mRNA_H-paniculata_contig55817.13091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE) HSP 1 Score: 171 bits (433), Expect = 4.420e-46 Identity = 96/184 (52.17%), Postives = 120/184 (65.22%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYN--------AIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG DCG T+APVCRLQSIRM+ IA ++NLE Q+D +TAFL AD E V+V+ P E ++G +VM+L SL GL Q PSN+ IV LTLYVDD+LL + + I +KL RF MTDMG+V LVLGM + RD +G LTIS + YTKS+LER+ M+ P TP
Sbjct: 905 GWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIVYLTLYVDDLLLASNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSECKPTSTP 1088
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 162 bits (411), Expect = 3.100e-43 Identity = 94/204 (46.08%), Postives = 121/204 (59.31%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG DCG T+APVCR QSIRM+ IA ++NLE Q+D +TAFL AD E V+V+ P E ++G +VM+L SL GL Q PSN+ + V LTLYVDD+LL G + + + I +KL RF MTDMG+V LVLGM + RD +G LTIS + Y+KS+LER+ M+ P TP
Sbjct: 528 GWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTP 731
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 160 bits (405), Expect = 2.640e-42 Identity = 93/204 (45.59%), Postives = 116/204 (56.86%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG DCG T+APVCR+QS+RMV I E+NL Q+D +TAFL AD EEV+V+ P E ++G MVM+L SL GL Q P N+ A + LTLYVDD+LL G D + + KL RF MTD+G+ SLVLGM + RD LTIS + Y KS+LER+ M+ S P TP
Sbjct: 1385 GWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 1588
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 159 bits (401), Expect = 9.080e-42 Identity = 92/204 (45.10%), Postives = 116/204 (56.86%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG DCG T+APVCR+QS+RMV I E+NL Q+D +TAFL AD EEV+V+ P E ++G MVM+L SL GL Q P N+ A + LTLYVDD+LL G D + + KL RF MTD+G+ SLVLGM + RD LTIS + Y KS+LER+ ++ S P TP
Sbjct: 1220 GWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTP 1423
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE) HSP 1 Score: 137 bits (346), Expect = 1.510e-35 Identity = 83/176 (47.16%), Postives = 109/176 (61.93%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYNAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG DCG T+APVCRLQSIRM+ I ++NLE Q+D +TAF AD E V+V+ P E ++G +VM+L SL GL Q SN+ + D L+ +++ V R + + F MTDMG+V LVLGM + RDH +G LTIS YTKS+LER+ M+ P TP
Sbjct: 119 GWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFVERPPGFEVKDKDGGDLVMQLQKSLYGLAQIASNW-------FHTIDPFLV-ENISV-PRKSDTCVYLFKMTDMGEVKLVLGMEIKRDHNQGTLTISQKAYTKSILERFGMSECKPTSTP 285
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE) HSP 1 Score: 132 bits (331), Expect = 6.770e-33 Identity = 80/184 (43.48%), Postives = 111/184 (60.33%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHE-NGVPMVMRLLNSLCGLRQ------RPSNY-----NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIP 516
G+ Q PG+D G ++APVCR+ IRM AI +N +QLD AFLNA D +VYV+ AP + G PMV +L SL GL Q P Y N IV+LT+YVDD+L+ G D +++ + ++L RF MTDMG+V +LG+ V RD+ +G L IS ++Y +LLER+ M + P
Sbjct: 47 GYRQEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP 230
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.010e-32 Identity = 85/204 (41.67%), Postives = 108/204 (52.94%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG D G TFAPVCRLQSIRM+ A ++NLE Q+D +TAFL AD E V+V+ P E +++G +VM+L SL GL Q PSN+ + V LTLYVDD+LL G + + I +KL RF+MTDMG V LVLGM + RD + ER+ M+ P TP
Sbjct: 119 GWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDMGGVKLVLGMEIKRDRNQ---------------ERFGMSECKPTSTP 307
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.250e-32 Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYNAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG CG T+APVCRLQSIRM+ IA ++NLE Q+D TAFL D E V+V+ P E +++G +VM+L SL GL Q PSN+ + D L+ ++ + + + F MT+MG+V LVLGM + +D +G LTIS + Y+KS+LER+ M+ P TP
Sbjct: 704 GWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFVEQPPGFEVKNKDGGDLVMQLQESLYGLAQSPSNW-------FHTIDPFLV--EIGFVSLKSDTCVYLFKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTP 870
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE) HSP 1 Score: 131 bits (329), Expect = 3.840e-32 Identity = 80/176 (45.45%), Postives = 106/176 (60.23%), Query Frame = 1
Query: 1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYNAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
GW QVPG DCG T+APVCRLQSIRM+ IA ++NLE Q+D +TAFL AD E+++V+ E +G +VM+L SL GL Q P N+ + D L+ +G + K F MTDMG+V LVLGM R+ +G LTIS + Y+KS+LER+ M+ P TP
Sbjct: 548 GWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRNW-------FHTIDPFLVE-----IGFVPLK----FKMTDMGEVKLVLGMETKRERNQGTLTISQEAYSKSILERFGMSECKPTSTP 707
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE) HSP 1 Score: 131 bits (329), Expect = 3.970e-32 Identity = 81/202 (40.10%), Postives = 112/202 (55.45%), Query Frame = 1
Query: 10 QVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHE-NGVPMVMRLLNSLCGLRQRPSNYN----------------------------AIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
Q PG+D G ++APVCR+ SIRM AI N +QLD AFLNA D +VYV+ AP + G PMV +L SL GL Q P+ +N IV+LT+YVDD+L+ G D +++ + ++L RF MTDMG+V +LG+ V RD+ +G L IS ++Y +LLER+ M + P TP
Sbjct: 639 QEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 840 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig55817.13091.1 >prot_H-paniculata_contig55817.13091.1 ID=prot_H-paniculata_contig55817.13091.1|Name=mRNA_H-paniculata_contig55817.13091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp MVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVback to top mRNA from alignment at H-paniculata_contig55817:484..1089- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig55817.13091.1 ID=mRNA_H-paniculata_contig55817.13091.1|Name=mRNA_H-paniculata_contig55817.13091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig55817:484..1089- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig55817:484..1089- >mRNA_H-paniculata_contig55817.13091.1 ID=mRNA_H-paniculata_contig55817.13091.1|Name=mRNA_H-paniculata_contig55817.13091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig55817:484..1089- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |