mRNA_H-paniculata_contig56350.13163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56350.13163.1
Unique NamemRNA_H-paniculata_contig56350.13163.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 176 bits (446), Expect = 6.170e-47
Identity = 91/241 (37.76%), Postives = 139/241 (57.68%), Query Frame = 1
Query:   34 VVDTKLLHERLGHF--------------RDLPTL----GVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            V D+ L H+RLGHF              ++LP +     +C VC+  K  K P  +    + TE L+LVHTD+ GP+   S  G ++ ++F+DDY+RM  V  L++KS+      +F+  V    GL+++RL SD G EYT   F++FC + G + + +   TPQ+NGV+E    ++ EMA   +    + + +WAE V ++VY LN +PT+   G TP E WHG TP+++HL+VFGC  Y
Sbjct:  390 VNDSFLWHKRLGHFSYSTLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCY 630          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 162 bits (409), Expect = 7.150e-45
Identity = 98/255 (38.43%), Postives = 137/255 (53.73%), Query Frame = 1
Query:   10 KNTEKRQQVVDTKLLHERLGHF-----------------RDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVA------RANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGG-TPNEKWHGETPNLDHLRVFGCTAY 699
            K+ E+   V   +L H+R GH                  + +   GVC  CE+ K +K+       E+  E LELVHTD+ GPV+ +S GG R+AI F DDY+R R V+ ++ KSE+L  LK++ +D+       + N LR   L SD GGEYTG  F+ FC  +G +Q+F     PQ NG+AE SW  +  MA A  I A +G+ +WAE + +A Y  NR        G TP  K  G+  ++ HLR FGC A+
Sbjct:   10 KSREEANVVYSPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRSRNSALGPGETPYYKMFGKHASVKHLRTFGCKAF 262          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 167 bits (423), Expect = 7.540e-44
Identity = 97/247 (39.27%), Postives = 139/247 (56.28%), Query Frame = 1
Query:   31 QVVDTK---LLHERLGHF--------------RDLPTL------GVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPV-DKSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            QV + K   L H+RLGH                 LP L      G+C +C + K +++   +    + + +L+LVHTDI GP+   S  G R+ I F+DDYSR      L +KSEAL A K+F+    R  GL +  L SD+GGEY   +F+ +C ENG K++ +AA TPQ+NG+AE    SI  MA   M+  ++ R +W E V+ AV+ LNR P+      TP+E+W    P+++H+RVFGC AY
Sbjct:  428 QVTEEKMEDLWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAY 674          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A151RMC4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RMC4_CAJCA)

HSP 1 Score: 167 bits (422), Expect = 1.020e-43
Identity = 94/244 (38.52%), Postives = 138/244 (56.56%), Query Frame = 1
Query:   37 VDTKLLHERLGHF--------------RDLPTLGVCS-VCEKEKASKQPGKQYREE-------QTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            +D+KL H+R GH+              +DLP + +CS VCE    S Q GKQYR         +  E LELVH+D+ GP+   S  G ++ I+F+DD++RM  V+ L+QKSE     K+F+  V   +G  +++L +D G EYT   F  FC + G + + + + +PQ+NGVAE    S+ EMA   +    + + +WAE + +AVY  NR+PTR   G TP E W G  P++ HL+VFG   Y
Sbjct:  403 LDSKLWHKRFGHYNLKSIQFAQKQELVKDLPNIQICSEVCE----SCQLGKQYRLPFPNSVTWRANEKLELVHSDVCGPMKTTSLNGNKYFILFIDDFTRMTWVYFLKQKSEVFSVFKKFKALVEAQSGFLLKKLRTDNGKEYTSTEFNIFCDDLGVEHQLTVSYSPQQNGVAERKNRSVLEMARCMIFEKKLPKSFWAEAINTAVYLQNRLPTRAIKGMTPVEAWGGIKPSVRHLKVFGSLCY 642          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.750e-43
Identity = 99/255 (38.82%), Postives = 138/255 (54.12%), Query Frame = 1
Query:   10 KNTEKRQQVVDTKLLHERLGHF-----------------RDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVA------RANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGG-TPNEKWHGETPNLDHLRVFGCTAY 699
            K+ E+   V   +L H+R GH                  + +   GVC  CE+ K +K+       E+  E LELVHTD+ GPV+ +S GG R+AI F DDY+R R V+ ++ KSE+L  LK++ +D+       + N LR   L SD GGEYTG  F+ FC  +G +Q+F     PQ NGVAE SW  +  MA +  I A +G+ +WAE + +A Y LNR  T     G TP  K  G+  ++ H R FGC A+
Sbjct:   10 KSREEANVVYAPELWHQRFGHMNYEYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAF 262          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6S7FZB6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7FZB6_PARCT)

HSP 1 Score: 162 bits (409), Expect = 1.700e-42
Identity = 92/237 (38.82%), Postives = 135/237 (56.96%), Query Frame = 1
Query:   49 LLHERLGHFR----------------DLPTLGVCSVCE---KEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            L H+R+ H                  D+P  G  SVCE   + KA + P K   E ++T  LELVH+D+AGP+  +SFGG ++ + F+DDYSR   V+ ++ KSE L   K++E  V      +I+ L +D GGEYT   F+ F  E G + E +   +PQ+NGVAE    ++ E A + ++ A + + +WAE V +A Y  NRV T      TP E+W+G+ P++ +LRVFGCTAY
Sbjct:  400 LWHQRMAHLNAGQMKIMASKELITGTDIPGTGKLSVCEPCAEGKAHRAPFKPAGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVYPMKYKSEVLEKFKEWEAAVTNQAECKIKTLQTDNGGEYTSTEFQDFLKEKGIRHETTVPHSPQQNGVAERMNRTLQEAALSMILHAGLSKAFWAEAVCNAAYVRNRVITTA-TAVTPYERWYGKKPDVSNLRVFGCTAY 635          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 163 bits (412), Expect = 2.090e-42
Identity = 83/195 (42.56%), Postives = 121/195 (62.05%), Query Frame = 1
Query:  139 GKQYREEQTTES-------LELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            GKQ+R+    +S       LEL+HTDI GP+   S G   + ++F+DD+SR   V+ L+QKSEA    K+F+  V + +GL I+ + SD+GGE+T + F+ FC ++G ++  +   +PQ+NGVAE    +I +MA + + + N+ + +WAE V  AVY LNR PTR   G TP E W G  P + HLRVFG  AY
Sbjct:  156 GKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAY 350          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR)

HSP 1 Score: 159 bits (402), Expect = 2.510e-42
Identity = 91/241 (37.76%), Postives = 126/241 (52.28%), Query Frame = 1
Query:   37 VDTKLLHERLGH-------------------FRDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            +  ++ H RLGH                   + D+    VC  C K K S++P       ++T++L+LVHTD+ GP+  K+F G R+ + F+DDYSR    + L  KSE      + E  V      RI+ L SD+G EY  K F  FC   G  Q+F+A+ TPQ+NGVAE    +I E A   +  A +   YW E V++AVY  NR  T+     TP E W G+ P+L +LRVFGC AY
Sbjct:  111 ISIEIWHHRLGHISKDTIRHMMTNKMVDGLSYSDITKDTVCEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQAY 351          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A0A1WGJ2_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WGJ2_ZEUCU)

HSP 1 Score: 162 bits (409), Expect = 4.570e-42
Identity = 90/230 (39.13%), Postives = 132/230 (57.39%), Query Frame = 1
Query:   13 NTEKRQQVVDTKLLHERLGHFRDLPTLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            N E  +Q+VD  L+  R  +  D+ +   C  C K K    P  +  E +T + LELVHTD+ GP++ KS GG R+ + F+DD+SRM  ++++++KSE     K F+  V       I++L SD G EYT   F +F  E G K++ +   TPQ+NGVAE    +I EMA + ++ AN+    W E V +AVY  NR PT+     TP E W+ + P++ HLRVFG  A+
Sbjct:  411 NFESLKQIVDNNLV--RGLNKIDINSKTNCDTCNKSKICAVPFPKKCERETKQILELVHTDVCGPINVKSVGGARYFLTFIDDFSRMIFIYSIKEKSEVFEKFKTFKNMVENQTQKTIKKLRSDNGTEYTNNKFSEFLKECGIKRQLTVPYTPQQNGVAERVNRTIVEMARSLLVHANLKEELWGEAVHTAVYIRNRAPTKLLKHTTPYEVWYNKKPSVKHLRVFGARAF 638          
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY)

HSP 1 Score: 161 bits (407), Expect = 5.220e-42
Identity = 83/205 (40.49%), Postives = 118/205 (57.56%), Query Frame = 1
Query:   88 TLGVCSVCEKEKASKQPGKQYREEQTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*YWAEVVRSAVYCLNRVPTRPHNGGTPNEKWHGETPNLDHLRVFGCTAY 699
            T+  C  C K K  + P  Q +  + TE LEL+H+D+ GP++  S GG R+ +  +DDY+RM  V  L+ K+E    L +F   +    G RI+ + SD+GGEY  K    F +E G   + + A TP++NGVAE    ++ E A A +  AN+ + YWAE V +A YC NR PT   +  TP E W GE P+L H+R FGC A+
Sbjct:  120 TMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGEYVNKQLETFFSETGIHHQLTIAHTPEQNGVAERCNRTLIEKARAMLTEANLDKSYWAEAVCTANYCKNRSPTIAVSHMTPFEAWTGEKPDLSHMRTFGCRAF 324          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA6.170e-4737.76Retrovirus-related Pol polyprotein from transposon... [more]
W7TGQ6_9STRA7.150e-4538.43Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
A0A6D2IM54_9BRAS7.540e-4439.27Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A151RMC4_CAJCA1.020e-4338.52Retrovirus-related Pol polyprotein from transposon... [more]
W7TIQ5_9STRA1.750e-4338.82Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A6S7FZB6_PARCT1.700e-4238.82Retrovirus-related Pol poly from transposon TNT 1-... [more]
UPI001F0044642.090e-4242.56DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A3S3RF48_9ACAR2.510e-4237.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A1WGJ2_ZEUCU4.570e-4239.13Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1LP39_PHOPY5.220e-4240.49Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56350contigH-paniculata_contig56350:301..1035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue8.4e-10
Seed eggNOG ortholog67593.Physo140801
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size699
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56350.13163.1prot_H-paniculata_contig56350.13163.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56350 604..891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.1499958-UTR-H-paniculata_contig56350:300..3901622930600.1499958-UTR-H-paniculata_contig56350:300..390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56350 301..390 +
1691481366.3398504-UTR-H-paniculata_contig56350:300..3901691481366.3398504-UTR-H-paniculata_contig56350:300..390Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56350 301..390 +
1622930600.1660178-UTR-H-paniculata_contig56350:426..6031622930600.1660178-UTR-H-paniculata_contig56350:426..603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56350 427..603 +
1691481366.3534646-UTR-H-paniculata_contig56350:426..6031691481366.3534646-UTR-H-paniculata_contig56350:426..603Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56350 427..603 +
1622930600.2106373-UTR-H-paniculata_contig56350:891..10351622930600.2106373-UTR-H-paniculata_contig56350:891..1035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56350 892..1035 +
1691481366.3702972-UTR-H-paniculata_contig56350:891..10351691481366.3702972-UTR-H-paniculata_contig56350:891..1035Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56350 892..1035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.1920588-CDS-H-paniculata_contig56350:603..8911622930600.1920588-CDS-H-paniculata_contig56350:603..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56350 604..891 +
1691481366.3619812-CDS-H-paniculata_contig56350:603..8911691481366.3619812-CDS-H-paniculata_contig56350:603..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56350 604..891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56350.13163.1

>prot_H-paniculata_contig56350.13163.1 ID=prot_H-paniculata_contig56350.13163.1|Name=mRNA_H-paniculata_contig56350.13163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQ
FCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*
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mRNA from alignment at H-paniculata_contig56350:301..1035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56350.13163.1 ID=mRNA_H-paniculata_contig56350.13163.1|Name=mRNA_H-paniculata_contig56350.13163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at H-paniculata_contig56350:301..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATCCCGAAGAACACTGAGAAGAGACAACAGGTGGTGGACACCAAGTT ACTACATGAGCGACTTGGGCATTTTCGAGACCTTCCCACAGTCGCGCGGC AACAAGGCATAAGGTTAAGCGGGAAGCTAGGTGTCTGCTCGGTGTGTGAG AAGGAGAAAGCGTCGAAGCAGCCCGGAAAACAGTATCGAGAAGAGCAGAC GACCGAGTCGTTGGAGCTGGTGCACACCGACATAGCCGGACCGGTGGACA AGTCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCGACGACTACAGC AGAATGCGCAAAGTGCATACCTTGCGACAAAAGTCGGAGGCGCTATGGGC CTTGAAGCAATTCGAGAGAGACGTAGCGAGGGCAAACGGTTTGCGGATTA GGCGCCTTGGATCGGATCAGGGAGGAGAATATACTGGGAAGTCTTTTAGG CAATTCTGTGCGGAAAATGGCACCAAGCAGGAGTTTTCTGCCGCCGGCAC ACCGCAACGAAACGGTGTGGCGGAGTACAGCTGGTGCAGCATTTTCGAGA TGGCAACAGCCAGCATGATCACCGCCAACATGGGTCGTTGATATTGGGCG GAAGTGGTGCGCTCGGCAGTGTACTGCCTGAATCGCGTCCCGACGCGACC GCACAACGGAGGAACGCCGAACGAAAAGTGGCACGGCGAGACACCGAATT TGGACCACCTTCGCGTCTTCGGCTGCACGGCGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig56350:301..1035+

>mRNA_H-paniculata_contig56350.13163.1 ID=mRNA_H-paniculata_contig56350.13163.1|Name=mRNA_H-paniculata_contig56350.13163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig56350:301..1035+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCAAAGTGCATACCTTGCGACAAAAGTCGGAGGCGCTATGGGCCTT
GAAGCAATTCGAGAGAGACGTAGCGAGGGCAAACGGTTTGCGGATTAGGC
GCCTTGGATCGGATCAGGGAGGAGAATATACTGGGAAGTCTTTTAGGCAA
TTCTGTGCGGAAAATGGCACCAAGCAGGAGTTTTCTGCCGCCGGCACACC
GCAACGAAACGGTGTGGCGGAGTACAGCTGGTGCAGCATTTTCGAGATGG
CAACAGCCAGCATGATCACCGCCAACATGGGTCGTTGAATGCGCAAAGTG
CATACCTTGCGACAAAAGTCGGAGGCGCTATGGGCCTTGAAGCAATTCGA
GAGAGACGTAGCGAGGGCAAACGGTTTGCGGATTAGGCGCCTTGGATCGG
ATCAGGGAGGAGAATATACTGGGAAGTCTTTTAGGCAATTCTGTGCGGAA
AATGGCACCAAGCAGGAGTTTTCTGCCGCCGGCACACCGCAACGAAACGG
TGTGGCGGAGTACAGCTGGTGCAGCATTTTCGAGATGGCAACAGCCAGCA
TGATCACCGCCAACATGGGTCGTTGA
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