prot_H-paniculata_contig56043.13125.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig56043.13125.1
Unique Nameprot_H-paniculata_contig56043.13125.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length207
Homology
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 160 bits (406), Expect = 5.890e-42
Identity = 90/217 (41.47%), Postives = 121/217 (55.76%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGRREKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAA---------------GNSSEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            RL++SLYGLKQ+ R WNK+LD  L G+G +R  +++CLY  RD+ G+   LVV   D L+ A  R  +DE K  ++ +F+M DLG  S +LGI +RRDRP   I +SQ  YI  VL RYG  +C+   TP  A  K +A               G S  Y  ++GS+MY   GTRPD AY+V    R   +P R  +   KR  RYL    D+ + F
Sbjct: 1125 RLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLVVYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRF 1341          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 157 bits (396), Expect = 6.280e-41
Identity = 84/207 (40.58%), Postives = 123/207 (59.42%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNS----SEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            RLRKSLYGLKQS RNW+K +D +  G GL  S  D CLY    + GE  L++V+Y D+L+I    R   D+FK +IS+ F M+DL  L  +LG+ ++R+R N T+ ISQ  YI  +L ++G  +C+ V TP +    K  G      +EY  +VGSL+Y +  TRPD A+ V    + ++   +E +   KR+ RYL    D+G+ +
Sbjct:  340 RLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNKEHWIAAKRVLRYLKGTRDVGLKY 545          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 157 bits (398), Expect = 6.520e-41
Identity = 86/207 (41.55%), Postives = 122/207 (58.94%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSS----EYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            RLRKSLYGLKQS RNW+K +D +  G G   S+ D CLY    + GE  L++V+Y D+L+I    RE VD+FK  IS+ F M+DL  L  +LG+ ++R+R    + ISQ +YI  VL ++G  +CR V TP +    K  G  +    EY  +VGSL+Y +  TRPD A+ V    + ++    E +   KR+ RYL    D+GI +
Sbjct:  349 RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPVLTPMEGTLTKMDGKDAKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRY 554          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A2G2W4T7_CAPBA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2W4T7_CAPBA)

HSP 1 Score: 157 bits (398), Expect = 6.990e-41
Identity = 83/215 (38.60%), Postives = 126/215 (58.60%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSSE------------YRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            RL+KSLYGLKQS R W K  D F+ G G  RS+ D+C+YF + + G   + +++Y D+++IA R +  VD+ K  ++  F M+DLG   ++LG+E+ RDR  G + +SQ  Y+ ++L R+G  +C+ V TP  A +K ++    +            Y   VGSLMY    TRPD AY V   +R M +P ++ + + K I RYL   PD+G+ F
Sbjct:  616 RLKKSLYGLKQSPRQWYKRFDSFMTGHGYSRSSYDNCVYFQKLSDGSL-VYLLLYVDDMLIAARDKTLVDKLKVQLNSEFDMKDLGPAKKILGMEINRDRQAGKLFLSQKKYVMKMLDRFGMRDCKAVNTPLAAHFKLSSDQCPQSEEEQRRMSHVPYSNAVGSLMYAMVCTRPDLAYAVSVVSRFMHNPGKQHWESVKWILRYLKGSPDIGLVF 829          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A146H3U8_MYCCL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H3U8_MYCCL)

HSP 1 Score: 153 bits (386), Expect = 1.800e-40
Identity = 86/215 (40.00%), Postives = 126/215 (58.60%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVI-AGRREKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTP----AKAKYKK--------AAGNSSEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            RL+KSLYGL QS R WN+  D  +  IGL ++  D+C+Y+ R+  GE  + V V+ D+L+I A  +++ +  K  +   F M+DLG   +++GIEV RDR  GT+T+SQ  YI  +L RYGF +  GV TP    A  K ++        A    +EY+ M+G LMY +  TRPD AY V + ++   +P  E  + CKR+F YLS   D G+ +
Sbjct:  118 RLKKSLYGLHQSGREWNREFDQKVQTIGLTKTAADNCVYY-RERDGE-RVWVTVWVDDLIILATSKDEGERVKKELDTLFEMKDLGEPRKIIGIEVTRDRSAGTVTLSQRHYIESLLDRYGFSDLNGVSTPLVPDANTKMRQLPKDAPPTAPSARAEYQSMIGGLMYAAICTRPDIAYAVGRLSQFAANPGPEHQAACKRVFHYLSGTRDYGLVY 330          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A178VBX6_ARATH (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178VBX6_ARATH)

HSP 1 Score: 150 bits (379), Expect = 3.200e-40
Identity = 77/204 (37.75%), Postives = 120/204 (58.82%), Query Frame = 0
Query:    7 LRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAG-RREKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSSEYR------------GMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYL 197
            L++SLYGLKQS R WN   D+F+ GI   RS  DSC+YF + NG +T + +++Y D+++IA   + +V+E K  +S+ F M+DLG   ++LG+E+ RDR  G +T+SQ  Y+++VL+ +  D  + V TP    +K  A    EY               +GS+MY+  GTRPD AY +   +R M  P ++ +   K + RY+
Sbjct:   47 LKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNG-DTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRGAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYM 249          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: H3H910_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H910_PHYRM)

HSP 1 Score: 147 bits (371), Expect = 3.530e-40
Identity = 75/215 (34.88%), Postives = 118/215 (54.88%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGRREKV-DEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSSE------------YRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            +L++SLYGLKQS R WN+++DDF++ +G  +  +D C+Y  RD  G+  + V +Y D+LV+A   +++ +  KH + KRF M DLG L   LG+E++ D  +G +T+ Q  +++ +L ++G  + + V TP     K       +            YR  VG+LMY    TRPD A  V   ++   DPC   +   KR+ RYL   P  G+ F
Sbjct:   18 KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALCKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEDGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEF 230          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 3.690e-40
Identity = 82/207 (39.61%), Postives = 121/207 (58.45%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNS----SEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            RLRKSLYGLKQS RNW+K +D +  G G   S+ D CLY    + GE  L++V+Y D+L+I    RE V +FKH IS+ F M+DL  L  +LG+ ++RDR    + ISQ +YI  +L ++   +C+ V TP +    K  G      +EY  +VGSL+Y +  TRPD A+ V    + ++    E +   KR+ RYL    ++G+ +
Sbjct:  120 RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEGTLTKMDGKDVKPDNEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTREVGLKY 325          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 153 bits (387), Expect = 5.530e-40
Identity = 79/197 (40.10%), Postives = 126/197 (63.96%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGRR-EKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSS----EYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYL 197
            RL+KSLYGLKQS RNWN+ LD++L+  G  R+  D C+Y  +   GE  ++VV++ D+L+IA    +K+ +FK N+  +FRM+DLG +S  LGI  ++   NG I ++Q  YI+++L R+G  +C+   TP + +++  + +       YR +VGSL+Y  T TRPD ++VV + ++++  P  ED  T K + RYL
Sbjct:  315 RLKKSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFEGMSDSEQVDPRRYREIVGSLIYLMTCTRPDISWVVSKLSQKLSCPRLEDLVTAKHVLRYL 507          
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.060e-39
Identity = 85/207 (41.06%), Postives = 120/207 (57.97%), Query Frame = 0
Query:    6 RLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNGGETNLLVVVYFDNLVIAGR-REKVDEFKHNISKRFRMEDLGSLSRVLGIEVRRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNS----SEYRGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTVPDLGITF 207
            RLRKSLYGLKQS RNW+K +D +  G G   S+ D CLY    + GE  L+VV+Y D+L+IA   R   D+FK  IS+ F M+DL  L  +LG+ ++R+R    + ISQ  YI  +L ++G  +C+ V TP +    K  G      SEY  +VGSL+Y +  TRPD A+ V    + ++    E +   KR+ RYL    D+GI +
Sbjct:  638 RLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEM-LVVVLYVDDLIIASNSRTMADKFKQAISREFSMKDLKELDWILGMAIKRNREKRIMEISQTGYIDMMLNKFGMTDCKPVLTPMEGTLTKMDGKDVKPDSEYMKLVGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRY 843          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56043.13125.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VT18_TRAPU5.890e-4241.47Retrovirus-related Pol polyprotein from transposon... [more]
W7TJ26_9STRA6.280e-4140.58Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7TIM1_9STRA6.520e-4141.55Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A2G2W4T7_CAPBA6.990e-4138.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A146H3U8_MYCCL1.800e-4040.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A178VBX6_ARATH3.200e-4037.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H910_PHYRM3.530e-4034.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7TCB8_9STRA3.690e-4039.61Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
A0A6S7HLY2_PARCT5.530e-4040.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
W7T174_9STRA1.060e-3941.06Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 6..136
e-value: 2.5E-28
score: 99.4
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 7..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56043contigH-paniculata_contig56043:91..796 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56043.13125.1mRNA_H-paniculata_contig56043.13125.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig56043 91..808 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig56043.13125.1 ID=prot_H-paniculata_contig56043.13125.1|Name=mRNA_H-paniculata_contig56043.13125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MPFLRRLRKSLYGLKQSCRNWNKSLDDFLVGIGLDRSTTDSCLYFSRDNG
GETNLLVVVYFDNLVIAGRREKVDEFKHNISKRFRMEDLGSLSRVLGIEV
RRDRPNGTITISQGSYIREVLKRYGFDECRGVPTPAKAKYKKAAGNSSEY
RGMVGSLMYTSTGTRPDRAYVVHQAARRMEDPCREDFSTCKRIFRYLSTV
PDLGITF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2