prot_H-paniculata_contig5660.13195.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5660.13195.1
Unique Nameprot_H-paniculata_contig5660.13195.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length265
Homology
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.210e-64
Identity = 123/176 (69.89%), Postives = 133/176 (75.57%), Query Frame = 0
Query:    5 RDRGRGSYGREDSRDRNDRRG----ASPGKVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKERDEPPRRGYGRSXXXXXXXGYGGYAARRXXXXXXXXXXXXXXXXSPPRRRDRSDS 176
            RDRGRG YGR+DSR R+        + PGKVSLLVRNLTFRTR +DVKRIF+DFGD+RDVYLPLDFGTQKPRGFAFVEFY+PG+A  A+DRLDGYNLDGRNISVLYAQEKRKRP+EMV KER E  R  YGR   XXXX GY GYAARR                SPPRRR RS S
Sbjct:    3 RDRGRGGYGRDDSRGRDXXXXXXXXSGPGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEG-RGDYGRGRSXXXXRGYSGYAARRSR--------------SPPRRRSRSYS 163          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.710e-32
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 0
Query:   28 PGKVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKE 121
            P  VSLLVRN+++RTR ED++ IFS +GDIRDVYLP+D+ +++PRGFAFVEFY+  +A  AKD LD Y LD R I+V++AQ++RKRPEEM   E
Sbjct:   25 PDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSKEPRGFAFVEFYDGRDAADAKDALDRYALDNRQIAVVFAQQRRKRPEEMAHTE 118          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.300e-27
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 0
Query:    6 DRGRGSYGREDSRDRNDR--------------------RGASPGKVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEM 117
            DRGR    R +SRDRNDR                    R       SLLVRNL++R R ++++RIF  +GDIRDVY+P D+ TQ+PRGFAFVEFY+  +A  A D LD Y +DGR I+V++A+++RK  +EM
Sbjct:    3 DRGRA---RSNSRDRNDRGDSXXXXXXXRSDRDDKVSSRDGPEATTSLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQRPRGFAFVEFYDRRDAADALDHLDRYEMDGREIAVVFAKDRRKTADEM 131          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: A0A7S2BL32_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL32_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.670e-27
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 0
Query:   22 DRRGASPGKVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKERD 123
            DR     G+VSLLVRN+++  R ED+   F ++G+IRDVY+P+D+ +QKPRGFAFVEFY P +A  A+ +LD  ++ GR I V++AQ +RKRPEEM   +R+
Sbjct:   18 DRPAGEDGQVSLLVRNISYDCRKEDLADRFREYGEIRDVYVPVDYYSQKPRGFAFVEFYNPDDAEEARVKLDKTDVHGREIQVMFAQNRRKRPEEMSTMDRN 119          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: A0A6A4DL65_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DL65_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.990e-26
Identity = 53/104 (50.96%), Postives = 78/104 (75.00%), Query Frame = 0
Query:   29 GKVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKERDEPPRRGYGR 132
            G +SLLVRN++ R RPED+++ F  +G++RDVY+P DF T++P+GFAFVEF    EA  A+  LDG  +DGR+I V++AQE+RK  ++M  +ER++  +RG GR
Sbjct:    5 GGISLLVRNISRRLRPEDIRKEFERYGEVRDVYIPKDFYTKEPKGFAFVEFRSEREADDARRNLDGVRIDGRDIRVVFAQERRKSTDQM--REREKTEKRGGGR 106          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: W2JZ98_PHYPR (RRM domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2JZ98_PHYPR)

HSP 1 Score: 109 bits (273), Expect = 2.230e-25
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 0
Query:   29 GKVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKERDE 124
            G +SLLVRN++ R RPED+++ F  +G++RDVY+P DF T++P+GFAFVEF    EA  A+  LDG  +DGR+I V++AQE+RK  E+M  +ER E
Sbjct:    5 GGISLLVRNISRRLRPEDIRKEFERYGEVRDVYIPKDFYTKEPKGFAFVEFRSEREAEDARRNLDGVRIDGRDIRVVFAQERRKSTEQMRERERTE 100          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: A0A3F2S3V6_9STRA (RRM domain-containing protein (Fragment) n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3V6_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.420e-25
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 0
Query:   31 VSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKERDEPPRRG 129
            +SLLVRN++ R RPED+++ F  +G++RDVY+P D+ T++P+GFAFVEF    EA  A+  LDG  +DGR+I V++AQE+RK  ++M  +E+ E PR G
Sbjct:   20 ISLLVRNISRRLRPEDIRKEFERYGEVRDVYIPKDYYTKEPKGFAFVEFKSDREAEDARRNLDGVRIDGRDIRVVFAQERRKSTDQMREREKTEKPRGG 118          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: A0A5A7R078_STRAF (SC35-like splicing factor 33 n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R078_STRAF)

HSP 1 Score: 108 bits (271), Expect = 3.990e-25
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0
Query:    7 RGRGSYGREDSRDRNDRRGASPGKVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKER 122
            RG G  GR   R     RG +P   SLLVRNL    RPED+KR FS FG ++D+YLP D+ T +PRGF FV++ EP +A  AK  +DG    GR ++V++A+E RK+P EM  +ER
Sbjct:   12 RGYGRRGRSPPRGGRHGRGDAP--TSLLVRNLRHDCRPEDLKRPFSQFGPVKDIYLPRDYYTNEPRGFGFVQYVEPADAADAKYHMDGQIFQGREVTVVFAEENRKKPTEMRARER 125          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: M4D602_BRARP (RRM domain-containing protein n=12 Tax=Brassica TaxID=3705 RepID=M4D602_BRARP)

HSP 1 Score: 110 bits (275), Expect = 6.320e-25
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 0
Query:    9 RGSYGREDSRDRNDRRGASPG-------KVSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKER 122
            RGSYGR D R  + R G   G         SLLVRNL    R ED++R F  FG ++D+Y+P D+ T  PRGF FV+F +P +A  AK ++DGY+L GR ++V++A+E RK+P EM  +ER
Sbjct:   12 RGSYGRRDRRSPSPRGGGRYGGARSLDLPTSLLVRNLRHDCRQEDLRRSFEQFGPLKDIYMPRDYYTGDPRGFGFVQFVDPADAAEAKYQMDGYHLLGRELTVVFAEENRKKPTEMRARER 132          
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Match: A0A8K1CUS2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUS2_PYTOL)

HSP 1 Score: 108 bits (270), Expect = 6.870e-25
Identity = 54/103 (52.43%), Postives = 75/103 (72.82%), Query Frame = 0
Query:   31 VSLLVRNLTFRTRPEDVKRIFSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGRNISVLYAQEKRKRPEEMVRKERDEPPRRGYGRS 133
            +SLLVRNL+ R RP+D+++ F  FGD+RDVY+P DF T++ +GFAFVEF    +A  A+  LDG  LDGR I V++AQEKRK  ++M  ++R+  P+R  GRS
Sbjct:    7 ISLLVRNLSRRMRPDDLRKEFEKFGDVRDVYIPKDFYTREAKGFAFVEFKTERDADEARHNLDGARLDGREIRVVFAQEKRKSSDQM--RDRERAPKRRGGRS 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5660.13195.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRC3_ECTSI3.210e-6469.89RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2V1C3_9STRA1.710e-3261.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3HCI8_9STRA1.300e-2746.97Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2BL32_9STRA6.670e-2751.96Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A4DL65_9STRA5.990e-2650.96RRM domain-containing protein n=2 Tax=Phytophthora... [more]
W2JZ98_PHYPR2.230e-2553.13RRM domain-containing protein n=10 Tax=Phytophthor... [more]
A0A3F2S3V6_9STRA3.420e-2550.51RRM domain-containing protein (Fragment) n=4 Tax=P... [more]
A0A5A7R078_STRAF3.990e-2549.14SC35-like splicing factor 33 n=1 Tax=Striga asiati... [more]
M4D602_BRARP6.320e-2547.11RRM domain-containing protein n=12 Tax=Brassica Ta... [more]
A0A8K1CUS2_PYTOL6.870e-2552.43Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 32..105
e-value: 1.0E-20
score: 84.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 33..102
e-value: 1.6E-18
score: 66.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 31..109
score: 18.052
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..123
e-value: 1.8E-27
score: 98.3
NoneNo IPR availablePANTHERPTHR23147:SF149SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30coord: 22..179
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 22..179
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 19..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5660contigH-paniculata_contig5660:6801..12055 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5660.13195.1mRNA_H-paniculata_contig5660.13195.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5660 6657..12963 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5660.13195.1 ID=prot_H-paniculata_contig5660.13195.1|Name=mRNA_H-paniculata_contig5660.13195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MSRDRDRGRGSYGREDSRDRNDRRGASPGKVSLLVRNLTFRTRPEDVKRI
FSDFGDIRDVYLPLDFGTQKPRGFAFVEFYEPGEAGRAKDRLDGYNLDGR
NISVLYAQEKRKRPEEMVRKERDEPPRRGYGRSRSRSRSRGYGGYAARRE
SRSPPRRRYSRSYSRSPPRRRDRSDSRDRGRGRRSRSRSRSRSRGGGGGR
GYSRSPSPRRDRDRSPSRSPPRGGYRGRDDDGDHGSANGNGAHHHDDDRD
GGHEDDGGRGDPGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf