mRNA_H-paniculata_contig56578.13186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56578.13186.1
Unique NamemRNA_H-paniculata_contig56578.13186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A8F0JX13_9PHAE (Ribosomal protein S19 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JX13_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.010e-59
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKKK 282
            MARSFRKGPFIAYHLLEKIE+MNKTGKKNLIKTWSRSSTI+PSMIGHTIAVYNGKQH PLYISDQIIGHKLGEF+PTRNFRSHIKSSDRRAKKK
Sbjct:    1 MARSFRKGPFIAYHLLEKIEQMNKTGKKNLIKTWSRSSTIIPSMIGHTIAVYNGKQHVPLYISDQIIGHKLGEFVPTRNFRSHIKSSDRRAKKK 94
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: D1GJS8_FUCVE (30S ribosomal protein S19, chloroplastic n=16 Tax=Fucales TaxID=3009 RepID=D1GJS8_FUCVE)

HSP 1 Score: 172 bits (435), Expect = 4.390e-54
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKKK 282
            MARSFRKGPFIAYHLL+KIEKMNKT KKN+IKTWSRSS I+PSMIGHTIAVYNGKQH PL+IS+QIIGHKLGEF PTRNFRSHIKSSDRR K+K
Sbjct:    1 MARSFRKGPFIAYHLLQKIEKMNKTEKKNIIKTWSRSSMIIPSMIGHTIAVYNGKQHVPLFISEQIIGHKLGEFTPTRNFRSHIKSSDRRLKRK 94
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A7T8G4D6_SCYLO (30S ribosomal protein S19, chloroplastic n=35 Tax=Phaeophyceae TaxID=2870 RepID=A0A7T8G4D6_SCYLO)

HSP 1 Score: 169 bits (427), Expect = 1.130e-52
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKKK 282
            M RSFRKGPFIAYHLL+KIE+MN+TGKK  IKTWSRSS I+PSMIGHTI+VYNGK+H PL+ISDQIIGHKLGEFIPTRNFRSHIKSSDRR KKK
Sbjct:   15 MTRSFRKGPFIAYHLLQKIEEMNETGKKKSIKTWSRSSMIIPSMIGHTISVYNGKKHIPLFISDQIIGHKLGEFIPTRNFRSHIKSSDRRLKKK 108
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A2I4Q2Y8_9PHAE (30S ribosomal protein S19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2Y8_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 7.470e-51
Identity = 75/93 (80.65%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKK 279
            MARS+RKGPF+AYHLL+KI+++NKT KK ++KTWSRSSTI+P+MIGHTIA+YNGK+HFPL+IS+QIIGHKLGEFIPT NFRSHIKSSDRR KK
Sbjct:    1 MARSYRKGPFVAYHLLQKIDELNKTKKKVVVKTWSRSSTIIPAMIGHTIAIYNGKKHFPLFISEQIIGHKLGEFIPTHNFRSHIKSSDRRLKK 93
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A7S6U9Y0_9STRA (30S ribosomal protein S19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Y0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 6.110e-47
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKK 279
            M RS +KGPF+AYHLL+KIE+MN TG+K  IKTWSRSSTI+P MIGHTIAVYNGK+H PL++SDQIIGHKLGEFIPTRNF+SH+KS DR+ K+
Sbjct:    1 MGRSLKKGPFVAYHLLQKIEEMNTTGRKETIKTWSRSSTIIPDMIGHTIAVYNGKRHIPLFVSDQIIGHKLGEFIPTRNFKSHVKS-DRKTKR 92
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A516ZAJ1_9STRA (30S ribosomal protein S19, chloroplastic n=1 Tax=Pseudopedinella elastica TaxID=35684 RepID=A0A516ZAJ1_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.540e-46
Identity = 70/93 (75.27%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKK 279
            M RS RKGPF+AYHLL+KI +MN+TGKK++IKTWSR+STI+PSM+GHTIAVYNGKQH P++ISDQI+GHKLGEF PTR FRSHIKS D++A++
Sbjct:    1 MGRSLRKGPFVAYHLLKKINEMNETGKKSVIKTWSRASTILPSMVGHTIAVYNGKQHVPIFISDQIVGHKLGEFAPTRTFRSHIKS-DKKARR 92
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A8E6D5Y0_9PHAE (30S ribosomal protein S19, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D5Y0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.460e-44
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMN---KTGKKNL--IKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKKK 282
            M RS RKGPF+AYHLL+KIEK N   + GKKN   I+TWSRSS I+PSMIGHTIAVYNG++H PL+ISDQIIG+KLGEF+PTRNF SH+KSSDRR KKK
Sbjct:    1 MTRSDRKGPFVAYHLLQKIEKANNEGQKGKKNATTIRTWSRSSMIIPSMIGHTIAVYNGRKHIPLFISDQIIGYKLGEFVPTRNFTSHVKSSDRRTKKK 99
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: B2XTF1_HETAK (30S ribosomal protein S19, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTF1_HETAK)

HSP 1 Score: 147 bits (372), Expect = 1.680e-44
Identity = 66/93 (70.97%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKK 279
            M+RS +KGPF+AYHLL+K++KMN+ GKK +I TWSRSSTI+P M+GHTIAVYNGKQH P++I++Q+IGHKLGEF+PTR FRSHIKS DR++K+
Sbjct:    1 MSRSLKKGPFVAYHLLKKVQKMNELGKKEIITTWSRSSTIIPPMLGHTIAVYNGKQHVPVFINEQVIGHKLGEFVPTRTFRSHIKS-DRKSKR 92
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A514CPM4_9STRA (30S ribosomal protein S19, chloroplastic n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A514CPM4_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.830e-44
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDR 267
            M RS RKGPF+AYHLL+KIE MN+  +K +IKTWSRSSTI PSM+GHTIAVYNG+QH P++ISDQI+GHKLGEF PTR FRSHIKS  R
Sbjct:    1 MGRSIRKGPFVAYHLLKKIEVMNEASQKQVIKTWSRSSTITPSMVGHTIAVYNGRQHVPIFISDQIVGHKLGEFAPTRTFRSHIKSDKR 89
[Close]
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Match: A0A516ZA23_9STRA (30S ribosomal protein S19, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA23_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.380e-43
Identity = 66/93 (70.97%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    1 MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIAVYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKK 279
            M RS RKGPF+AYHLL+K+ +MNKT KK +I+TWSR+STI+PSM+GHTIAVYNGKQH P++IS+ I+GHKLGEF PTR FRSH+KS D++AK+
Sbjct:    1 MGRSLRKGPFVAYHLLKKVNEMNKTDKKLVIQTWSRASTIIPSMVGHTIAVYNGKQHIPIFISETIVGHKLGEFAPTRTFRSHVKS-DKKAKR 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56578.13186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JX13_9PHAE2.010e-5995.74Ribosomal protein S19 n=1 Tax=Protohalopteris sp. ... [more]
D1GJS8_FUCVE4.390e-5488.3030S ribosomal protein S19, chloroplastic n=16 Tax=... [more]
A0A7T8G4D6_SCYLO1.130e-5286.1730S ribosomal protein S19, chloroplastic n=35 Tax=... [more]
A0A2I4Q2Y8_9PHAE7.470e-5180.6530S ribosomal protein S19, chloroplastic n=1 Tax=D... [more]
A0A7S6U9Y0_9STRA6.110e-4776.3430S ribosomal protein S19, chloroplastic n=1 Tax=S... [more]
A0A516ZAJ1_9STRA3.540e-4675.2730S ribosomal protein S19, chloroplastic n=1 Tax=P... [more]
A0A8E6D5Y0_9PHAE1.460e-4474.7530S ribosomal protein S19, chloroplastic n=1 Tax=I... [more]
B2XTF1_HETAK1.680e-4470.9730S ribosomal protein S19, chloroplastic n=2 Tax=H... [more]
A0A514CPM4_9STRA4.830e-4475.2830S ribosomal protein S19, chloroplastic n=1 Tax=D... [more]
A0A516ZA23_9STRA1.380e-4370.9730S ribosomal protein S19, chloroplastic n=1 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56578contigH-paniculata_contig56578:123..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.1
Seed ortholog evalue1e-39
Seed eggNOG ortholog2880.D1J748
Preferred namerps19
KEGG koko:K02886,ko:K02965
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031974,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070013,GO:0070925,GO:0071826,GO:0071840,GO:0098798,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0185@1,KOG0899@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930604.0457616-CDS-H-paniculata_contig56578:122..4071622930604.0457616-CDS-H-paniculata_contig56578:122..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56578 123..407 -
1691481368.2832353-CDS-H-paniculata_contig56578:122..4071691481368.2832353-CDS-H-paniculata_contig56578:122..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56578 123..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56578.13186.1prot_H-paniculata_contig56578.13186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56578 123..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56578.13186.1

>prot_H-paniculata_contig56578.13186.1 ID=prot_H-paniculata_contig56578.13186.1|Name=mRNA_H-paniculata_contig56578.13186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MARSFRKGPFIAYHLLEKIEKMNKTGKKNLIKTWSRSSTIVPSMIGHTIA
VYNGKQHFPLYISDQIIGHKLGEFIPTRNFRSHIKSSDRRAKKK*
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mRNA from alignment at H-paniculata_contig56578:123..407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56578.13186.1 ID=mRNA_H-paniculata_contig56578.13186.1|Name=mRNA_H-paniculata_contig56578.13186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at H-paniculata_contig56578:123..407- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGATCATTTCGTAAAGGTCCTTTTATAGCCTACCATCTGTTAGA
AAAAATTGAAAAAATGAATAAAACTGGGAAAAAAAATCTGATTAAAACTT
GGTCACGCTCATCAACAATTGTTCCCTCTATGATTGGGCATACTATAGCT
GTTTATAATGGGAAACAACATTTCCCTCTTTATATTTCAGATCAAATTAT
TGGACATAAGCTAGGTGAATTTATACCTACCAGAAATTTTCGTTCTCATA
TAAAAAGTAGTGACAGAAGAGCAAAAAAAAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig56578:123..407-

>mRNA_H-paniculata_contig56578.13186.1 ID=mRNA_H-paniculata_contig56578.13186.1|Name=mRNA_H-paniculata_contig56578.13186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig56578:123..407- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGATCATTTCGTAAAGGTCCTTTTATAGCCTACCATCTGTTAGA
AAAAATTGAAAAAATGAATAAAACTGGGAAAAAAAATCTGATTAAAACTT
GGTCACGCTCATCAACAATTGTTCCCTCTATGATTGGGCATACTATAGCT
GTTTATAATGGGAAACAACATTTCCCTCTTTATATTTCAGATCAAATTAT
TGGACATAAGCTAGGTGAATTTATACCTACCAGAAATTTTCGTTCTCATA
TAAAAAGTAGTGACAGAAGAGCAAAAAAAAAATAAATGGCAAGATCATTT
CGTAAAGGTCCTTTTATAGCCTACCATCTGTTAGAAAAAATTGAAAAAAT
GAATAAAACTGGGAAAAAAAATCTGATTAAAACTTGGTCACGCTCATCAA
CAATTGTTCCCTCTATGATTGGGCATACTATAGCTGTTTATAATGGGAAA
CAACATTTCCCTCTTTATATTTCAGATCAAATTATTGGACATAAGCTAGG
TGAATTTATACCTACCAGAAATTTTCGTTCTCATATAAAAAGTAGTGACA
GAAGAGCAAAAAAAAAATAA
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