mRNA_H-paniculata_contig5635.13162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5635.13162.1
Unique NamemRNA_H-paniculata_contig5635.13162.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5635.13162.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.400e-17
Identity = 42/53 (79.25%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:  271 ANWYLRAADGSRQGPYGLPQLGEWSDAGYVSPDSQVQWGPSGTPQPLSSALGA 429
            +NWYLRA DGS QGPYGL QLGEWS AGYVS DSQVQWG  G PQ LSS LGA
Sbjct:   38 SNWYLRAPDGSSQGPYGLSQLGEWSRAGYVSADSQVQWGAGGPPQALSSVLGA 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5635.13162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXW6_ECTSI1.400e-1779.25ABC transporter ATP-binding protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5635contigH-paniculata_contig5635:9041..12144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue5.6e-16
Seed eggNOG ortholog2880.D7FXW6
KEGG rclassRC00912,RC01690
KEGG koko:K17842
KEGG ReactionR09782
KEGG Pathwayko00906,ko01100,map00906,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0055@2759
EC1.13.11.59
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size450
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5635.13162.1prot_H-paniculata_contig5635.13162.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5635 9221..12144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.0463133-UTR-H-paniculata_contig5635:9040..92201622930600.0463133-UTR-H-paniculata_contig5635:9040..9220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5635 9041..9220 +
1691481366.3073273-UTR-H-paniculata_contig5635:9040..92201691481366.3073273-UTR-H-paniculata_contig5635:9040..9220Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5635 9041..9220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.0728245-CDS-H-paniculata_contig5635:9220..94071622930600.0728245-CDS-H-paniculata_contig5635:9220..9407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5635 9221..9407 +
1691481366.3209784-CDS-H-paniculata_contig5635:9220..94071691481366.3209784-CDS-H-paniculata_contig5635:9220..9407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5635 9221..9407 +
1622930600.092774-CDS-H-paniculata_contig5635:12061..121441622930600.092774-CDS-H-paniculata_contig5635:12061..12144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5635 12062..12144 +
1691481366.3292-CDS-H-paniculata_contig5635:12061..121441691481366.3292-CDS-H-paniculata_contig5635:12061..12144Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5635 12062..12144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5635.13162.1

>prot_H-paniculata_contig5635.13162.1 ID=prot_H-paniculata_contig5635.13162.1|Name=mRNA_H-paniculata_contig5635.13162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MKFHVSTVLAAVNIVGLSPNPIQANAGQGGANWYLRAADGSRQGPYGLPQ
LGEWSDAGYVSPDSQVQWGPSGTPQPLSSALGAEREGQSG
back to top

mRNA from alignment at H-paniculata_contig5635:9041..12144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5635.13162.1 ID=mRNA_H-paniculata_contig5635.13162.1|Name=mRNA_H-paniculata_contig5635.13162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3104bp|location=Sequence derived from alignment at H-paniculata_contig5635:9041..12144+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGGAACATAAGTCATAATCTTCAATCCACCATCATCCTCAACCTCACC
TCTATTCCCGTCATCAAGGAAGCTAGGGCACGCGCATCCCGTACCACAAG
TATCCACGCCTCTTGGCTCTACGGCCTCAATATTTTCCCTCCAAGCTCCT
AGCTTAGGTCGGCGCTTAGCTCCTTAGCTCATGAAGTTCCACGTGTCAAC
GGTTTTGGCTGCAGTAAACATTGTAGGTTTGAGCCCTAACCCCATCCAGG
CGAATGCTGGGCAGGGGGGAGCGAATTGGTATCTGCGCGCCGCTGATGGT
TCACGTCAGGGACCTTATGGTCTTCCCCAGCTCGGGGAGTGGTCGGATGC
TGGCTATGTGTCTCCAGGTGGGGTTTGAATTGTGTGCCCAACGATATAAC
TGGTTTCACAGTACTAGACGCAGAAGTGCCGAACTAGCTGAGCATCATGC
AGCATCTCCAATACTCATCGTTGTCGATACCAGACATCTACAGCAGAACC
GTAAAGCTATACAATGCAGCAAGGCCCCATCAGCTATGGTGAATTTACTG
CTGTTCGATATCTGAGCTCCGGAGTATCCTGTTAGTATAAGAGTGATACT
GCAACATTCCGCTTTGGAGATGCTACCCTCAATCCTTTTTTTCGATTACC
CAGGAGAAACGTTCTAAATGTCTCTTTTGCCACCAGGTGAGGTTATTCTC
CAGCCATGCGTTGAGTTATCCCGCGGCCTGTAGACTGGTTCGGAACAACG
CAAGCACGTGACAATAAATACCGAGTGGTGCAGTTGTTGTGGATAGACTA
TGCCAACCATCCTGTGTGCACTATACTGCTTCGTGCTGTATGTTGTGTAT
GTTCTCTGTTCTGAATTGCGAGCCTGCTTTTAAGGCGAAGATCGCATAGG
GATTAATTACACTATAGATGGGAGAAGGTGCTAAAAAGAGTTCAAGGTTC
GTTTTTTCCAAGAGGGTAATTTTTGTTTTCGTCGTTGTAAACATCGAAAA
AGAAAAGAGCTGCCTTGTCTGGGACCTGTAGATTTCAAAGTTTGCTGTGA
ACCGGGAAATGTTTCCCTTGCTACAGTCCCTGCTCGGAGACAGCTACATA
GGTACGTGCCCCTTCATTCAAAACTAGCGGTAGAGCCACGGCTACGCCCA
TGCAGTTCGTTCTTGTCATCGACCAATGGATTGACGTGACTCGCTACTGT
CGTATTAAGAGTCGTTTTTCAAGAGATACTTCAGTTCAGGCTTAAAAAAC
TGTTCTGAATCTATGACAACCACCATGACTCGCTCGCATGTAAGCACAAT
GTCCATGAAATTGTTTGATTCTAAAGCATTCGCCTGAGTTTCAGAATGAG
CTCGTGTGTTATATGTGCCCCGGACCATCCACGACTACTAATAATACTCG
TAAATCGAATGGACAGGAGTGGGTACTTGATTCTATGTGTCAGCTGATTC
TAAAACTCAGGTGAATACTTCTTAATTTTCGTGGCGAACACGCAAATATT
CGTATTTATCTGGAAGGCGAAATATACCGAAATCATCCCCCAAAATTGTG
GATGCTGTCTGTAGGGCATCATCCATTCATGTGCGCAAAGATATATTTTT
TCAAGTATTTTTTCTGTCATCTCAGTATGTTACATCCCGCCCCTCTCTGG
TTGTATTGTCATTTGCCACCATTCACTGATATGGCGCTGATCAGTGAGTA
CATAACTCATGAAATTTGACCTCAGCAAGATGAGCAGATATAGAGGGATA
CTCAGTAAAAGGTGCAACAAAAATTATCCCGTTGTACGTGCGTCGCTTTT
TCTCCCCCATTCTCCTCCATCGGAAATAGCTCGGATAGGAACGAAGCTCT
GTCCTCTCAAGAACGCGTGGTCAATCGTCCAACAACTACCGCATGTCAAC
TATATTAGTACGCCCCCCCCTCCCCCTCCCCCTCCCTCTCCCCTTTTTCC
TCTGCGCATGCACGCGGCCAACTTTCCCACCCCATAACTCTCACCACTTG
CCAGGATCTCAGGGTACTTACATCCAGCTTTCAGACGGATTACCGCAACG
GTCACTCAAAGCGCCTTGTCTGTTGAGAACCCCTCGAGGAGTACCGAATT
AGCTCCAAAACCTTGGTCGCCCCCGGGTGGGGTTACCAAAAGATTGCGAA
AAAAAAAAAAGAATCGCTCCCTGGGTGATCGAATTGTTTGTGAGAACGCC
CCCCGGAGCCCTTGACTTTTTCGCTCAAAAATTACCACAAGTGGGCACCA
ATGCGTATCATAGATCTCTGTATATCTACCGATACGGCGCTCCCCAGGTA
TGCGTGCATCTATACTTATTGGCCTATTGTTTATAGATATTATCGAGACT
TGACATGGTTCGTGGGCACTGCGTGGCCAGAGCCCAGCGTATTGTGCGTC
TTCGCGTGGGAAGTGTGTAGTGTAGTATATTATTATAATCTCTCCGGAAC
CCGCCCGATCACTTAACGTTATCAAGAAATGCTCCACGGTCGGACAGAAT
GCCCCCGTGCAGCAATGGTTTGAGTAAAACAGACTATGCTCTACCCTTCC
CGAGGCGTTCTGAGCGACTGACACGGTATATACGTACCTGCAAACGCAAA
AGCTCAACAGACAGTGATTACTTGTCTTGACAGGTAGGCCTGGCCTTCTT
CCGTATTCCATGTTGCCGATAAGTATACAGGAGTGTCCGAGATATAGACT
GCCTCGACCTCAGCATGATACCCTCACACATGGTGTAGTAAAGTCTTACA
CGAAAACCTTCACTTTTCTTACCAATAGTGTGCATTTTTATCGCCCCCCC
CCGCTCCCATCGTTTTGGAGTTTTTGTGACTTTCTTCTGAGTATATCTCG
TCGTAATTCTGCGCTAACTAATATGACCCTACCAAACGCATATATTTGTT
CAAGCTACTGTAATATATGTACATGAGATATGCTAGAGGTTTATCGTGCA
TGATCATCTTTGCTAGAGTTCGTGGTTTATCGTGTCTCTGCCCCCCCCCC
CCCCTCCCCTACCTCCCAAAGACTCCCAGGTACAATGGGGTCCATCAGGG
ACTCCCCAACCTTTATCCAGTGCGCTCGGAGCAGAACGGGAGGGGCAATC
AGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5635:9041..12144+

>mRNA_H-paniculata_contig5635.13162.1 ID=mRNA_H-paniculata_contig5635.13162.1|Name=mRNA_H-paniculata_contig5635.13162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig5635:9041..12144+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTTCCACGTGTCAACGGTTTTGGCTGCAGTAAACATTGTAGGTTT
GAGCCCTAACCCCATCCAGGCGAATGCTGGGCAGGGGGGAGCGAATTGGT
ATCTGCGCGCCGCTGATGGTTCACGTCAGGGACCTTATGGTCTTCCCCAG
CTCGGGGAGTGGTCGGATGCTGGCTATGTGTCTCCAGATGAAGTTCCACG
TGTCAACGGTTTTGGCTGCAGTAAACATTGTAGGTTTGAGCCCTAACCCC
ATCCAGGCGAATGCTGGGCAGGGGGGAGCGAATTGGTATCTGCGCGCCGC
TGATGGTTCACGTCAGGGACCTTATGGTCTTCCCCAGCTCGGGGAGTGGT
CGGATGCTGGCTATGTGTCTCCAGACTCCCAGGTACAATGGGGTCCATCA
GGGACTCCCCAACCTTTATCCAGTGCGCTCGGAGCAGAACGGGAGGGGCA
ATCAGGCACTCCCAGGTACAATGGGGTCCATCAGGGACTCCCCAACCTTT
ATCCAGTGCGCTCGGAGCAGAACGGGAGGGGCAATCAGGC
back to top