prot_H-paniculata_contig5674.13212.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5674.13212.1
Unique Nameprot_H-paniculata_contig5674.13212.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length194
Homology
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BLAST of mRNA_H-paniculata_contig5674.13212.1 vs. uniprot
Match: A0A6H5KCM2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.000e-10
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0 
Query:   59 QKLMINKSCTFCSRRKKKCDGDGINSCSFCIKKGQTQCVYIARASQKSKSKRHANAP 115
            +K  I KSC FC+ RKK+CDGDG+N CS+CI K    C+Y  R  QK ++++   AP
Sbjct:   41 KKTTIRKSCDFCNGRKKRCDGDGVNRCSYCIIKKNPHCIYSPRRPQKPRARKAPAAP 97
[Close]
BLAST of mRNA_H-paniculata_contig5674.13212.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.110e-6
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0 
Query:   45 GPSKLEGV---SRGRPYQKLMINKSCTFCSRRKKKCDGDGINSCSFCIKKGQTQCVYIARASQKSKSK 109
            GPS    V    R R  Q +++ KSC FC +R+K+CDG     CSFCI+KG+ +C Y  R S  SKSK
Sbjct:   79 GPSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCIEKGRPECHYSMR-SLPSKSK 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5674.13212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCM2_9PHAE3.000e-1049.12Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K678_9PHAE2.110e-647.06Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 61..107
e-value: 7.6E-5
score: 32.1
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 65..106
e-value: 5.8E-7
score: 29.5
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 66..96
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 66..98
score: 9.556
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 64..154
e-value: 5.3E-7
score: 31.9
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 61..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5674contigH-paniculata_contig5674:10836..13373 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5674.13212.1mRNA_H-paniculata_contig5674.13212.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5674 10750..13685 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5674.13212.1 ID=prot_H-paniculata_contig5674.13212.1|Name=mRNA_H-paniculata_contig5674.13212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MASLKAMKSFDGIPLVPLQAPSYAASRTAAVVARAEESNPELAAGPSKLE
GVSRGRPYQKLMINKSCTFCSRRKKKCDGDGINSCSFCIKKGQTQCVYIA
RASQKSKSKRHANAPKKLVGKAHKESADLQERDLTTAQNQHLQRLKHARL
VRSTNFPKSPPPCITDDAWPISSIIYQSGNRVVHLESMWDTLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf