mRNA_H-paniculata_contig56350.13163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA) HSP 1 Score: 176 bits (446), Expect = 6.170e-47 Identity = 91/241 (37.76%), Postives = 139/241 (57.68%), Query Frame = 1
Query: 34 VVDTKLLHERLGHF--------------RDLPTL----GVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
V D+ L H+RLGHF ++LP + +C VC+ K K P + + TE L+LVHTD+ GP+ S G ++ ++F+DDY+RM V L++KS+ +F+ V GL+++RL SD G EYT F++FC + G + + + TPQ+NGV+E ++ EMA + + + +WAE V ++VY LN +PT+ G TP E WHG TP+++HL+VFGC Y
Sbjct: 390 VNDSFLWHKRLGHFSYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCY 630
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 162 bits (409), Expect = 7.150e-45 Identity = 98/255 (38.43%), Postives = 137/255 (53.73%), Query Frame = 1
Query: 10 KNTEKRQQVVDTKLLHERLGHF-----------------RDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVA------RANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGG-TPNEKWHGETPNLDHLRVFGCTAY 699
K+ E+ V +L H+R GH + + GVC CE+ K +K+ E+ E LELVHTD+ GPV+ +S GG R+AI F DDY+R R V+ ++ KSE+L LK++ +D+ + N LR L SD GGEYTG F+ FC +G +Q+F PQ NG+AE SW + MA A I A +G+ +WAE + +A Y NR G TP K G+ ++ HLR FGC A+
Sbjct: 10 KSREEANVVYSPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRSRNSALGPGETPYYKMFGKHASVKHLRTFGCKAF 262
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS) HSP 1 Score: 167 bits (423), Expect = 7.540e-44 Identity = 97/247 (39.27%), Postives = 139/247 (56.28%), Query Frame = 1
Query: 31 QVVDTK---LLHERLGHF--------------RDLPTL------GVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPV-DKSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
QV + K L H+RLGH LP L G+C +C + K +++ + + + +L+LVHTDI GP+ S G R+ I F+DDYSR L +KSEAL A K+F+ R GL + L SD+GGEY +F+ +C ENG K++ +AA TPQ+NG+AE SI MA M+ ++ R +W E V+ AV+ LNR P+ TP+E+W P+++H+RVFGC AY
Sbjct: 428 QVTEEKMEDLWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAY 674
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A151RMC4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RMC4_CAJCA) HSP 1 Score: 167 bits (422), Expect = 1.020e-43 Identity = 94/244 (38.52%), Postives = 138/244 (56.56%), Query Frame = 1
Query: 37 VDTKLLHERLGHF--------------RDLPTLGVCS-VCEKEKASKQPGKQYREE-------QTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
+D+KL H+R GH+ +DLP + +CS VCE S Q GKQYR + E LELVH+D+ GP+ S G ++ I+F+DD++RM V+ L+QKSE K+F+ V +G +++L +D G EYT F FC + G + + + + +PQ+NGVAE S+ EMA + + + +WAE + +AVY NR+PTR G TP E W G P++ HL+VFG Y
Sbjct: 403 LDSKLWHKRFGHYNLKSIQFAQKQELVKDLPNIQICSEVCE----SCQLGKQYRLPFPNSVTWRANEKLELVHSDVCGPMKTTSLNGNKYFILFIDDFTRMTWVYFLKQKSEVFSVFKKFKALVEAQSGFLLKKLRTDNGKEYTSTEFNIFCDDLGVEHQLTVSYSPQQNGVAERKNRSVLEMARCMIFEKKLPKSFWAEAINTAVYLQNRLPTRAIKGMTPVEAWGGIKPSVRHLKVFGSLCY 642
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.750e-43 Identity = 99/255 (38.82%), Postives = 138/255 (54.12%), Query Frame = 1
Query: 10 KNTEKRQQVVDTKLLHERLGHF-----------------RDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVA------RANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGG-TPNEKWHGETPNLDHLRVFGCTAY 699
K+ E+ V +L H+R GH + + GVC CE+ K +K+ E+ E LELVHTD+ GPV+ +S GG R+AI F DDY+R R V+ ++ KSE+L LK++ +D+ + N LR L SD GGEYTG F+ FC +G +Q+F PQ NGVAE SW + MA + I A +G+ +WAE + +A Y LNR T G TP K G+ ++ H R FGC A+
Sbjct: 10 KSREEANVVYAPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAF 262
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6S7FZB6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FZB6_PARCT) HSP 1 Score: 162 bits (409), Expect = 1.700e-42 Identity = 92/237 (38.82%), Postives = 135/237 (56.96%), Query Frame = 1
Query: 49 LLHERLGHFR----------------DLPTLGVCSVCE---KEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
L H+R+ H D+P G SVCE + KA + P K E ++T LELVH+D+AGP+ +SFGG ++ + F+DDYSR V+ ++ KSE L K++E V +I+ L +D GGEYT F+ F E G + E + +PQ+NGVAE ++ E A + ++ A + + +WAE V +A Y NRV T TP E+W+G+ P++ +LRVFGCTAY
Sbjct: 400 LWHQRMAHLNAGQMKIMASKELITGTDIPGTGKLSVCEPCAEGKAHRAPFKPAGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVYPMKYKSEVLEKFKEWEAAVTNQAECKIKTLQTDNGGEYTSTEFQDFLKEKGIRHETTVPHSPQQNGVAERMNRTLQEAALSMILHAGLSKAFWAEAVCNAAYVRNRVITTA-TAVTPYERWYGKKPDVSNLRVFGCTAY 635
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 163 bits (412), Expect = 2.090e-42 Identity = 83/195 (42.56%), Postives = 121/195 (62.05%), Query Frame = 1
Query: 139 GKQYREEQTTES-------LELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
GKQ+R+ +S LEL+HTDI GP+ S G + ++F+DD+SR V+ L+QKSEA K+F+ V + +GL I+ + SD+GGE+T + F+ FC ++G ++ + +PQ+NGVAE +I +MA + + + N+ + +WAE V AVY LNR PTR G TP E W G P + HLRVFG AY
Sbjct: 156 GKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAY 350
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR) HSP 1 Score: 159 bits (402), Expect = 2.510e-42 Identity = 91/241 (37.76%), Postives = 126/241 (52.28%), Query Frame = 1
Query: 37 VDTKLLHERLGH-------------------FRDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
+ ++ H RLGH + D+ VC C K K S++P ++T++L+LVHTD+ GP+ K+F G R+ + F+DDYSR + L KSE + E V RI+ L SD+G EY K F FC G Q+F+A+ TPQ+NGVAE +I E A + A + YW E V++AVY NR T+ TP E W G+ P+L +LRVFGC AY
Sbjct: 111 ISIEIWHHRLGHISKDTIRHMMTNKMVDGLSYSDITKDTVCEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAY 351
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A0A1WGJ2_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WGJ2_ZEUCU) HSP 1 Score: 162 bits (409), Expect = 4.570e-42 Identity = 90/230 (39.13%), Postives = 132/230 (57.39%), Query Frame = 1
Query: 13 NTEKRQQVVDTKLLHERLGHFRDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
N E +Q+VD L+ R + D+ + C C K K P + E +T + LELVHTD+ GP++ KS GG R+ + F+DD+SRM ++++++KSE K F+ V I++L SD G EYT F +F E G K++ + TPQ+NGVAE +I EMA + ++ AN+ W E V +AVY NR PT+ TP E W+ + P++ HLRVFG A+
Sbjct: 411 NFESLKQIVDNNLV--RGLNKIDINSKTNCDTCNKSKICAVPFPKKCERETKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY) HSP 1 Score: 161 bits (407), Expect = 5.220e-42 Identity = 83/205 (40.49%), Postives = 118/205 (57.56%), Query Frame = 1
Query: 88 TLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
T+ C C K K + P Q + + TE LEL+H+D+ GP++ S GG R+ + +DDY+RM V L+ K+E L +F + G RI+ + SD+GGEY K F +E G + + A TP++NGVAE ++ E A A + AN+ + YWAE V +A YC NR PT + TP E W GE P+L H+R FGC A+
Sbjct: 120 TMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGEYVNKQLETFFSETGIHHQLTIAHTPEQNGVAERCNRTLIEKARAMLTEANLDKSYWAEAVCTANYCKNRSPTIAVSHMTPFEAWTGEKPDLSHMRTFGCRAF 324 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig56350.13163.1 >prot_H-paniculata_contig56350.13163.1 ID=prot_H-paniculata_contig56350.13163.1|Name=mRNA_H-paniculata_contig56350.13163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp MRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQback to top mRNA from alignment at H-paniculata_contig56350:301..1035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig56350.13163.1 ID=mRNA_H-paniculata_contig56350.13163.1|Name=mRNA_H-paniculata_contig56350.13163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at H-paniculata_contig56350:301..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig56350:301..1035+ >mRNA_H-paniculata_contig56350.13163.1 ID=mRNA_H-paniculata_contig56350.13163.1|Name=mRNA_H-paniculata_contig56350.13163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig56350:301..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |