mRNA_H-paniculata_contig5671.13208.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: A0A6H5L229_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE) HSP 1 Score: 274 bits (700), Expect = 6.510e-76 Identity = 186/344 (54.07%), Postives = 211/344 (61.34%), Query Frame = 1
Query: 799 HPGPIDNSALVLEAGAPGTILGVGRRLRMRLVRGYHFVLVPQEAWSALHAWYGGGPVLPRQLVPVKDSTSGHVVYEPQLYPEFSLLDPVLRANSMPLPAASSASSCSTRQNQNRNHPASSSRPDFKDSSCDAATMADGGDDEMPXXXXXXXXXXXXXXXXXXXXXXNGYH-------PGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGL---CAACGRHAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLCGGRDPQAALAMAKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
HPGPIDNS LVL+AG PGTI G GRRLR+RLVRGYHFVLVPQEAW ALHAWYGGGP LPR LVP++DS SG VVYEPQL+PEFS LDPVLR SA+ CS+ N + + S DF D +A+G E NG P XXXXXXXXXXXXXXXXXXXXXXXX +G CAACG K+KC C K HRV YCS +CQ+AHWR+HKK CGG+ L++AKRGKAGL NLGNTCFLNSAVQCLSHVQPLT+H+L+NAF+ D+N +NPLG
Sbjct: 724 HPGPIDNSELVLDAGTPGTIPGTGRRLRLRLVRGYHFVLVPQEAWIALHAWYGGGPALPRALVPIRDSDSGRVVYEPQLFPEFSRLDPVLR----------SATVCSSGIVGNNDD--APSNEDFASDKEDGP-IANGSPVEENPLVAEVAAAADSKEDTGGSVDGNGEGGESTGPPPAPTEAASPAPPGAVAEGPQENRSGXXXXXXXXXXXXXXXXXXXXXXXXGSVDKKTKKTGDAWYPCAACGAPCKKKCTSCSKTQHRVSYCSPACQKAHWRFHKKFCGGKGSGTGLSLAKRGKAGLDNLGNTCFLNSAVQCLSHVQPLTRHVLSNAFQEDLNLTNPLG 1054
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: D7FSH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH2_ECTSI) HSP 1 Score: 263 bits (672), Expect = 2.110e-72 Identity = 195/348 (56.03%), Postives = 222/348 (63.79%), Query Frame = 1
Query: 799 HPGPIDNSALVLEAGAPGTILGVGRRLRMRLVRGYHFVLVPQEAWSALHAWYGGGPVLPRQLVPVKDSTSGHVVYEPQLYPEFSLLDPVLRANSMPLPAASSASSCSTRQNQNRNHPASSSRPDFKDSSCDAATMADGGDDEMPXXXXXXXXXXXXXXXXXXXXXXNGYHPGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGL--------------CAACGRHAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLCGGRDPQAALAMAKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
HPGPIDNS LVL+AG PGTI G GRRLR+RLVRGYHFVLVPQEAW ALHAWYGGGP LPR LVP++DS SG VV+EPQL+PEFS LDPVLR+ A +SS + N ++ +P E XXXXXXXX +G G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX CAACG + +KC C K HRV YCS +CQ+AHWR+HKK CGG+ A L++AKRGKAGL NLGNTCFLNSAVQCLSHVQPLT+H+L+NAF+ D+N +NPLG
Sbjct: 662 HPGPIDNSELVLDAGTPGTIPGTGRRLRLRLVRGYHFVLVPQEAWIALHAWYGGGPALPRALVPIRDSDSGRVVFEPQLFPEFSRLDPVLRS------ATVCSSSVVGDNDAPSNEDLANDKPTAXXXXXXXXXXXXXXXXEKSPLVAAAAXXXXXXXXEDTGGSVDGKGVGNGVGGESTEPPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQVDRAGGRGXXXXXXXXDKKTKKNEDAWYPCAACGAPSNKKCTSCSKTQHRVSYCSPACQKAHWRFHKKFCGGKGSGAGLSLAKRGKAGLDNLGNTCFLNSAVQCLSHVQPLTRHVLSNAFQEDLNLTNPLG 1003
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: A0A7S2STD1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STD1_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.860e-22 Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 1492 LCAACGRHAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLC--GGRDPQAALA-MAKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
CAAC R A+ KC RC+ V YC++ CQ +HW++HKK C G DP + +RG GL+NLGN+C++NSA+ CLSHV P+T+H L+ F+ ++N NP+G
Sbjct: 319 FCAACNRTAQSKCKRCNF----VVYCNKHCQASHWKFHKKFCLAGVEDPSPKMTPQTRRGFVGLVNLGNSCYMNSAIACLSHVYPITRHFLSGVFKEELNLDNPMG 420
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: T0RKH9_SAPDV (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RKH9_SAPDV) HSP 1 Score: 111 bits (278), Expect = 6.830e-22 Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 1
Query: 1495 CAACGRHAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLC----GGRDPQAALAMAKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
C CGR ++ +CA C +YCS+ CQ AHW+YHK +C GG A +RG+ GL NLGNTCF+N+A+QCLSH LT H LTN ++ D+N N LG
Sbjct: 236 CTVCGRPSRNRCAVCKT----PYYCSKQCQSAHWKYHKSVCRVIKGGGSISAVETHGRRGQTGLRNLGNTCFMNAALQCLSHTPVLTAHFLTNLYQADLNTDNVLG 337
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: A0A7S2A1U5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A1U5_9STRA) HSP 1 Score: 108 bits (269), Expect = 8.890e-21 Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 1489 GLCAACGR-HAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLCGGRDP--------QAALAMAKR----------GKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
G+CA+C R AK +C+RC V YC + CQ +HW YH+ +C + + M ++ G+ GL NLGNTCF+NSA+QCLSH PLT+H LTN FR D+N SNPLG
Sbjct: 174 GVCASCRRIGAKSRCSRCLT----VQYCGRDCQASHWPYHRTICNSAKKKRTSSSKTETEMMMQEQLIISWKDVNWGRVGLNNLGNTCFMNSAIQCLSHAAPLTRHFLTNRFRNDLNSSNPLG 292
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: M4BGP8_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGP8_HYAAE) HSP 1 Score: 106 bits (265), Expect = 2.620e-20 Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query: 1492 LCAACGRH--AKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLC-----GGRDPQAA---LAMAKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
+C AC + A ++C CH ++YC +CQ +HW+YHK LC G A L + +RGK GL NLGNTCF+NSA+QCLSHV+ LT++ L+N ++ D+N NPLG
Sbjct: 188 ICGACRKTTGALKRCGSCHM----IWYCGLNCQTSHWKYHKTLCRSKLSAGEKADGAIQKLQVERRGKMGLRNLGNTCFMNSALQCLSHVELLTRYFLSNKYKKDLNHDNPLG 296
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: A0A7S2S126_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S126_9STRA) HSP 1 Score: 101 bits (251), Expect = 3.980e-20 Identity = 52/122 (42.62%), Postives = 66/122 (54.10%), Query Frame = 1
Query: 1483 SGGLCAACGR-HAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLCGGRDPQAALAM---------------AKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
+G C ACG A +C C V+YC ++CQ +HW YHK +C Q AK G+ GL NLGNTCF+NSA+QCLSH PLT+H + AF+ D+N NPLG
Sbjct: 23 TGRSCGACGSTKAPSRCTTCMA----VYYCGRTCQASHWPYHKNICNVLQKQIQTMSPATIQHQHKIIHRESAKHGRTGLNNLGNTCFMNSALQCLSHAIPLTRHFINCAFQHDLNTDNPLG 140
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: A0A067C7Q0_SAPPC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C7Q0_SAPPC) HSP 1 Score: 105 bits (263), Expect = 4.950e-20 Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 1495 CAACGRHAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLCGGRDPQAAL---------AMAKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
C CGR ++ +C C FYCS+ CQ AHW+YHK +C AA+ +RG+ GL NLGNTCF+N+A+QCLSH LT H LTN ++ D+N N LG
Sbjct: 235 CTVCGRPSRNRCGPCKT----PFYCSKQCQSAHWKYHKSVCRMLVAHAAVDGGSVSVVEVHGRRGQTGLRNLGNTCFMNAALQCLSHTPVLTAHFLTNLYQSDLNTDNVLG 341
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: A0A1V9ZPK2_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPK2_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.200e-19 Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1495 CAACGRHAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLC----GGRDPQAALAMAKRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
C C R + +C C NS YCS++CQ +HW+YH+ C G+ A + +RG+ GL NLGNTCF+NSA+QCLSH LT H ++N ++ D+N N LG
Sbjct: 123 CVVCSRMSINRCGNCKLNS----YCSRTCQTSHWKYHRDTCRAIISGKKVTAMDLVGRRGQTGLRNLGNTCFMNSALQCLSHTPVLTNHFISNRYQDDLNTDNVLG 224
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Match: A0A1V9YKT0_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKT0_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.550e-19 Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query: 1495 CAACGRHAKEKCARCHKNSHRVFYCSQSCQEAHWRYHKKLCGGRDPQAALAMA----KRGKAGLINLGNTCFLNSAVQCLSHVQPLTQHILTNAFRGDINDSNPLG 1800
C C R ++ +C C NS YCS+ CQ AHW++HK +C + +M +RG+ GL NLGNTCF+N+A+QCLSH LT H L+N ++ D+N N LG
Sbjct: 230 CVVCARPSRSRCGLCKTNS----YCSKGCQSAHWKFHKTVCKTLQNNGSASMVEIHGRRGQTGLRNLGNTCFMNAALQCLSHTPVLTTHFLSNKYQEDLNKDNVLG 331 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5671.13208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5671.13208.1 >prot_H-paniculata_contig5671.13208.1 ID=prot_H-paniculata_contig5671.13208.1|Name=mRNA_H-paniculata_contig5671.13208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=600bp KWWLRWQRYTGCDKDAVASAASVSAAAASADGGVAVRSNNYSDCDSGDDGback to top mRNA from alignment at H-paniculata_contig5671:4741..13236+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5671.13208.1 ID=mRNA_H-paniculata_contig5671.13208.1|Name=mRNA_H-paniculata_contig5671.13208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8496bp|location=Sequence derived from alignment at H-paniculata_contig5671:4741..13236+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5671:4741..13236+ >mRNA_H-paniculata_contig5671.13208.1 ID=mRNA_H-paniculata_contig5671.13208.1|Name=mRNA_H-paniculata_contig5671.13208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3600bp|location=Sequence derived from alignment at H-paniculata_contig5671:4741..13236+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |