mRNA_H-paniculata_contig56509.13181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA) HSP 1 Score: 60.5 bits (145), Expect = 2.760e-8 Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 145 KETVEGTVHFSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 342
++T++ F KTN G V K+K+RLVA G ++ +IDY E FAP +V+T+LA+A EDL+
Sbjct: 818 RKTIQCKWIFKSKTNSHGEVSKYKARLVAKGYSQRAEIDYSETFAPVVRYESVRTLLAIAADEDLE 883
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5K308_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K308_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.200e-7 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 2
Query: 5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
+D E +P DV SKY+ FWE A+KKE G HDKTGTFT V + EG+K + +++F K
Sbjct: 181 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIGGHDKTGTFTKVKELPEGRKAIGSKWVFSCK 241
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A085N6C0_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N6C0_9BILA) HSP 1 Score: 58.2 bits (139), Expect = 1.830e-7 Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 145 KETVEGTVHFSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 342
++TV+ F K N G V ++K+RLVA G T+ +IDY E FAP +++TVLA+A EDL+
Sbjct: 920 RKTVQCKWVFKTKVNPKGGVDRYKARLVAKGFTQRPEIDYFETFAPVARYDSIRTVLAIAADEDLE 985
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5JUR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR2_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.990e-7 Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query: 5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
ND E LP +DV+ SKYR+ W+EAIKKE H+KTGTF+ + EG+K + +++F K
Sbjct: 214 NDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYK 274
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 2.350e-7 Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query: 5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
ND E LP +DV+ SKYR+ W+EAIKKE H+KTGTF+ + EG+K + +++F K
Sbjct: 730 NDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYK 790
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5JTQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ9_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 2.380e-7 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 2
Query: 5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
+D E +P DV SKY+ FWE A+KKE VHDKTGTFT V + EG+K + +++F K
Sbjct: 1561 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDVHDKTGTFTKVKELPEGRKAIGSKWVFSWK 1621
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 2.380e-7 Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query: 5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
ND E LP +DV+ SKYR+ W+EAIKKE H+KTGTF+ + EG+K + +++F K
Sbjct: 1283 NDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYK 1343
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A0C4F1T1_PUCT1 (Uncharacterized protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4F1T1_PUCT1) HSP 1 Score: 57.8 bits (138), Expect = 2.410e-7 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 142 RKETVEGTVH-FSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQED 336
R+ T+ GTV F +TN G +V+FK+RL A G + IDY E FAPT A+A+++VLA V ++
Sbjct: 353 RQATLLGTVWVFRIETNAAGEIVRFKARLCAQGSAQQDGIDYNETFAPTGRASALRSVLAYGVNKN 418
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 2.800e-7 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 2
Query: 5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
+D E LP DVR SKY+ FWE A++KE HDKTGTFT V + EG+K + +++F K
Sbjct: 67 SDVEALPTTYKDVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWK 127
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: UPI0003F4A63A (uncharacterized protein n=1 Tax=Tremella mesenterica (strain ATCC 24925 / CBS 8224 / DSM 1558 / NBRC 9311 / NRRL Y-6157 / RJB 2259-6 / UBC 559-6) TaxID=578456 RepID=UPI0003F4A63A) HSP 1 Score: 57.4 bits (137), Expect = 3.180e-7 Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 172 FSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 342
F KT+ GN++K+KSRLVA G ++ +DYEE FAP + +++ +L +A EDL+
Sbjct: 392 FKVKTDSEGNLLKYKSRLVAQGFSQVPGVDYEETFAPVGRSGSLRILLTIAATEDLE 448 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig56509.13181.1 >prot_H-paniculata_contig56509.13181.1 ID=prot_H-paniculata_contig56509.13181.1|Name=mRNA_H-paniculata_contig56509.13181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp MGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQback to top mRNA from alignment at H-paniculata_contig56509:679..1020+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig56509.13181.1 ID=mRNA_H-paniculata_contig56509.13181.1|Name=mRNA_H-paniculata_contig56509.13181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig56509:679..1020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig56509:679..1020+ >mRNA_H-paniculata_contig56509.13181.1 ID=mRNA_H-paniculata_contig56509.13181.1|Name=mRNA_H-paniculata_contig56509.13181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig56509:679..1020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |