATTTGCGGGGCTACCCTGACAT
TCCAATTACCTATAGTAGAAGCAAAGTGGAACTGGTCGGCTACTCTGACG
CATCGTACTGTACAAGGTCTACAACGGGCGCGATGTTTATGGACTCCACT
ACAGGAAAACCCTACGTGATGAGTTTAACGAGATCAATAGATGGCTTGCG
CCAAACCCCAAGCCTTTGGAACCATACCATCGACAACGAGCTGAGGAGCA
TGGGCTTTACATCGACCATCTCGGATCCTTGTGTGTACAGTAAAGGAACC
AACGACACCTACATTCTGCTCAGCCTTTTCGTCGACGACATCCTAGTTAC
AGGACCAACGGACAAACTACTAATGGGTTTTCGCAACCAACTCATGAACA
AGTTCACCATCACGGACCTTGGAGAGGTATCGCTTATTCTTGGAATGGAG
GTACTACGCAACAAACAAACTGGCACCCTTCAGCTATCACAGCATACGTA
CGTACTGTCCTTTTTGGACAGGTTCAACATGCCATCGGCAAATCCTACCA
AGGCGCCAGGTATTAAAACGGACCCAAGCACTGCTAGTAATAGTGCCAGC
CTACTGGATGCAGCAGCTACGAAGGAGTACCAAGCCATGGTAGGGAGTCT
CATCCTCCTGACTCAGTGTACAAGATTTGACATCTGCTTCAACGTCATCC
AAGCAGCACGATTCATGAGTGCACCAACCCAACAGCACTTGGTGGCAGTA
AATCGCATTCTTCGCTATTTGCGGGGCTACCCTGACATTCCAATTACCTA
TAGTAGAAGCAAAGTGGAACTGGTCGGCTACTCTGACGCATCGTACTGTA
CAAGGTCTACAACGGGCGCGATGTTT
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