mRNA_H-paniculata_contig55817.13091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55817.13091.1
Unique NamemRNA_H-paniculata_contig55817.13091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 4.420e-46
Identity = 96/184 (52.17%), Postives = 120/184 (65.22%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYN--------AIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG DCG T+APVCRLQSIRM+  IA ++NLE  Q+D +TAFL AD  E V+V+  P  E   ++G  +VM+L  SL GL Q PSN+          IV LTLYVDD+LL   +   +  I +KL  RF MTDMG+V LVLGM + RD  +G LTIS + YTKS+LER+ M+   P  TP
Sbjct:  905 GWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIVYLTLYVDDLLLASNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSECKPTSTP 1088          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.100e-43
Identity = 94/204 (46.08%), Postives = 121/204 (59.31%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG DCG T+APVCR QSIRM+  IA ++NLE  Q+D +TAFL AD  E V+V+  P  E   ++G  +VM+L  SL GL Q PSN+                            +  V LTLYVDD+LL G + + +  I +KL  RF MTDMG+V LVLGM + RD  +G LTIS + Y+KS+LER+ M+   P  TP
Sbjct:  528 GWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTP 731          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 2.640e-42
Identity = 93/204 (45.59%), Postives = 116/204 (56.86%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG DCG T+APVCR+QS+RMV  I  E+NL   Q+D +TAFL AD  EEV+V+  P  E   ++G  MVM+L  SL GL Q P N+                             A + LTLYVDD+LL G D   +  +  KL  RF MTD+G+ SLVLGM + RD     LTIS + Y KS+LER+ M+ S P  TP
Sbjct: 1385 GWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 1588          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 9.080e-42
Identity = 92/204 (45.10%), Postives = 116/204 (56.86%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG DCG T+APVCR+QS+RMV  I  E+NL   Q+D +TAFL AD  EEV+V+  P  E   ++G  MVM+L  SL GL Q P N+                             A + LTLYVDD+LL G D   +  +  KL  RF MTD+G+ SLVLGM + RD     LTIS + Y KS+LER+ ++ S P  TP
Sbjct: 1220 GWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTP 1423          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 1.510e-35
Identity = 83/176 (47.16%), Postives = 109/176 (61.93%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYNAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG DCG T+APVCRLQSIRM+  I  ++NLE  Q+D +TAF  AD  E V+V+  P  E   ++G  +VM+L  SL GL Q  SN+        +  D  L+ +++ V  R +   +  F MTDMG+V LVLGM + RDH +G LTIS   YTKS+LER+ M+   P  TP
Sbjct:  119 GWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFVERPPGFEVKDKDGGDLVMQLQKSLYGLAQIASNW-------FHTIDPFLV-ENISV-PRKSDTCVYLFKMTDMGEVKLVLGMEIKRDHNQGTLTISQKAYTKSILERFGMSECKPTSTP 285          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 6.770e-33
Identity = 80/184 (43.48%), Postives = 111/184 (60.33%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHE-NGVPMVMRLLNSLCGLRQ------RPSNY-----NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIP 516
            G+ Q PG+D G ++APVCR+  IRM  AI   +N   +QLD   AFLNA  D +VYV+ AP     +   G PMV +L  SL GL Q       P  Y     N IV+LT+YVDD+L+ G D +++ +  ++L  RF MTDMG+V  +LG+ V RD+ +G L IS ++Y  +LLER+ M  + P
Sbjct:   47 GYRQEPGQDYGRSYAPVCRIGGIRMTCAIGCHHNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANP 230          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.010e-32
Identity = 85/204 (41.67%), Postives = 108/204 (52.94%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNY----------------------------NAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG D G TFAPVCRLQSIRM+   A ++NLE  Q+D +TAFL AD  E V+V+  P  E  +++G  +VM+L  SL GL Q PSN+                            +  V LTLYVDD+LL G +   +  I +KL  RF+MTDMG V LVLGM + RD  +               ER+ M+   P  TP
Sbjct:  119 GWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDMGGVKLVLGMEIKRDRNQ---------------ERFGMSECKPTSTP 307          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.250e-32
Identity = 78/176 (44.32%), Postives = 108/176 (61.36%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYNAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG  CG T+APVCRLQSIRM+  IA ++NLE  Q+D  TAFL  D  E V+V+  P  E  +++G  +VM+L  SL GL Q PSN+        +  D  L+  ++  +   +   +  F MT+MG+V LVLGM + +D  +G LTIS + Y+KS+LER+ M+   P  TP
Sbjct:  704 GWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFVEQPPGFEVKNKDGGDLVMQLQESLYGLAQSPSNW-------FHTIDPFLV--EIGFVSLKSDTCVYLFKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTP 870          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5KER0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.840e-32
Identity = 80/176 (45.45%), Postives = 106/176 (60.23%), Query Frame = 1
Query:    1 GWGQVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMVMRLLNSLCGLRQRPSNYNAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            GW QVPG DCG T+APVCRLQSIRM+  IA ++NLE  Q+D +TAFL AD  E+++V+     E    +G  +VM+L  SL GL Q P N+        +  D  L+      +G +  K    F MTDMG+V LVLGM   R+  +G LTIS + Y+KS+LER+ M+   P  TP
Sbjct:  548 GWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILEKLFVEQPLGFEVRDNDGGDLVMQLQKSLYGLAQSPRNW-------FHTIDPFLVE-----IGFVPLK----FKMTDMGEVKLVLGMETKRERNQGTLTISQEAYSKSILERFGMSECKPTSTP 707          
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.970e-32
Identity = 81/202 (40.10%), Postives = 112/202 (55.45%), Query Frame = 1
Query:   10 QVPGRDCGGTFAPVCRLQSIRMVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHE-NGVPMVMRLLNSLCGLRQRPSNYN----------------------------AIVVLTLYVDDVLLLGKDLKVLGRINQKLMSRFSMTDMGDVSLVLGMGVTRDHTKGALTIS*DNYTKSLLERYRMTSSIPAYTP 528
            Q PG+D G ++APVCR+ SIRM  AI    N   +QLD   AFLNA  D +VYV+ AP     +   G PMV +L  SL GL Q P+ +N                             IV+LT+YVDD+L+ G D +++ +  ++L  RF MTDMG+V  +LG+ V RD+ +G L IS ++Y  +LLER+ M  + P  TP
Sbjct:  639 QEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESITAFGWKRTQSDPCVYAYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 840          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55817.13091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN1_9PHAE4.420e-4652.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE3.100e-4346.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J842_9PHAE2.640e-4245.59Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE9.080e-4245.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN4_9PHAE1.510e-3547.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDK0_9PHAE6.770e-3343.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KWT4_9PHAE1.010e-3241.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE2.250e-3244.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KER0_9PHAE3.840e-3245.45CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1R7_9PHAE3.970e-3240.10Integrase catalytic domain-containing protein (Fra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55817contigH-paniculata_contig55817:484..1089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score77.0
Seed ortholog evalue7.1e-12
Seed eggNOG ortholog7425.NV17641-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3E4E9@33213,3SZU9@50557,42CQ9@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size528
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55817.13091.1prot_H-paniculata_contig55817.13091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55817 550..1017 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930589.647796-UTR-H-paniculata_contig55817:483..5491622930589.647796-UTR-H-paniculata_contig55817:483..549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55817 484..549 -
1691481361.6282675-UTR-H-paniculata_contig55817:483..5491691481361.6282675-UTR-H-paniculata_contig55817:483..549Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55817 484..549 -
1622930589.6987882-UTR-H-paniculata_contig55817:1017..10891622930589.6987882-UTR-H-paniculata_contig55817:1017..1089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55817 1018..1089 -
1691481361.6570668-UTR-H-paniculata_contig55817:1017..10891691481361.6570668-UTR-H-paniculata_contig55817:1017..1089Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55817 1018..1089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930589.6647573-CDS-H-paniculata_contig55817:549..7391622930589.6647573-CDS-H-paniculata_contig55817:549..739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55817 550..739 -
1691481361.639764-CDS-H-paniculata_contig55817:549..7391691481361.639764-CDS-H-paniculata_contig55817:549..739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55817 550..739 -
1622930589.6818848-CDS-H-paniculata_contig55817:817..10171622930589.6818848-CDS-H-paniculata_contig55817:817..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55817 818..1017 -
1691481361.6476014-CDS-H-paniculata_contig55817:817..10171691481361.6476014-CDS-H-paniculata_contig55817:817..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55817 818..1017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55817.13091.1

>prot_H-paniculata_contig55817.13091.1 ID=prot_H-paniculata_contig55817.13091.1|Name=mRNA_H-paniculata_contig55817.13091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MVLAIAAEYNLECWQLDHNTAFLNADDDEEVYVKIAPECEDLHENGVPMV
MRLLNSLCGLRQRPSNYNAIVVLTLYVDDVLLLGKDLKVLGRINQKLMSR
FSMTDMGDVSLVLGMGVTRDHTKGALTIS*
back to top

mRNA from alignment at H-paniculata_contig55817:484..1089-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55817.13091.1 ID=mRNA_H-paniculata_contig55817.13091.1|Name=mRNA_H-paniculata_contig55817.13091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig55817:484..1089- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGGGGTCAAGTGCCCGGCCGTGATTGCGGCGGGACGTTCGCTCCGGT CTGCAGGCTCCAGAGCATCCGCATGGTGCTGGCGATAGCGGCGGAGTACA ATCTGGAGTGCTGGCAACTCGACCACAACACCGCGTTTCTGAACGCTGAC GACGACGAGGAGGTGTACGTCAAGATAGCACCAGAGTGCGAGGACTTGCA CGAAAACGGAGTTCCGATGGTAATGAGGCTTCTGAATAGCCTCTGTGGTC TTCGCCAGCGCCCATCGAACTAGTGGGGGACTATCGGTAAACATCTAGCA GAGATCGGTTTCAAAAGCCTCAAGTCAGACCCGTGCGTCTCTGCAGAAAG CAACGCCATCGTCGTTTTGACCCTGTATGTCGACGACGTTCTTCTTCTCG GAAAAGACCTCAAGGTGCTAGGGCGGATCAATCAGAAGCTGATGAGCCGT TTCTCAATGACGGACATGGGAGACGTGTCGCTAGTGCTCGGGATGGGCGT TACTAGGGATCACACGAAAGGGGCGTTGACCATCAGCTAGGACAACTACA CAAAGTCGTTGTTGGAGCGGTATCGTATGACAAGCTCTATTCCTGCGTAC ACGCCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig55817:484..1089-

>mRNA_H-paniculata_contig55817.13091.1 ID=mRNA_H-paniculata_contig55817.13091.1|Name=mRNA_H-paniculata_contig55817.13091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig55817:484..1089- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTGGCGATAGCGGCGGAGTACAATCTGGAGTGCTGGCAACTCGA
CCACAACACCGCGTTTCTGAACGCTGACGACGACGAGGAGGTGTACGTCA
AGATAGCACCAGAGTGCGAGGACTTGCACGAAAACGGAGTTCCGATGGTA
ATGAGGCTTCTGAATAGCCTCTGTGGTCTTCGCCAGCGCCCATCGAACTA
ATGGTGCTGGCGATAGCGGCGGAGTACAATCTGGAGTGCTGGCAACTCGA
CCACAACACCGCGTTTCTGAACGCTGACGACGACGAGGAGGTGTACGTCA
AGATAGCACCAGAGTGCGAGGACTTGCACGAAAACGGAGTTCCGATGGTA
ATGAGGCTTCTGAATAGCCTCTGTGGTCTTCGCCAGCGCCCATCGAACTA
CAACGCCATCGTCGTTTTGACCCTGTATGTCGACGACGTTCTTCTTCTCG
GAAAAGACCTCAAGGTGCTAGGGCGGATCAATCAGAAGCTGATGAGCCGT
TTCTCAATGACGGACATGGGAGACGTGTCGCTAGTGCTCGGGATGGGCGT
TACTAGGGATCACACGAAAGGGGCGTTGACCATCAGCTAGCAACGCCATC
GTCGTTTTGACCCTGTATGTCGACGACGTTCTTCTTCTCGGAAAAGACCT
CAAGGTGCTAGGGCGGATCAATCAGAAGCTGATGAGCCGTTTCTCAATGA
CGGACATGGGAGACGTGTCGCTAGTGCTCGGGATGGGCGTTACTAGGGAT
CACACGAAAGGGGCGTTGACCATCAGCTAG
back to top