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Homology
BLAST of mRNA_H-paniculata_contig5674.13212.1 vs. uniprot
Match: A0A6H5KCM2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM2_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 1.810e-9 Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 3
Query: 261 QKLMINKSCTFCSRRKKKCDGDGINSCSFCIKKGQTQCVYIARASQKSKSKRHANAP 431
+K I KSC FC+ RKK+CDGDG+N CS+CI K C+Y R QK ++++ AP
Sbjct: 41 KKTTIRKSCDFCNGRKKRCDGDGVNRCSYCIIKKNPHCIYSPRRPQKPRARKAPAAP 97
BLAST of mRNA_H-paniculata_contig5674.13212.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.440e-5 Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 3
Query: 219 GPSKLEGV---SRGRPYQKLMINKSCTFCSRRKKKCDGDGINSCSFCIKKGQTQCVYIARASQKSKSK 413
GPS V R R Q +++ KSC FC +R+K+CDG CSFCI+KG+ +C Y R S SKSK
Sbjct: 79 GPSSTGNVPSKERRRHPQTIVLKKSCDFCFKRRKRCDGRAQRRCSFCIEKGRPECHYSMR-SLPSKSK 145
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 980 |
| Cds size | 582 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5674.13212.1 >prot_H-paniculata_contig5674.13212.1 ID=prot_H-paniculata_contig5674.13212.1|Name=mRNA_H-paniculata_contig5674.13212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=194bp
MASLKAMKSFDGIPLVPLQAPSYAASRTAAVVARAEESNPELAAGPSKLE
GVSRGRPYQKLMINKSCTFCSRRKKKCDGDGINSCSFCIKKGQTQCVYIA
RASQKSKSKRHANAPKKLVGKAHKESADLQERDLTTAQNQHLQRLKHARL
VRSTNFPKSPPPCITDDAWPISSIIYQSGNRVVHLESMWDTLF* back to topmRNA from alignment at H-paniculata_contig5674:10750..13685+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5674.13212.1 ID=mRNA_H-paniculata_contig5674.13212.1|Name=mRNA_H-paniculata_contig5674.13212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2936bp|location=Sequence derived from alignment at H-paniculata_contig5674:10750..13685+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGACTGAACCAGGTTCTGGCGGCAAATTACAGTATTGAAGAACCTGCG
AAAGTCTTATCCCATTTCGCACGATATATACAATAGATGGCTAGTCTGAA
GGCGATGAAATCCTTCGATGGCATCCCACTCGTGCCGCTTCAAGCACCTA
GTTATGCGGCCTCCCGCACTGCTGCCGTGGTTGCGAGGGCTGAAGAAAGC
AATCCTGAGTTAGCAGCTGGTCCTTCCAAATTGGAGGGTGTAAGCAGGTA
CGGTGTATTGTAAACGCTTTTGTTTGCAGATGTGGCGAGAGAATCGAATG
GTGAACCGTGTGTGCAATGCTCTTCGGAGGATAGAGTTTAAGTGCATGTC
ACTCTGTCAAACGCGTGGTCGACACGATTCTAGTACCAAATTATCTTGTG
GTTGTGATGACTGAGTTGCACCTCGATAAAGCTGGACGCTATTTCGGAAT
AAGAAAAGCTTCTGACCGTCTGGCGACAACTACACAAAAATAAGGTATAT
TCAGCATCTTCAAGTTTCTGGATTATCCACAAACTGAATGAACCAGAAGG
TGCTAGTTCAGCCTTGCAGTGCAGGAGGCTGTACTATGGTACTATACAGA
TATATACCCCCAAGATTGTAGATTCGGGCTAACCGTGCATTTTTGTTTAC
CAAACGGCCAATCAAATACATCGTGTTTCCAATCCATCTGCCGACTAGTT
TTGGGGTCGCAAAGTCCCTATAGAGATCCTTCAACGCTGCGGGGAGTCGA
TCAGGCGTGGTCAGTTCATATGCGGACTTGGGTGTTTTTGGGGGCGACAT
CCTGTTGGACTGGCTGTATTTTGTGGGCGTAACGGGCGCATAGTCCGACC
GTCGGGACGAGAGCGATGGGAGCAAATACAATGCCTATAGTAGTCGCTGC
CTCTGTGGTTGTCGCCGATTTTTTCAACAACGATACAGACGCAGTTGGAC
GACAACTCCTTTGTGTATTTTGCCGTTTGCGCTGTCCGTGGTTGTCGGAA
CGGCGTCGTGAAAACATGGCGTTTTTTTAATTCACTTCCTGCTGGCCCTC
CTGTACACAGTCAGTCGAATCATGTGGTTTGTACTTTGCGTTTCGATCAG
GTGCCTGCTGTCGTGGAATGCTCGACCATGTCAACTGCTGTCTGTGTTTT
CTATCTGAAGAGTTCCATTTCTCCGTAAGCCCGCTTGTTATAGTCTCGGG
AAAAAGCTTCTCTGAAAATAATTCGGGCATTTTTTTCTGTGAAATTTCCT
GAACGGGCTCGGTATAGGGCCATTTTCCGGGAAAAGCTCTCCGAGATTGG
GGTCCTTTTCCATCGACGTGCCTTTTCTCCTCATCTCCGGAGGGACTTGG
CGGGAACCGGCGGCAGAACGGTTACGTATACGGCCAGCGGAAGCTGTGTT
CCATACCGCGAGAATGTTGGGCTGTCGGTTGCGAAAACGTTAGATAGAGA
CAGGGGTTTGTCACATTCAACATAAGCATATTGCATAGCATGGTATACAC
CTTGCTGCTGGAACAGAAATCATAGTTGATGTCTTGTTATATATACGTGA
TAGTGAGGTACTCTGCGCCGATGAAACATGTACGCGCAGGGGGAGACCGT
ACCAGAAGCTGATGATCAACAAGAGCTGCACGTTCTGTAGCCGTAGAAAG
AAGAAGTGCGATGGTGACGGCATCAACAGCTGCAGGTGTCGTGTACGCTC
GATTATCTCTGGTATTAACCTTATCGTCACGTTTGCAGTTATATCTCATG
AACGCAATAATCGAAGGAGATGATGATGTTAAGGGCAACATGCCACAATG
GCGCACCTTCTCAACGGCATGATTGAGGTTGCACAATTGTCTGGCACGGA
CATTGGTTGACTCGTCGAAATGCCGTAGAGTTGAGCTCTATTACTCCATA
GACCACTCGGGCGTTTCCATAACATTCGTGTGTAGAAGTCGCCCTGTGTC
GTACATGATTCTCTCCGGTTCCCAAATAGATTAAGCGATTTATCTCCGTT
GCCCGCCAACTCTAGAACTACCGCCCCTACGTATGCGTCCAGCTTCTGTA
TAAAGAAGGGTCAAACACAATGTGTCTACATCGCGAGGGCGTCACAAAAG
TCTAAGTCCAAACGGCACGCCAATGCCCCGAAGAAACTTGTGGGAAAAGC
GCACAAAGAATCCGCGGATCTGCAGGAGAGGGATTTGACAACTGCTCAAA
ACCAGCACCTCCAGAGGCTCAAGCATGCTCGACTTGTCAGAAGCACAAAC
TTCCCAAAGAGGTGCAGTATGGGTTAGATGTACTACACACACAATATGTC
CTCTTTTTGTGTTGCGTCGCATTTTGTACCGTCCTGCATTACTGCCACTG
ACTAGAGATGCCACAAACAACGTTGTTCTGGAACATGATAGGCAATAGAA
CGACGTTTTAATTTTTTTTTTCTTGTGCACGGGTGCTTTTCTGATCAATT
GTGCCATTTCAATTGTTACGTTTCTCGGGCGACGCTTGACCCTCCTCTCT
CACCGACGCGGGCCACAGTCCGCCTCCGTGCATCACCGACGACGCATGGC
CAATATCTTCGATCATTTACCAATCCGGCAACAGAGTGGTTCACCTTGAA
TCCATGTGGGATACTCTTTTCTAGGGCCGTTCGCGTTTGTCACAACGGAA
GATGACGCCATAATAATACACGCCAAATGCTGGGAGCCCTGTCAAACGAG
GCTGAACGGGACCGAAAATTTATTGGTAAGAGACACAATATGCACAAAGG
TATTTGTGGCACAGTCAACGGTCATCCCCCAACGAAGTGTAGCGCCGTCC
AGTGGATTGGGTCTGAGAAGGCCCTGGCGGGTATTATGTGATGGATTGAC
TCCGCGGTTTGTTTTGTTACATTCCAGCAGTGGGGTTGCTGGGACGTGCT
TGATCACTTCCGTGTTGAGTTGGGTGAACTAATAAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig5674:10750..13685+ >mRNA_H-paniculata_contig5674.13212.1 ID=mRNA_H-paniculata_contig5674.13212.1|Name=mRNA_H-paniculata_contig5674.13212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at H-paniculata_contig5674:10750..13685+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAGTCTGAAGGCGATGAAATCCTTCGATGGCATCCCACTCGTGCC
GCTTCAAGCACCTAGTTATGCGGCCTCCCGCACTGCTGCCGTGGTTGCGA
GGGCTGAAGAAAGCAATCCTGAGTTAGCAGCTGGTCCTTCCAAATTGGAG
GGTGTAAGCAGATGGCTAGTCTGAAGGCGATGAAATCCTTCGATGGCATC
CCACTCGTGCCGCTTCAAGCACCTAGTTATGCGGCCTCCCGCACTGCTGC
CGTGGTTGCGAGGGCTGAAGAAAGCAATCCTGAGTTAGCAGCTGGTCCTT
CCAAATTGGAGGGTGTAAGCAGGGGGAGACCGTACCAGAAGCTGATGATC
AACAAGAGCTGCACGTTCTGTAGCCGTAGAAAGAAGAAGTGCGATGGTGA
CGGCATCAACAGCTGCAGGGGGAGACCGTACCAGAAGCTGATGATCAACA
AGAGCTGCACGTTCTGTAGCCGTAGAAAGAAGAAGTGCGATGGTGACGGC
ATCAACAGCTGCAGCTTCTGTATAAAGAAGGGTCAAACACAATGTGTCTA
CATCGCGAGGGCGTCACAAAAGTCTAAGTCCAAACGGCACGCCAATGCCC
CGAAGAAACTTGTGGGAAAAGCGCACAAAGAATCCGCGGATCTGCAGGAG
AGGGATTTGACAACTGCTCAAAACCAGCACCTCCAGAGGCTCAAGCATGC
TCGACTTGTCAGAAGCACAAACTTCCCAAAGAGCTTCTGTATAAAGAAGG
GTCAAACACAATGTGTCTACATCGCGAGGGCGTCACAAAAGTCTAAGTCC
AAACGGCACGCCAATGCCCCGAAGAAACTTGTGGGAAAAGCGCACAAAGA
ATCCGCGGATCTGCAGGAGAGGGATTTGACAACTGCTCAAAACCAGCACC
TCCAGAGGCTCAAGCATGCTCGACTTGTCAGAAGCACAAACTTCCCAAAG
AGTCCGCCTCCGTGCATCACCGACGACGCATGGCCAATATCTTCGATCAT
TTACCAATCCGGCAACAGAGTGGTTCACCTTGAATCCATGTGGGATACTC
TTTTCTAGTCCGCCTCCGTGCATCACCGACGACGCATGGCCAATATCTTC
GATCATTTACCAATCCGGCAACAGAGTGGTTCACCTTGAATCCATGTGGG
ATACTCTTTTCTAG back to top
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