mRNA_H-paniculata_contig566.13193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig566.13193.1
Unique NamemRNA_H-paniculata_contig566.13193.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 7.280e-57
Identity = 120/303 (39.60%), Postives = 173/303 (57.10%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAKDH-----------LIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARK 870
            +FR I +G V + +VVHVDD  +  ++            ++ +K+LG+  +Y GC   R+  A  LK+ Q  Y + +  +FG+E    IP       L +G +    ++ EE+  +  RE + +LMW AT TRPDIA AVRAVAR+C +    H +A + I+ YV+RT + GIT+  G   GLSME + D+D+ +    RRSVSGG+VM   G ISW SR  +     T+EAEY++L+  +K V+FLRQV   M P      + VFED++GA +L  N  S+   KHIDV HH +R     RK
Sbjct:    6 VFRLIEEGRVVVTLVVHVDDIFSIGEEERYDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP-------LPVGMKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRK 301          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.100e-56
Identity = 119/309 (38.51%), Postives = 178/309 (57.61%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAKDH-----------LIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR I +G V + +VVHVDD  +  ++            ++ +K+LG+  +Y GC   R+  A  LK+ Q  Y + +  +FG+E    IP       L +G +    ++ EE+  +  RE + +LMW AT TRPDIA AVRAVAR+C +    H +A + I+ YV+RT + GIT+  G   GLSME + D+D+ +    RRSVSGG+VM   G ISW SR  +     T+EAEY++L+  +K V+FLRQV   M P      + VFED++GA +L  N  S+  +KHIDV HH +R     +++ + +V
Sbjct:  107 VFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP-------LPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHV 408          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 3.510e-55
Identity = 119/309 (38.51%), Postives = 178/309 (57.61%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAKDH-----------LIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR I +G V + +VVHVDD  +  ++            ++ +K+LG+  +Y GC   R+  A  LK+ Q  Y + +  +FG+E    IP       L +G +    ++ EE+  +  RE + +LMW AT TRPDIA AVRAVAR+C +    H +A + I+ YV+RT + GIT+  G   GLSME + D+D+ +    RRSVSGG+VM   G ISW SR  +     T+EAEY++L+  +K V+FLRQV   M P      + VFED++GA +L  N  S+  +KHIDV HH +R     +++ + +V
Sbjct:  281 VFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP-------LPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHV 582          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 4.060e-55
Identity = 116/309 (37.54%), Postives = 171/309 (55.34%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAK-----------DHLIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR I DG V +++VVHVDD     +           +  + +K+LG   +Y GC   RN++   L + Q  +   +  ++G+    S+P  SG        +       E  T+F  RE V +LMW AT TRPDIA AVRAVAR+C +  L H  A ++I+ Y  RT  +GI++  G   G S++ Y D+DF +    RRSVSGG+V    GA+SW SR  +     T+EAEY+AL   VK ++FLRQ+   M P +    + VFED++GA +L  N  S+  +KHIDV HH +R   + +++ V +V
Sbjct:  131 VFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDAD-------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 432          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.570e-53
Identity = 119/309 (38.51%), Postives = 178/309 (57.61%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAKDH-----------LIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR I +G V + +VVHVDD  +  ++            ++ +K+LG+  +Y GC   R+  A  LK+ Q  Y + +  +FG+E    IP       L +G +    ++ EE+  +  RE + +LMW AT TRPDIA AVRAVAR+C +    H +A + I+ YV+RT + GIT+  G   GLSME + D+D+ +    RRSVSGG+VM   G ISW SR  +     T+EAEY++L+  +K V+FLRQV   M P      + VFED++GA +L  N  S+  +KHIDV HH +R     +++ + +V
Sbjct:  802 VFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIP-------LPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHV 1103          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 9.690e-53
Identity = 109/309 (35.28%), Postives = 174/309 (56.31%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAK-----------DHLIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR + +G V M++VVHVDD     +           + ++ +K+LG   +Y  C   R+ +   L++ Q  + + +  ++G+E   S+P       L +  +    +E E       RE V +LMW AT TRPDIA AVRAVAR+C +  + H KA + I+ YV RT   GIT+  G   G+SM+ + D+D+ +    RRSVSGG+VM   G ++W SR  +     T+EAEY+A++  +K V+FLRQV   M P      + VFED++GA ++ +N  ++  +KHIDV HH +R   + +++ + +V
Sbjct:   45 VFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVP-------LPVSVKLTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHV 346          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5J4N2_9PHAE (Integrase catalytic domain-containing protein n=18 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4N2_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.880e-52
Identity = 116/309 (37.54%), Postives = 171/309 (55.34%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAK-----------DHLIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR I DG V +++VVHVDD     +           +  + +K+LG   +Y GC   RN++   L + Q  +   +  ++G+    S+P  SG        +       E  T+F  RE V +LMW AT TRPDIA AVRAVAR+C +  L H  A ++I+ Y  RT  +GI++  G   G S++ Y D+DF +    RRSVSGG+V    GA+SW SR  +     T+EAEY+AL   VK ++FLRQ+   M P +    + VFED++GA +L  N  S+  +KHIDV HH +R   + +++ V +V
Sbjct: 1467 VFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDAD-------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 1768          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5L867_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.880e-52
Identity = 116/309 (37.54%), Postives = 171/309 (55.34%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAK-----------DHLIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR I DG V +++VVHVDD     +           +  + +K+LG   +Y GC   RN++   L + Q  +   +  ++G+    S+P  SG        +       E  T+F  RE V +LMW AT TRPDIA AVRAVAR+C +  L H  A ++I+ Y  RT  +GI++  G   G S++ Y D+DF +    RRSVSGG+V    GA+SW SR  +     T+EAEY+AL   VK ++FLRQ+   M P +    + VFED++GA +L  N  S+  +KHIDV HH +R   + +++ V +V
Sbjct: 1253 VFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDAD-------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 1554          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 3.020e-52
Identity = 116/309 (37.54%), Postives = 171/309 (55.34%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAK-----------DHLIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR I DG V +++VVHVDD     +           +  + +K+LG   +Y GC   RN++   L + Q  +   +  ++G+    S+P  SG        +       E  T+F  RE V +LMW AT TRPDIA AVRAVAR+C +  L H  A ++I+ Y  RT  +GI++  G   G S++ Y D+DF +    RRSVSGG+V    GA+SW SR  +     T+EAEY+AL   VK ++FLRQ+   M P +    + VFED++GA +L  N  S+  +KHIDV HH +R   + +++ V +V
Sbjct: 1321 VFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDAD-------EVATEFPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHV 1622          
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 5.870e-52
Identity = 109/309 (35.28%), Postives = 174/309 (56.31%), Query Frame = 1
Query:    1 MFRKIVDGEVEMVVVVHVDDTLTHAK-----------DHLIELKDLGNADFYMGCHVSRNRKACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKEEMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEIVQYVLRTMEWGITYG-GQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAKGAISWHSRMPEKAA-GTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVVDVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV 888
            +FR + +G V M++VVHVDD     +           + ++ +K+LG   +Y  C   R+ +   L++ Q  + + +  ++G+E   S+P       L +  +    +E E       RE V +LMW AT TRPDIA AVRAVAR+C +  + H KA + I+ YV RT   GIT+  G   G+SM+ + D+D+ +    RRSVSGG+VM   G ++W SR  +     T+EAEY+A++  +K V+FLRQV   M P      + VFED++GA ++ +N  ++  +KHIDV HH +R   + +++ + +V
Sbjct:  107 VFRLMEEGRVIMIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVP-------LPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHV 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig566.13193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR24_9PHAE7.280e-5739.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.100e-5638.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE3.510e-5538.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE4.060e-5537.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE1.570e-5338.51Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5L4G9_9PHAE9.690e-5335.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J4N2_9PHAE2.880e-5237.54Integrase catalytic domain-containing protein n=18... [more]
A0A6H5L867_9PHAE2.880e-5237.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBD4_9PHAE3.020e-5237.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JEF2_9PHAE5.870e-5235.28Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig566contigH-paniculata_contig566:34144..35034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue1e-37
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size891
Cds size891
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930604.971113-CDS-H-paniculata_contig566:34143..350341622930604.971113-CDS-H-paniculata_contig566:34143..35034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig566 34144..35034 +
1691481368.7544649-CDS-H-paniculata_contig566:34143..350341691481368.7544649-CDS-H-paniculata_contig566:34143..35034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig566 34144..35034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig566.13193.1prot_H-paniculata_contig566.13193.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig566 34144..35034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig566.13193.1

>prot_H-paniculata_contig566.13193.1 ID=prot_H-paniculata_contig566.13193.1|Name=mRNA_H-paniculata_contig566.13193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MFRKIVDGEVEMVVVVHVDDTLTHAKDHLIELKDLGNADFYMGCHVSRNR
KACELKLDQYMYVQSMTEKFGLEKTSSIPAMSGAPALSIGCEPKTPEEKE
EMTKFSCREAVEALMWTATMTRPDIACAVRAVARFCENSGLAHKKAVIEI
VQYVLRTMEWGITYGGQGCGLSMEAYTDSDFGACLDTRRSVSGGVVMMAK
GAISWHSRMPEKAAGTSEAEYIALSQSVKGVMFLRQVQELMEPSIITGVV
DVFEDHEGATKLTNNKHSSRRTKHIDVEHHMVRNASDARKVRVGYV*
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mRNA from alignment at H-paniculata_contig566:34144..35034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig566.13193.1 ID=mRNA_H-paniculata_contig566.13193.1|Name=mRNA_H-paniculata_contig566.13193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=891bp|location=Sequence derived from alignment at H-paniculata_contig566:34144..35034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAGGAAGATCGTCGACGGAGAGGTGGAAATGGTGGTCGTCGTGCA CGTGGACGACACGCTTACCCACGCAAAGGACCACTTGATCGAGCTGAAGG ACTTGGGTAACGCCGACTTCTACATGGGTTGTCACGTTTCCCGAAACAGA AAGGCGTGCGAGCTGAAACTCGATCAATACATGTACGTGCAGTCGATGAC GGAAAAATTCGGGCTCGAGAAGACGAGCAGCATACCAGCCATGTCAGGAG CACCAGCACTATCAATAGGATGCGAACCGAAGACTCCAGAGGAGAAGGAG GAGATGACGAAATTCTCATGTCGAGAGGCAGTGGAGGCGCTAATGTGGAC AGCGACGATGACGCGACCGGATATAGCGTGCGCAGTACGTGCCGTTGCAA GGTTCTGCGAAAACTCTGGGCTTGCACACAAGAAGGCGGTGATTGAGATA GTGCAGTATGTATTACGCACGATGGAATGGGGCATCACATATGGTGGACA AGGCTGCGGGCTTAGCATGGAAGCTTACACAGACTCGGATTTCGGAGCCT GCTTGGACACTAGACGCTCGGTATCTGGTGGAGTCGTGATGATGGCGAAG GGGGCGATAAGCTGGCACTCTAGAATGCCGGAGAAAGCAGCGGGTACTTC GGAAGCAGAGTACATTGCACTGTCACAATCAGTAAAGGGTGTGATGTTTT TAAGGCAGGTACAAGAGTTAATGGAGCCAAGTATAATTACCGGAGTGGTG GACGTGTTCGAGGATCACGAGGGGGCGACCAAGCTAACGAACAACAAGCA CTCTAGCCGTAGGACAAAGCACATAGATGTTGAACACCATATGGTGCGGA ACGCGTCGGATGCCAGAAAGGTTAGGGTAGGCTACGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig566:34144..35034+

>mRNA_H-paniculata_contig566.13193.1 ID=mRNA_H-paniculata_contig566.13193.1|Name=mRNA_H-paniculata_contig566.13193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig566:34144..35034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAGGAAGATCGTCGACGGAGAGGTGGAAATGGTGGTCGTCGTGCA
CGTGGACGACACGCTTACCCACGCAAAGGACCACTTGATCGAGCTGAAGG
ACTTGGGTAACGCCGACTTCTACATGGGTTGTCACGTTTCCCGAAACAGA
AAGGCGTGCGAGCTGAAACTCGATCAATACATGTACGTGCAGTCGATGAC
GGAAAAATTCGGGCTCGAGAAGACGAGCAGCATACCAGCCATGTCAGGAG
CACCAGCACTATCAATAGGATGCGAACCGAAGACTCCAGAGGAGAAGGAG
GAGATGACGAAATTCTCATGTCGAGAGGCAGTGGAGGCGCTAATGTGGAC
AGCGACGATGACGCGACCGGATATAGCGTGCGCAGTACGTGCCGTTGCAA
GGTTCTGCGAAAACTCTGGGCTTGCACACAAGAAGGCGGTGATTGAGATA
GTGCAGTATGTATTACGCACGATGGAATGGGGCATCACATATGGTGGACA
AGGCTGCGGGCTTAGCATGGAAGCTTACACAGACTCGGATTTCGGAGCCT
GCTTGGACACTAGACGCTCGGTATCTGGTGGAGTCGTGATGATGGCGAAG
GGGGCGATAAGCTGGCACTCTAGAATGCCGGAGAAAGCAGCGGGTACTTC
GGAAGCAGAGTACATTGCACTGTCACAATCAGTAAAGGGTGTGATGTTTT
TAAGGCAGGTACAAGAGTTAATGGAGCCAAGTATAATTACCGGAGTGGTG
GACGTGTTCGAGGATCACGAGGGGGCGACCAAGCTAACGAACAACAAGCA
CTCTAGCCGTAGGACAAAGCACATAGATGTTGAACACCATATGGTGCGGA
ACGCGTCGGATGCCAGAAAGGTTAGGGTAGGCTACGTGTAGATGTTCAGG
AAGATCGTCGACGGAGAGGTGGAAATGGTGGTCGTCGTGCACGTGGACGA
CACGCTTACCCACGCAAAGGACCACTTGATCGAGCTGAAGGACTTGGGTA
ACGCCGACTTCTACATGGGTTGTCACGTTTCCCGAAACAGAAAGGCGTGC
GAGCTGAAACTCGATCAATACATGTACGTGCAGTCGATGACGGAAAAATT
CGGGCTCGAGAAGACGAGCAGCATACCAGCCATGTCAGGAGCACCAGCAC
TATCAATAGGATGCGAACCGAAGACTCCAGAGGAGAAGGAGGAGATGACG
AAATTCTCATGTCGAGAGGCAGTGGAGGCGCTAATGTGGACAGCGACGAT
GACGCGACCGGATATAGCGTGCGCAGTACGTGCCGTTGCAAGGTTCTGCG
AAAACTCTGGGCTTGCACACAAGAAGGCGGTGATTGAGATAGTGCAGTAT
GTATTACGCACGATGGAATGGGGCATCACATATGGTGGACAAGGCTGCGG
GCTTAGCATGGAAGCTTACACAGACTCGGATTTCGGAGCCTGCTTGGACA
CTAGACGCTCGGTATCTGGTGGAGTCGTGATGATGGCGAAGGGGGCGATA
AGCTGGCACTCTAGAATGCCGGAGAAAGCAGCGGGTACTTCGGAAGCAGA
GTACATTGCACTGTCACAATCAGTAAAGGGTGTGATGTTTTTAAGGCAGG
TACAAGAGTTAATGGAGCCAAGTATAATTACCGGAGTGGTGGACGTGTTC
GAGGATCACGAGGGGGCGACCAAGCTAACGAACAACAAGCACTCTAGCCG
TAGGACAAAGCACATAGATGTTGAACACCATATGGTGCGGAACGCGTCGG
ATGCCAGAAAGGTTAGGGTAGGCTACGTGTAG
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