mRNA_H-paniculata_contig56509.13181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56509.13181.1
Unique NamemRNA_H-paniculata_contig56509.13181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA)

HSP 1 Score: 60.5 bits (145), Expect = 2.760e-8
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  145 KETVEGTVHFSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 342
            ++T++    F  KTN  G V K+K+RLVA G ++  +IDY E FAP     +V+T+LA+A  EDL+
Sbjct:  818 RKTIQCKWIFKSKTNSHGEVSKYKARLVAKGYSQRAEIDYSETFAPVVRYESVRTLLAIAADEDLE 883          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5K308_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K308_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.200e-7
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 2
Query:    5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
            +D E +P    DV  SKY+ FWE A+KKE G HDKTGTFT V +  EG+K +  +++F  K
Sbjct:  181 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIGGHDKTGTFTKVKELPEGRKAIGSKWVFSCK 241          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A085N6C0_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N6C0_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 1.830e-7
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query:  145 KETVEGTVHFSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 342
            ++TV+    F  K N  G V ++K+RLVA G T+  +IDY E FAP     +++TVLA+A  EDL+
Sbjct:  920 RKTVQCKWVFKTKVNPKGGVDRYKARLVAKGFTQRPEIDYFETFAPVARYDSIRTVLAIAADEDLE 985          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5JUR2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.990e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:    5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
            ND E LP   +DV+ SKYR+ W+EAIKKE   H+KTGTF+ +    EG+K +  +++F  K
Sbjct:  214 NDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYK 274          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.350e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:    5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
            ND E LP   +DV+ SKYR+ W+EAIKKE   H+KTGTF+ +    EG+K +  +++F  K
Sbjct:  730 NDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYK 790          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5JTQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.380e-7
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 2
Query:    5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
            +D E +P    DV  SKY+ FWE A+KKE  VHDKTGTFT V +  EG+K +  +++F  K
Sbjct: 1561 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDVHDKTGTFTKVKELPEGRKAIGSKWVFSWK 1621          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.380e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:    5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
            ND E LP   +DV+ SKYR+ W+EAIKKE   H+KTGTF+ +    EG+K +  +++F  K
Sbjct: 1283 NDVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYK 1343          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A0C4F1T1_PUCT1 (Uncharacterized protein n=1 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4F1T1_PUCT1)

HSP 1 Score: 57.8 bits (138), Expect = 2.410e-7
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  142 RKETVEGTVH-FSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQED 336
            R+ T+ GTV  F  +TN  G +V+FK+RL A G  +   IDY E FAPT  A+A+++VLA  V ++
Sbjct:  353 RQATLLGTVWVFRIETNAAGEIVRFKARLCAQGSAQQDGIDYNETFAPTGRASALRSVLAYGVNKN 418          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.800e-7
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 2
Query:    5 NDAEPLPRHIDDVRRSKYRRFWEEAIKKEKGVHDKTGTFTVVSD-SEGKKPLRGQFIFRIK 184
            +D E LP    DVR SKY+ FWE A++KE   HDKTGTFT V +  EG+K +  +++F  K
Sbjct:   67 SDVEALPTTYKDVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWK 127          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: UPI0003F4A63A (uncharacterized protein n=1 Tax=Tremella mesenterica (strain ATCC 24925 / CBS 8224 / DSM 1558 / NBRC 9311 / NRRL Y-6157 / RJB 2259-6 / UBC 559-6) TaxID=578456 RepID=UPI0003F4A63A)

HSP 1 Score: 57.4 bits (137), Expect = 3.180e-7
Identity = 25/57 (43.86%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  172 FSYKTNDMGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 342
            F  KT+  GN++K+KSRLVA G ++   +DYEE FAP   + +++ +L +A  EDL+
Sbjct:  392 FKVKTDSEGNLLKYKSRLVAQGFSQVPGVDYEETFAPVGRSGSLRILLTIAATEDLE 448          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V1MB43_9BILA2.760e-843.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5K308_9PHAE1.200e-749.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A085N6C0_9BILA1.830e-743.94Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
A0A6H5JUR2_9PHAE1.990e-747.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE2.350e-747.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ9_9PHAE2.380e-749.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.380e-747.54Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A0C4F1T1_PUCT12.410e-745.45Uncharacterized protein n=1 Tax=Puccinia triticina... [more]
A0A6H5KEA7_9PHAE2.800e-749.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0003F4A63A3.180e-743.86uncharacterized protein n=1 Tax=Tremella mesenteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56509contigH-paniculata_contig56509:679..1020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size343
Cds size150
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930603.166253-UTR-H-paniculata_contig56509:678..8701622930603.166253-UTR-H-paniculata_contig56509:678..870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56509 679..870 +
1691481367.8272052-UTR-H-paniculata_contig56509:678..8701691481367.8272052-UTR-H-paniculata_contig56509:678..870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56509 679..870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930603.1864686-CDS-H-paniculata_contig56509:870..10201622930603.1864686-CDS-H-paniculata_contig56509:870..1020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56509 871..1020 +
1691481367.8394048-CDS-H-paniculata_contig56509:870..10201691481367.8394048-CDS-H-paniculata_contig56509:870..1020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56509 871..1020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56509.13181.1prot_H-paniculata_contig56509.13181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56509 871..1020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56509.13181.1

>prot_H-paniculata_contig56509.13181.1 ID=prot_H-paniculata_contig56509.13181.1|Name=mRNA_H-paniculata_contig56509.13181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ
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mRNA from alignment at H-paniculata_contig56509:679..1020+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56509.13181.1 ID=mRNA_H-paniculata_contig56509.13181.1|Name=mRNA_H-paniculata_contig56509.13181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig56509:679..1020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGAATGATGCAGAACCTTTACCTCGACACATAGATGATGTGCGACGAT CAAAATACCGTCGGTTTTGGGAGGAGGCGATTAAAAAGGAAAAGGGGGTT CATGATAAGACGGGAACGTTTACCGTAGTAAGTGACAGTGAAGGAAAGAA ACCGTTGAGGGGACAGTTCATTTTTCGTATAAAACTAACGACATGGGAAA TGTGGTAAAGTTCAAGTCAAGACTGGTAGCTGATGGAAGGACACGAACCC AAGACATAGACTACGAGGAAGTTTTTGCCCCCACCCCTTCCGCCGCTGCT GTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGATTTACAA
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Coding sequence (CDS) from alignment at H-paniculata_contig56509:679..1020+

>mRNA_H-paniculata_contig56509.13181.1 ID=mRNA_H-paniculata_contig56509.13181.1|Name=mRNA_H-paniculata_contig56509.13181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig56509:679..1020+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAATGTGGTAAAGTTCAAGTCAAGACTGGTAGCTGATGGAAGGAC
ACGAACCCAAGACATAGACTACGAGGAAGTTTTTGCCCCCACCCCTTCCG
CCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGATTTACAA
ATGGGAAATGTGGTAAAGTTCAAGTCAAGACTGGTAGCTGATGGAAGGAC
ACGAACCCAAGACATAGACTACGAGGAAGTTTTTGCCCCCACCCCTTCCG
CCGCTGCTGTAAAGACGGTGTTAGCCGTAGCAGTACAGGAGGATTTACAA
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