mRNA_H-paniculata_contig5577.13084.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5577.13084.1
Unique NamemRNA_H-paniculata_contig5577.13084.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: D8LE03_ECTSI (PUA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE03_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 1.000e-94
Identity = 154/180 (85.56%), Postives = 168/180 (93.33%), Query Frame = 1 
Query:    1 YSRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKELE 540
            + RFS++DVSSSSQ+KSSVQRG RAKL+EQFP  E YLEDILPKKGNVT+AKC+DR+SLICCDGVPLFFQQRDG IFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMC GFTSKGGR++TPLEAG+ VCILAEGKKVALAVG T MSTADI+SVNKG GV+NLHYLGDGLF TKEL+
Sbjct:    2 FKRFSKDDVSSSSQVKSSVQRGFRAKLLEQFPNSEPYLEDILPKKGNVTIAKCKDRVSLICCDGVPLFFQQRDGHIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCQGFTSKGGRIDTPLEAGAAVCILAEGKKVALAVGQTTMSTADIQSVNKGIGVDNLHYLGDGLFGTKELD 181
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A835Z9W5_9STRA (PUA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W5_9STRA)

HSP 1 Score: 242 bits (617), Expect = 7.630e-70
Identity = 118/181 (65.19%), Postives = 150/181 (82.87%), Query Frame = 1 
Query:    1 YSRFSQ-EDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKELE 540
            + RF+Q E+VSS+SQIKSSVQR +RAKLIEQFP  E  L+DILPKKGN+T+AKC +++SLIC D   +FFQ+RDG IFPTLR++H+YPN MP M+VDKGAI F++NG+NIMC GFTS GGRME  +EAG  VCI+AEGK+ ALA+G+T MST +I+  NKG GV+N+HYLGDGL+   +L+
Sbjct:    2 FKRFTQDENVSSNSQIKSSVQRSMRAKLIEQFPLIEEVLDDILPKKGNITIAKCSNKVSLICRDNKIMFFQERDGPIFPTLRLVHQYPNFMPKMQVDKGAIKFILNGSNIMCPGFTSAGGRMEESIEAGQAVCIMAEGKQHALAIGLTVMSTDEIREQNKGIGVDNMHYLGDGLWGVPDLD 182
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A7S2Y120_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y120_9STRA)

HSP 1 Score: 211 bits (536), Expect = 5.960e-59
Identity = 101/180 (56.11%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:    1 YSRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKELE 540
            + RF+  ++SS+SQ+KSSVQRGIRAK++EQ+P  E  +++ILPKK +  VA+C + + LIC  G PLFFQ RDG  FP LR++H+YP   PTM+VD GAI FVM GANIMC GFTSKGG +    EAG+ V I+AE KK ALAVG+T +ST +I+   +G GV+N+HYL DGL+ T+ ++
Sbjct:    2 FKRFTNSEISSASQVKSSVQRGIRAKIVEQYPALEEEIDEILPKKSDFVVARCPNHVQLICHGGKPLFFQCRDGPFFPCLRLVHQYPGCWPTMQVDLGAIPFVMGGANIMCPGFTSKGGNIPQDYEAGTAVIIMAENKKQALAVGITKLSTEEIRKQKRGIGVDNVHYLNDGLWLTQTID 181
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A9NLI5_PICSI (PUA domain-containing protein n=4 Tax=Pinidae TaxID=3313 RepID=A9NLI5_PICSI)

HSP 1 Score: 204 bits (518), Expect = 1.570e-56
Identity = 98/179 (54.75%), Postives = 134/179 (74.86%), Query Frame = 1 
Query:    1 YSRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKEL 537
            + +FS E++SS +Q+K+SVQR IR  + E++P  E  LED+LPKK  + VAKC++ ++LI  + VPLFF  RDG   PTLR+LH+YPN+M  M+VD+GAI FV+ GANIMC G TS GG ++  + A SPV ++AEGK+ ALA+G T MS  DIK++NKG GV+N+HYL DGL+ T +L
Sbjct:    2 FKKFSSEEISSQNQVKASVQRKIRQSIAEEYPDLEPVLEDLLPKKSPLIVAKCQNHINLILVNNVPLFFNVRDGPYMPTLRLLHQYPNIMKKMQVDRGAIKFVLAGANIMCPGLTSPGGALDDDIPAESPVAVMAEGKENALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKTVQL 180
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A1Y1I3Z2_KLENI (Pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I3Z2_KLENI)

HSP 1 Score: 201 bits (512), Expect = 1.010e-55
Identity = 97/180 (53.89%), Postives = 134/180 (74.44%), Query Frame = 1 
Query:    1 YSRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKELE 540
            + +F+ E+VS  +Q+KSSVQR IR  + +Q+P  E  L+D+LPKK  + VAKC++ ++L+  + VPLFF  RDG   PTLR+LH+YP +M  +RVD+GAI FV++GANIMC G TSKGG +E  ++A  PV I AEGK++ALA+G+T MST DI  +NKG GV+N+HYL DGL+ T  L+
Sbjct:    2 FKKFTHEEVSGQNQVKSSVQRKIRQSIADQYPLLEPVLDDLLPKKEPLIVAKCQNHLNLVVINNVPLFFNIRDGPYMPTLRLLHQYPTVMKRVRVDRGAIKFVLSGANIMCPGLTSKGGALEDEVDAEQPVAIHAEGKELALAIGMTKMSTGDIAKINKGIGVDNIHYLNDGLWKTLHLD 181
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A251KDD0_MANES (PUA domain-containing protein n=8 Tax=rosids TaxID=71275 RepID=A0A251KDD0_MANES)

HSP 1 Score: 201 bits (511), Expect = 1.370e-55
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = 1 
Query:    1 YSRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKELE 540
            + +FS EDVSS +Q+K+SVQR IR  + +++P  E  L+D+LPKK  + VAKC++ ++L+  + VPLFF  RDG   PTLR+LH+YPN+M  ++VD+GAI FV+ GANIMC G TS GG ++  +EA +PV I+AEGK+ ALA+G T MS  DIK++NKG GV+N+HYL DGL+  + L+
Sbjct:    2 FKKFSYEDVSSQNQVKASVQRKIRQSIADEYPGLEPVLDDLLPKKSPLIVAKCQNHLNLVMVNSVPLFFNVRDGPYMPTLRLLHQYPNIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGALDEEVEAETPVAIMAEGKEHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLWKMERLD 181
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A2N9GU08_FAGSY (PUA domain-containing protein n=8 Tax=Pentapetalae TaxID=1437201 RepID=A0A2N9GU08_FAGSY)

HSP 1 Score: 200 bits (508), Expect = 3.960e-55
Identity = 97/178 (54.49%), Postives = 133/178 (74.72%), Query Frame = 1 
Query:    4 SRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKEL 537
            SRFS E+VS+ +Q+K+SVQR IR  + E++P  E  L+D+LPKK  + +AKC++ ++L+  + VPLFF  RDG   PTLR+LH+YPN+M   +VD+GAI FV+ GANIMC G TS GG ++  +EA +PV I+AEGK+ ALA+G T MS  DIKS+NKG GV+N+HYL DGL+  + L
Sbjct:    7 SRFSSEEVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKSALVLAKCQNHLNLVLVNDVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGGALDEDVEAETPVAIMAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWKMERL 184
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A4P9XKW5_9FUNG (PUA-like domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XKW5_9FUNG)

HSP 1 Score: 199 bits (507), Expect = 4.430e-55
Identity = 99/176 (56.25%), Postives = 135/176 (76.70%), Query Frame = 1 
Query:    7 RFSQ-EDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTK 531
            RF+Q ED+SSSS +KSSVQRGIR K+ +QF P +  L+D+LPKK ++ + KC + +SL+  +G  LFF QRDG   PTLR++H+YP+ +PT++VD+GAI FV++GANIMC G TS G RM+T L  G+ V ++AEGK+ ALA+G   MSTAD+K +NKG GVE LHYL DGL+ ++
Sbjct:    1 RFNQKEDISSSSLVKSSVQRGIRQKVSDQFVPLQPALDDVLPKKSSMYLHKCHEHISLVAMNGRLLFFNQRDGPYAPTLRLVHEYPDCLPTVQVDRGAIKFVLSGANIMCPGLTSPGARMDTELPEGAIVAVMAEGKEHALAIGRMKMSTADVKKINKGIGVETLHYLNDGLWKSR 176
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A2I0J182_PUNGR (malignant T-cell-amplified sequence 1 homolog n=6 Tax=cellular organisms TaxID=131567 RepID=A0A2I0J182_PUNGR)

HSP 1 Score: 199 bits (507), Expect = 4.730e-55
Identity = 96/179 (53.63%), Postives = 134/179 (74.86%), Query Frame = 1 
Query:    1 YSRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLFFTKEL 537
            + +FS EDVS+ +Q+K+SVQR IR  + E++P  E  LED+LPKK  + VAKC++ ++L+  + VPLFF  RDG   PTLR+LH+YPN+M  ++VD+GAI FV+ GANIMC G TS GG ++  +E+ +PV I+AEGK+ ALA+G T MS  DI++VNKG GV+N+HYL DGL+  + L
Sbjct:    2 FKKFSYEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLEDLLPKKSPLIVAKCQNHLNLVLVNNVPLFFNIRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDDKVESETPVAIMAEGKQHALAIGFTKMSAKDIRAVNKGIGVDNMHYLNDGLWKMERL 180
[Close]
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Match: A0A7J9LKR6_GOSSC (PUA domain-containing protein n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J9LKR6_GOSSC)

HSP 1 Score: 199 bits (507), Expect = 7.470e-55
Identity = 96/174 (55.17%), Postives = 130/174 (74.71%), Query Frame = 1 
Query:    1 YSRFSQEDVSSSSQIKSSVQRGIRAKLIEQFPPCESYLEDILPKKGNVTVAKCRDRMSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNGANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKSVNKGSGVENLHYLGDGLF 522
            + RFS EDVSS +Q+K+SVQR IR  + E++P  E  L+D+LPKK  + V KC++ ++L+  + VPLFF  RDG   PTLR+LH+YPN+M   +VD+GAI FV+ GANIMC G TS GG ++  +EA +PV I+AEGK+ ALA+G T MS  DIK++NKG GV+N+HYL DGL+
Sbjct:   12 FCRFSSEDVSSQNQVKASVQRKIRQSIAEEYPGLEPVLDDLLPKKAPLIVVKCQNHLNLVLVNSVPLFFNIRDGPYMPTLRLLHQYPNIMKKFQVDRGAIKFVLAGANIMCPGLTSPGGALDDEVEAETPVAIMAEGKQHALAIGFTKMSAKDIKAINKGIGVDNMHYLNDGLW 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5577.13084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE03_ECTSI1.000e-9485.56PUA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z9W5_9STRA7.630e-7065.19PUA-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2Y120_9STRA5.960e-5956.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A9NLI5_PICSI1.570e-5654.75PUA domain-containing protein n=4 Tax=Pinidae TaxI... [more]
A0A1Y1I3Z2_KLENI1.010e-5553.89Pseudouridine synthase and archaeosine transglycos... [more]
A0A251KDD0_MANES1.370e-5553.33PUA domain-containing protein n=8 Tax=rosids TaxID... [more]
A0A2N9GU08_FAGSY3.960e-5554.49PUA domain-containing protein n=8 Tax=Pentapetalae... [more]
A0A4P9XKW5_9FUNG4.430e-5556.25PUA-like domain-containing protein (Fragment) n=1 ... [more]
A0A2I0J182_PUNGR4.730e-5553.63malignant T-cell-amplified sequence 1 homolog n=6 ... [more]
A0A7J9LKR6_GOSSC7.470e-5555.17PUA domain-containing protein n=4 Tax=Gossypium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5577contigH-paniculata_contig5577:931..9451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue6.3e-58
Seed eggNOG ortholog2880.D8LE03
Preferred nameMCTS1
KEGG koko:K02883,ko:K07575
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0001731,GO:0002181,GO:0002183,GO:0002188,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0016032,GO:0016043,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0042127,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0075522,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1990904,GO:2000112
EggNOG free text desc.formation of translation preinitiation complex
EggNOG OGsCOG2016@1,KOG2523@2759
Ec32 ortholog descriptionPUA domain
Ec32 orthologEc-05_004570.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons5
Model size4255
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.5807562-UTR-H-paniculata_contig5577:930..46421622930588.5807562-UTR-H-paniculata_contig5577:930..4642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 931..4642 -
1691481361.1002223-UTR-H-paniculata_contig5577:930..46421691481361.1002223-UTR-H-paniculata_contig5577:930..4642Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 931..4642 -
1622930588.669554-UTR-H-paniculata_contig5577:8409..84721622930588.669554-UTR-H-paniculata_contig5577:8409..8472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 8410..8472 -
1691481361.1638255-UTR-H-paniculata_contig5577:8409..84721691481361.1638255-UTR-H-paniculata_contig5577:8409..8472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 8410..8472 -
1622930588.6898196-UTR-H-paniculata_contig5577:9346..94511622930588.6898196-UTR-H-paniculata_contig5577:9346..9451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 9347..9451 -
1691481361.1778789-UTR-H-paniculata_contig5577:9346..94511691481361.1778789-UTR-H-paniculata_contig5577:9346..9451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 9347..9451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.5976949-CDS-H-paniculata_contig5577:4642..47241622930588.5976949-CDS-H-paniculata_contig5577:4642..4724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 4643..4724 -
1691481361.1139677-CDS-H-paniculata_contig5577:4642..47241691481361.1139677-CDS-H-paniculata_contig5577:4642..4724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 4643..4724 -
1622930588.617528-CDS-H-paniculata_contig5577:5880..59481622930588.617528-CDS-H-paniculata_contig5577:5880..5948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 5881..5948 -
1691481361.1287327-CDS-H-paniculata_contig5577:5880..59481691481361.1287327-CDS-H-paniculata_contig5577:5880..5948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 5881..5948 -
1622930588.6360817-CDS-H-paniculata_contig5577:6368..65051622930588.6360817-CDS-H-paniculata_contig5577:6368..6505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 6369..6505 -
1691481361.1368165-CDS-H-paniculata_contig5577:6368..65051691481361.1368165-CDS-H-paniculata_contig5577:6368..6505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 6369..6505 -
1622930588.6527338-CDS-H-paniculata_contig5577:8321..84091622930588.6527338-CDS-H-paniculata_contig5577:8321..8409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 8322..8409 -
1691481361.146071-CDS-H-paniculata_contig5577:8321..84091691481361.146071-CDS-H-paniculata_contig5577:8321..8409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 8322..8409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5577.13084.1prot_H-paniculata_contig5577.13084.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5577 4643..8409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5577.13084.1

>prot_H-paniculata_contig5577.13084.1 ID=prot_H-paniculata_contig5577.13084.1|Name=mRNA_H-paniculata_contig5577.13084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MSLICCDGVPLFFQQRDGIIFPTLRILHKYPNMMPTMRVDKGAISFVMNG
ANIMCAGFTSKGGRMETPLEAGSPVCILAEGKKVALAVGVTAMSTADIKS
VNKGSGVENLHYLGDGLFFTKELE*
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mRNA from alignment at H-paniculata_contig5577:931..9451-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5577.13084.1 ID=mRNA_H-paniculata_contig5577.13084.1|Name=mRNA_H-paniculata_contig5577.13084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8521bp|location=Sequence derived from alignment at H-paniculata_contig5577:931..9451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTCCAGGTTTTCGCAGGAAGATGTGTCTTCTTCCAGTCAGATCAAGTC
CTCTGTGCAGCGGGGAATCCGCGCTAAGCTAATCGAGCAGTTCCCGCCTT
GTGAGGTGAGATGGCGAGTATATCGTATCGTTGTGCCTCGCCCTGCTCCC
TATTTGGACGAGGCTTCCTGTGCATTTATGTGCCGCTAACAGTAGTCGCC
GTTTGTACCGTGGCTTAACAGTACTGACTGCATACCAGTACTGAATATCG
AGAGTCCGAATGGCCAGTGGCTGTGCGTCAGCAGATTTGAAAAAGATGAA
TGTTTTTTGTCACTCACTAATGCGCCAACCAGACTGCCCCCTTCCCTCTG
TCCTTTGTTTAGTTAGAGGCATTCGAGAATGATGCATTCGGCAGAGTAAC
GCAATTACACAAGCACACAAAAGACCCAATCCTTTTGTTTCAACTGTATC
CGTCTTTTCGTCTTTTCGGTAGACCGACCATGTTTGGGTATTTATTGAAG
GTCGTCAAAGCACAGTTGACCTCTCTTTGAGGAAACACTGGTGTGCATCC
CGAAAAATGTCTGCCTTACCGCGGGAATGTTTCAAGATTCCAGCAACAGT
AGTGAGAAGGGGCTATTTTTGCCCGGAAACCGGGATTTTTCATGGAGATT
GTGTATGCGTTTTTGCACACGCTACATTTTACCGCCATATCCTACTGAAC
CTAAAAAAGACAACGCCTCCTCGGTGCGGGGACGACTGTACACCACCACA
CCTTCAGTCGTCGTTGTTTTTCTACGTTTTGATTGAAGCATTTTGTACAC
TCCGCTTTTCTGGTGTACTGGCTCATTAGTGATCGATCCCTGTGATGATT
GTGACTCTATCTATTTTTGTAGAAAAACATATCTGCGCACATCTCAATGC
CCCCCCCCCCCCCCTCCCCCCGGTGCCTTCGGCTCGTCGACAATACAATA
CACTGGACAACCGTGTGTGCCAACGCTAGTCGTACCTTGAGGATATTTTA
CCGAAGAAGGGGAACGTAACCGTGGCCAAGTGCAGGGATCGGATGTCGCT
GATCTGTTGCGATGGGGTGCCACTATTTTTCCAGCAGCGAGATGGGATTA
TCTTCCCTACGCTGAGGATCCTCCACAAATGTGAGCTAGTCTCCGTCTCA
AGTTCATTTCTTGTTGCTTCATTTTCCCGGAGGCCATGAGAAAGTAGAAA
TTGCCATAATGCTCGAGCTTCACAGGTAGTGCCAAAACCTTGACTGATAT
ATACACCAGGCTAACGAGATATGTTTTACCCGTAATATTGTTCTGGCATT
TCTACTGGAACTTCTTGACGTTAACAAATTCCCCAACGTATTTACAACGG
TTGCACCAAGGGTATTGTGTGTGTGTGTGTGTTGTGTGCACGTTTGTGTG
TGTTGTATATATTTTCAGCTCTCGTTGTTCTATTTCTGAATCTCCCGCTC
GTTGTTTCTGTTTGTGGATAATGACCATGTAATCCAGCAGATTGGAGATG
TGGAGCATACCTCCATTTCGTTTCACGGTTATCGTCATATGTTCTATAGT
GGTCAGACAGAAATTTGTGGTTCTTTTTCCAAACCGCATTGTCATAGTTT
AGATGCCGTCCTGCTGGTGAGGCTATCCTTGGCAATTGACGCTCGTGGTT
ATGTCGCTATGTGTAGTTGGTGGTAGATTTCTTGTTCCTGTGTCAAGTGT
GGTACTGGTTGTCTTGTAACTGCTGCGTGTTGTTGCTATTATGCATGTAT
GTATGTGTGTAGATTGCCCCCCCCCCCTCCCTGAGTTCCCTTATTGACCA
AGTAGTAAGGAGATGATCACAGATGCTGGTTGCTAAATGTTCGGTGTAGA
TTCCAAATCTGTCCAAATCTGTAATATTTTCTGAAGAACTCCGATTCTCG
GGGGTGTGCTTCAAATTCCAAACGTTTTGGCTTATACCCTCTGGTTGCAC
CCGATGTTGCCAGCCATGCTGCTTCAGCTTTGTCACGTTTTTCTTCAATG
ATGATGCCGTTTTGTGAAAAATGATGCATACCATATAGAAATGGATATAT
CCAATAGATGTCTTGTGAAGACGAACCCTATTGTCAGCGCCATGGCAGGT
AGGACCCCAGGCCAAATCAAGGTCGTAGGATCGAATCTGACCTCGAACAC
CAAAAAGAAAATTTTGCGAGATAAGCAAAGCCGCAAAACTGGTGGGGGAA
TCGAGCACGACACTTCCGTTAAAATTCCTGAAAATACGATGTGGAGGAAT
ACGACGTAAAGGAAGTTGGCTCACATCCGAGAAGGTGGAAGATTGCAGAC
AAAAAAAGAGAGGAGCCTTCGCCGCCAGCAACTCGAAACGGGATATTCCC
CTAGAAGCCTTTTGCAAGGACAAAAGGCGAAAGAGACTCATCGTGTTTTT
GGCGTTTTCGATCGTGTATTCATGGTCGTGTTATTGAACCCCGGAGTGAC
TTGCGTGCTTTCAAGCGGTAACTGCAGCATGACGTTCTCGTATCTAGAAA
ATATTCTCGGTTTGCACAGTGTTTCCCGTCTCCTAGATGCCAGATATGAC
TATAGTCCGTCAGAAGCTATCCGAAAGGTTGTACAGAGGATGGAGTAAAT
GATGGTGACACATGGGGTGTGATCAGTACGCAGGGAGCTGCCTTTTTTGT
TGGTAGTACTTGGGAATGGCTTTCTCTCTATTCTAGATGGAGTCTTTGAA
TTTGTTACCTTTTGTCTGGCTTGCGCGGTTGCATCACTCTCCTCAACGTC
TTGCTGTTTATGATTCACTGTCTCCTTGGCAGCTCAAACGCAACGGCGTT
TTTTGCTTGTTTACATGTGGTCTTCGCAGCGTGTTTTGTTGAGTACGTGG
GAAGGTACGTGTGCACAATTCAACAAGGAATGCCAGCACAATAAATTGTT
TTCACGAAAACAGGCGTGTGGTTTGTCAACTGTAAATGCGTCGCAGATCC
CAACATGATGCCGACCATGCGAGTCGATAAGGGGGCCATCAGTTTCGTCA
TGAATGGGGCCAACATAATGTGCGCGGGCTTCACGTCCAAGGGGGGGCGT
ATGGAAACACCTTTGGAGGCTGGGAGCCCTGTGGTGAGATATTACTTGAT
TAGTGGCTTGCTAAAAAAAAAAGCAAGAACGACTGAAATATACCCCGCGC
CCTTTTCCCCATACCCCCCTTGTTGCTCGTTCATGCTGGATGATGACGAA
TGTAGGTAGCTCTGAAGTACGAGATATGCAGCCTCAACATGGCAAGTGTA
TACGCATAAACAACGTTGAATATATTAACAGACGAAAAATGTGAGTTATT
TAATGCAAGTTGTGTGTTGCGTTCTTCGTGTTTTATTTTAACGGTACAGA
ATTTGATACGAGCATTATCACTTACACATGCGTGCACATGGAGTTTTCCT
AACTTGCTGTAAAATGCAGTTGTCCTTCCTCCCCTCCCTCCCTCCGCCTG
CCCTATCTGCCTCAACACTCTCTTGATGGCATTCCTGGGTTATGACGTGA
CAGTGTATTCTAGCGGAGGGGAAGAAAGTGGCATTGGCCGTGGGGGTAAC
AGCGATGTCGACAGCAGACATGTGAGTATCATCCGTTCATGTTTGGTAAG
CCCTTCTCATAAATGCGGTGGTGGCCGGAAACGCTTGACCCACGCACAAA
CTGATGTCCAGAGCCTGCTCTTGCAAGACTTGACTATGTACTTGATGGCA
TTGGTAATCATGATCTTTACCTGACGTGGCTTTTGACAGTGTCATTGGCT
GAAAAATCTTGACGCTAGGGCGTGCTCCGTCGCGAGATTGGAGATAATCG
CGAGAGTTAACACTCAAGGCATCGTTGGTATATTCCCGTTGTCAACGGCT
GTATCAGATTACCGAAGATCCCAGCTTGCTGTGCTAGGGTTTTTATTATG
CATCTGAAGTCGATGATCGCGGTACAGCCCCATCGTTGAAAAGCAATGTG
ACTTCTGTGCTCCGGCGGGAACAGCAATGTTGGTTATCACTTTCTTGCCC
CCATTTCAATTTGCCCACTGTTGTTGCTTTCATGTTATCCGCAATCAATA
GTCAGGAATTACATGTTCTAGGATCAATCATGTCTTTGGGATGAAACGTT
TTCAGCTCCAACTTGAGCAATTGTGTCTAATCGCAGAGGCCCTCGTAAGC
TACGTGGAATTTTTCTTCGCTTCAAATAAAGGCTGTCGGACGCGCCCTTC
TTTTATTAAGTTTGATTACGACAAGTAACTGTCGAGATTTTGGGTGCACC
AGGTAGGTTTTCGTCCTCAAGACGATAGCAATCCTTAACTTTCGTTGACA
ATGGTGCCTTTGATATCGCACGCCCTAGTATTAATTTCAAACTCGATTTT
CTCGGCATCAACTGTGTTCATGACACAGGCAGCGGTATCGTTGGAAACGG
TTCGTTGAGATCTTCAGATAGACCTGTTTCGGCAGTGCTGGCTCTTGCTT
CTCGAGAAAATCGGGTTTGGATAATAACATCAAGCGGTGCGACATGAACG
GTATTGCGGTAGCAAAAACTCACGCTTCCTTTATGGGGTAGTCCAGCTAT
AGGCTCCCTTGTCTCTTTGAGTCTCCTCAACCTCTCCATGTCTGCGCCCG
TTCCCCCCCCCCCACCCTCCCCTCCCGCCCTGCGTCGCGTGTCCCGGTGG
ATTCTGGCTGCTTTTGTGTCGTCTTCTCTTGTTTTTTCGTCATGATACTG
TTTGCGTATTGTGCAAAATCACGACAGAAAATCGGTTAACAAAGGGAGTG
GAGTGGAGAACTTGCACTATTTGGGGGACGGCCTGTTTTTCACGAAAGAG
TTAGAGTAGATGGATGGTATTTAATCGTTGAAACTGCATATGAAAAAGTA
ATTGCGGGGATTGCACCTCCCCCCCCCCTCCTACGGGAGTTGATCTTAGT
GCGTCAGGAACGTGCTCTTCACGCGGAGAATATTATTGGAGACATGAGGA
ACATTTCGTGTGTTACTCCGCCTGACCTTGACTGGCGACCTTGGGTGGTG
CTGATATCACATTTTTTCCCACTGGGTATGTCGGACAGCCCGATAAACAA
TATCTTCATTTTGAGCAGCAACCAGTGTTTCAACCTTTCCGACCCACGTG
TCCAACCGTATTCCATTGCTCCGCTGTTTTGATAGCGACGGATACCTGCA
AAGAAGCTCGAAGAGTAAAGGCTTTCTACGCTACCTACATGCGCCTTGAT
TCAGTGGATGGGTGACCATGTATATAAAACAGCATGTGCCTGGCGTGTGC
CGGCGTTTATCAACATGTTATCTGTGCGCAGGGTTGGGACTTGTGTCCTA
TCGAATTACTGTTCTTTGTTAAGTCTGCGCATTTGGCTTTGGACGATAAT
AGCTTTTGATCGTGGCGTCCGATCAAGAAACGGCGTTTTGCATTAGATCC
ATCGTTTTTTTATCTGTAATATGTCTACGAGTACGTTATTTCCAATCTGG
AACGTTCCCAAGCCCAATGCCGAATCCATCAGTACGTTATGAGCAATCCC
AATTTAGGAAAAACAGAAATGCCCACTGAGTTTGCACGGCCACAAATCTC
ATCATTTTTTTTTTGGATTTGATTACTTGATATTTTTCGGTCTCGACTTG
AGTCTGAGTGCAAATAGTTTACCCGTCGGACAGATACGAATACTTGCAAA
TGGTTATGAAAACCCCCCAAAAGTATTCCCCTGAGTTTTAGAATGGTCGG
GTACATGAAAAATGAAGAATACAGTACCCACCCCCGTCCATTCGATTTAC
GAGTATTATAAGCAATCGTGGATGGTCCCGGGTACATAGAAAATACACCA
GCTCATTCTGAAACTCAGGCGAATACTTTCATTTTTTTTGTGAAAAACAT
GTCCAAGTATTCGTATTTCTTCGGCGGGTGAAACACTTTCAATTGTGGCC
AGTTGAAGACCTTTAGTAATCGTCCATGGTTGGGAACTTTTCAGTAGGTT
AACTCAAGTAGTGACTGCTCACAGCTTCGTGATGAACTTGGCCCAGAATT
TCGGAAATTTGAATAACTTGAAAATAATGCACTCATAGAAGTGCGATCAA
AATACACCGATAATTTCAGTGTGAAAATATCCGTTGCTTGATCGCGCATT
TTGATTACAAGTTATTCCCGCCCAAGCTCAACGGAGACTTCAATTATTTG
CTCCCAACTCAGGACTTCAATTATAGCGTACTAATGAACTCGGCGTTGGG
TTTCGGAATCTTTTAGATCGTTGAATACTAATATTCGCAACCTTGTTCTT
GACCTGGATATACAAAGGAGTCCGATGGGAGGAGGTGCTTCTTAACGGGA
CGTCTCTTACAACCTAAGCGACAGAGGGAGTATTTATTGATGACTATTCG
GCAGGTTTATTGGGATTGTGTTGTCTTCCTATCACATGTCATGTAGTTTC
GATCTCCCAAGCCCCCCCCTGGACCCTCAAAATATATCAGCCATCGTATC
GAACGTACATCACGTCTGAGGTCATCCTTTACCCGTGAGACCCAATCACG
CATCAACAACGATTCTTCTGTGAGGGTTTATGTGTTCGTTTGATTCCGTT
TAGACCGTACAACGAAATAGGTGCCTCCAAAACATGAAAACGCAAAGCGG
CGTATACAGGTTAGGAACTGTACGCCATTTCGCCTCTCAAAAACTTGGCG
AAAGCATAGAGGATGGATGTGAGCATGCACACGGTCAAGCAATATAGATG
TCAACGTTGATATATTGAAAGAAAACACGAAACACATCCAGTCATCCTCT
GATGTTACTGTATCCGTATATACAGAGGTTGTGGTGCCCCAAGAGGAGAC
TGCAGTAAAGAATATATTCTATGGAACTCCCCAGTCCTATCCATCTGCCT
CGTTATATCTGTTTGCACACGGCGACATTCTTTGATATCGCACCCCCTCA
TATCATTTTTTCAAACACAATTTTCTCGACAATGGCGGTGCTCATGACAC
CGATAGCGGTATCGTTGGAAAGATCTCGTTGAGATCTTTCGACAGAAGTG
CCGTTTCGGTCGTACAGGCTCTTCTCGAAAATCAGGCTTGAGAAATAAAT
AATATTGGGAGGGGGTGCGATATCAAAGAATATTTCGATAAACTCTGGGC
GACGTTTCTATGAAATGGGGCAGCAAATTATTTTTGTCAGTGCAAAAGTA
AATAGAAAAGGCAGATTAAGGTATACCTTGACCATTTCCAGATAGAACCA
GGCGTAGTGTGAACGAGCCATATAGCGCCGCCCAAATACGTGACTATGTC
CGAAGTGCACGTCAGTATAACCCGAATTTCTATTTTTCCTTAGAGCCTAT
TACAACTGGACGTGGGCAATTATTACCTGAAGCTGACCGAATTATACGTG
AAGTCAGAACCAACAACTTCTGCAACAGTGGCGAGTATCCTCCCTCGGCA
AAATGACCGTTGACAGCTCGTACCATTTGCTCGACTTTGTCAACCAGATC
TCTGACATTCACCCATACACAGCATGTATCCTGCACTATTTGACGGGGTG
TAACCGGGCGGCGGGTGAAGAGCGTAACGAAATTGATGCATGCATAAACA
TGACTGATGACACAGACATGATACATATACAGGAGACAGACGAGTGATCG
TTTCGACTCTGGATGTAGTGTTGTAGCGTTTGTTTTTGACTGACTGACGG
TGGGCTAGTGTTGGATACACAACATGCACTAATATCCCTGTCGCGGGGTG
ATTTATGTGGCTGTTTCGTAAAGGCGAACAGTTTTTGTACATTAACTAGT
AGTCCAGGATACATGCCGCACGTGGATGTGTGTCGGAGATCAGATGATCG
ACTCGAGCAGGTTGACGAAGAGTCAACCAACTGCCATCGGCCATTTTGCC
GAGGGAAGGGGGAGAAGAGGATGTTGGTGCGCAAATTGCCACTGTTGCAG
GGGTTGTTGGTTCTGATTTCAGGTACAAGTTCGGCCAGCTTCAGGTAATT
GCCGACGTGCTGGTGTGGGATGTGGGGAAAAATAGAGAATTTCAGGTGTT
CAGGACACAGCCATACAGCACGTTGACACTACTTCTATCAGATAAAAAGA
AACGGTCCAGGTGTACCTGAATCTGTCTTTTTCCCAAAGTATGTTTTAGG
TGATTTGAGTACGTACTGCTGAACGAAGCCTGGCAGCTATACAGGCCCTG
CTGTGTCTATCTTGAAGAACCGTTACCAACGAACAGCCAATACCAGCTAT
GAGCAAGGACGCAAGACTCTCATGCACTACAAGTAAGTCTCTGATGTCAT
GTTCTACAACAATAATGGATGAGGGAGTTACTAGTAGCATTACCACCATG
ATGTCAATGTGTTGTACCGAGACATTCTTTCCCTATGATATAACTCCCGC
GTTGAAAATATCTACAATCCTCGGTACTTGCGCACTCGATAGTATAGTAC
AGGCCCGACCATAAGAAAGTCTTCTTTCGGCTGAGGCTCAAAACCGTATC
TTTATGAGAATCATGAGCAGTACCGTTTCTTGTTTTATATAGGAATTCGT
ATTAGGCCACAATTTGAGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5577:931..9451-

>mRNA_H-paniculata_contig5577.13084.1 ID=mRNA_H-paniculata_contig5577.13084.1|Name=mRNA_H-paniculata_contig5577.13084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig5577:931..9451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCTGATCTGTTGCGATGGGGTGCCACTATTTTTCCAGCAGCGAGA
TGGGATTATCTTCCCTACGCTGAGGATCCTCCACAAATATGTCGCTGATC
TGTTGCGATGGGGTGCCACTATTTTTCCAGCAGCGAGATGGGATTATCTT
CCCTACGCTGAGGATCCTCCACAAATATCCCAACATGATGCCGACCATGC
GAGTCGATAAGGGGGCCATCAGTTTCGTCATGAATGGGGCCAACATAATG
TGCGCGGGCTTCACGTCCAAGGGGGGGCGTATGGAAACACCTTTGGAGGC
TGGGAGCCCTGTGATCCCAACATGATGCCGACCATGCGAGTCGATAAGGG
GGCCATCAGTTTCGTCATGAATGGGGCCAACATAATGTGCGCGGGCTTCA
CGTCCAAGGGGGGGCGTATGGAAACACCTTTGGAGGCTGGGAGCCCTGTG
TGTATTCTAGCGGAGGGGAAGAAAGTGGCATTGGCCGTGGGGGTAACAGC
GATGTCGACAGCAGACATTGTATTCTAGCGGAGGGGAAGAAAGTGGCATT
GGCCGTGGGGGTAACAGCGATGTCGACAGCAGACATAAAATCGGTTAACA
AAGGGAGTGGAGTGGAGAACTTGCACTATTTGGGGGACGGCCTGTTTTTC
ACGAAAGAGTTAGAGTAGAAAATCGGTTAACAAAGGGAGTGGAGTGGAGA
ACTTGCACTATTTGGGGGACGGCCTGTTTTTCACGAAAGAGTTAGAGTAG
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