mRNA_H-paniculata_contig5614.13138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5614.13138.1 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE) HSP 1 Score: 538 bits (1386), Expect = 1.550e-173 Identity = 318/534 (59.55%), Postives = 379/534 (70.97%), Query Frame = 1
Query: 4 VNPYRQIKVHVLITKLEDNSGEHTEKNFELVADAILHHLGPSELPTTRALALDAAQTFVQRVLSSRSKDKKASKIRRRAFKGLLSNLIPLMLDCLKPGGGSNSNTLASSKKSS-----------STGDLGNGENGGVSAGTASRNLTGSMSEHGVDGVGGEVVVLHYY---HQYLLKVAVLETMHRFLMVLRALFKPPQSTNVQKAVAPLLDAEEDVLRDKAAAVLGQLSLCGKDNLKWVNIAIKVSLEAHNLLHDAWADEAAGQIPSKRLQTIMGDHPLLPPLQQTFEPGDAEAHVRAVGRRFPALCKLLATLISASPPKSHDADTAHGEP----------QQEQGASSKVVDQRPLLVSLTISLVQRVLRMGPQASSRCYNEVA-----DDGRGRGAAASP-------------GTLSPALAAGVTTQLLPPAVTLLEALVASSKLEDVMKDQQEAVCECMGQAVAQQMPVQGGVRAAVYRVMAFVIRYLQPQYAAAALGVPVLPLLFNEALLALGNRVSLHPLNTKRHAAP 1479
VNP+RQ+K+H L+ KLED++ E TE +F + DAIL HL PSE PTTRALALD AQTFVQ V+S RSKDK++SKIRR+AFK LL+ LIPLMLDCLK GS++++ + +S GD G+ E GG++AG G+GGEVVVLHYY HQYLLKVAVLETM+RFL +LRALFKPPQST VQK VAPLLDA E+VLR+KAAAVLG+LSLCG+D L W NIAIKVSLE+HNLL DAW DE GQIPS +++TIMG+HPLLPP+Q TF GD EAHV ++GRRFPALCKLLATL++ASPPKS + + ++ G+S Q P LVSL+ISLVQRVLRMG QA ++ E A D G R A++ GTLSP LAA V+ LLP AVTLLEALVASS+LE M+D+Q VC+CMGQAVAQ PVQGGVR A YR MA ++RY++P+ AA LGVP+LPLLFNEALLALGNRV+LH LNTK AP
Sbjct: 834 VNPWRQMKLHELMAKLEDSTPEETEASFGNIGDAILLHLRPSEPPTTRALALDVAQTFVQNVVSERSKDKRSSKIRRKAFKELLARLIPLMLDCLKSPAGSSNSSFPREENASLGGGGGQERGEGFGDGGDAEEGGLAAGK---------------GLGGEVVVLHYYQQHHQYLLKVAVLETMNRFLTILRALFKPPQSTRVQKVVAPLLDASEEVLREKAAAVLGKLSLCGRDTLTWANIAIKVSLESHNLLQDAWPDEIVGQIPSAQVETIMGEHPLLPPIQDTFNKGDVEAHVLSIGRRFPALCKLLATLVTASPPKSQEPEEGXXXXXXXXXXXXXXKEIDGSSDSAPFQTPFLVSLSISLVQRVLRMGEQAWAKLEEERAGVKRDDPGPTRRRASAKTAQESTTHTNTAAGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQ-TPVQGGVRFAAYRSMAVIVRYIKPETAAEGLGVPILPLLFNEALLALGNRVNLHALNTKTVVAP 1351
BLAST of mRNA_H-paniculata_contig5614.13138.1 vs. uniprot
Match: D7FHK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK6_ECTSI) HSP 1 Score: 483 bits (1243), Expect = 1.800e-161 Identity = 288/489 (58.90%), Postives = 349/489 (71.37%), Query Frame = 1
Query: 22 IKVHVLITKLEDNSGEHTEKNFELVADAILHHLGPSELPTTRALALDAAQTFVQRVLSSRSKDKKASKIRRRAFKGLLSNLIPLMLDCLKPGGGSNSNTLASSKKSSSTGDLGNGENGGVSAGTASRNLTGSMSEHGVD------GVGGEVVVLHYY---HQYLLKVAVLETMHRFLMVLRALFKPPQSTNVQKAVAPLLDAEEDVLRDKAAAVLGQLSLCGKDNLKWVNIAIKVSLEAHNLLHDAWADEAAGQIPSKRLQTIMGDHPLLPPLQQTFEPGDAEAHVRAVGRRFPALCKLLATLISASPPKSHDADTAHGEPQQEQGASSKVVDQRPLLVSLTISLVQRVLRMGPQASSRCYNEVADDGRGRGAAASPGTLSPALAAGVTTQLLPPAVTLLEALVASSKLEDVMKDQQEAVCECMGQAVAQQMPVQGGVRAAVYRVMAFVIRYLQPQYAAAALGVPVLPLLFNEALLALGNRVSLHPLNT 1461
+K+H L+ KLED++ E TE +F + +AIL HL PSE PTTRALALD AQTFVQ VLS RSKDK++SKIRRRAFK LL++LIPLMLDCLK GS+S++ + +S LGN G+GGEV+VLHYY HQYLLKVAVLETM+RFL VLRALF+PPQST VQK VAPLLDA E+VL++KAAAVLG+LSLCG+D LKW NIAIKVSLE+HNLL DAW DE GQ+PS +++TIMG+HPLLPP+Q TF GD EA+V ++GRRFPALCKLLATL++ASPPKS + + +Q A +K+ ++R + S +R +AS+ E A + + GTLSP LAA V+ LLP AVTLLEALVASS+LE M+D+Q VC+CMGQAVAQ PVQGGVR A YR MA +IRY++P AA LGVP+LPLLFNEALLALGNRV+LH LNT
Sbjct: 1 MKLHELMAKLEDSTAEETEASFGNIGEAILFHLKPSEPPTTRALALDVAQTFVQNVLSERSKDKRSSKIRRRAFKELLAHLIPLMLDCLKSPEGSSSSSSPRDENAS----LGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGLGGEVIVLHYYQQHHQYLLKVAVLETMNRFLTVLRALFRPPQSTRVQKVVAPLLDASEEVLKEKAAAVLGKLSLCGRDTLKWANIAIKVSLESHNLLQDAWPDEIVGQVPSAQVETIMGEHPLLPPIQDTFNKGDVEAYVLSIGRRFPALCKLLATLVTASPPKSQEPERVLRMGEQ---AWAKLEEERAGVKRDDPSPTRR------RASATTAQESATS---TNTSTADGTLSPELAARVSGLLLPSAVTLLEALVASSRLEKAMEDRQGTVCQCMGQAVAQ-TPVQGGVRFAAYRAMAVIIRYIRPDTAAEGLGVPILPLLFNEALLALGNRVNLHALNT 472
BLAST of mRNA_H-paniculata_contig5614.13138.1 vs. uniprot
Match: A0A6H5JJU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU2_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.730e-10 Identity = 90/310 (29.03%), Postives = 133/310 (42.90%), Query Frame = 1
Query: 553 PQSTNVQKAVAPLLDAEEDVLRDKAAAVLGQLSLCGKDNLKWVNIAIKVSLEAHNLLHDAWADE------AAGQIPSKRLQTIMGDHPLLPPLQ----QTFEPGDAEAHVRAVGRRFPALCKLLATLISASPPKSHDADTAHGEPQQEQGASSKVVDQRPLLVSLTISLVQRVLRM--------GPQASSRCYNEVADDGRGRGAAASPGTLSPALAAGVTTQLLPPAVTLLEALVASSKLEDVMKDQQEAVCECMGQAVAQQMPVQGGVRAAVYRVMAFVIRYLQPQYAAAALGVPVLPLLFNEALLAL 1428
P V+ A AP L DV+RD+AAAVL L LCG+ W A +V+LEAH LLH AW D + PS+ + LLPPL + F G + V RRF LC +L +++ ++G P + V L ++LV+RV RM GPQ + VA GA + + P+L + LL AL A+++ V+++ + C + Q + + G +RAA YR ++ + L + AA L P LP + E A+
Sbjct: 281 PHVKKVEAATAPWLQGPSDVIRDRAAAVLASLPLCGEAEA-WTQAAGRVTLEAHGLLHAAWPDNDVDMGTSDSMSPSQLDAALSSGAGLLPPLGGRAGEGFS-GPQQVLASLVSRRFKGLCHVLELMLTGD---------SNGRPVA-------------VPVGLILALVERVQRMVSSVVKGQGPQV----FIPVAQGALSHGALS---VIRPSLGLAASR--------LLHAL-ATTEASTVLRNARR-FCRALVQGMGKPSDA-GSLRAAGYRAVSRAVLQLG-EGAAPYLATPALPAILAEVRAAV 547
BLAST of mRNA_H-paniculata_contig5614.13138.1 vs. uniprot
Match: D8LP19_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP19_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 2.900e-7 Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 1
Query: 553 PQSTNVQKAVAPLLDAEEDVLRDKAAAVLGQLSLCGKDNLKWVNIAIKVSLEAHNLLHDAWADE-----AAGQIPSKRLQTIMGDHP-LLPPL 813
P V+ A AP L DV+RD+AAAVL L LCG+ W A +V+LEAH LLH AW D + + + +L +G LLPPL
Sbjct: 202 PHVKKVEAATAPWLQGPSDVIRDRAAAVLASLPLCGEAEA-WTQAAGRVALEAHGLLHAAWPDNDVDMGTSDSMSASQLDAALGSGAGLLPPL 293 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5614.13138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5614.13138.1 >prot_H-paniculata_contig5614.13138.1 ID=prot_H-paniculata_contig5614.13138.1|Name=mRNA_H-paniculata_contig5614.13138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=497bp PVNPYRQIKVHVLITKLEDNSGEHTEKNFELVADAILHHLGPSELPTTRAback to top mRNA from alignment at H-paniculata_contig5614:7032..13247+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5614.13138.1 ID=mRNA_H-paniculata_contig5614.13138.1|Name=mRNA_H-paniculata_contig5614.13138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6216bp|location=Sequence derived from alignment at H-paniculata_contig5614:7032..13247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5614:7032..13247+ >mRNA_H-paniculata_contig5614.13138.1 ID=mRNA_H-paniculata_contig5614.13138.1|Name=mRNA_H-paniculata_contig5614.13138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2982bp|location=Sequence derived from alignment at H-paniculata_contig5614:7032..13247+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |