prot_H-paniculata_contig5569.13072.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig5569.13072.1
Unique Name	prot_H-paniculata_contig5569.13072.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	217

Homology

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: D7G0D5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D5_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 2.970e-115
Identity = 167/216 (77.31%), Postives = 181/216 (83.80%), Query Frame = 0

Query:    1 MKVAAAVTVASLGMTTAFVTPGALRPSSAMQRSQASKSATSMSSVDGMIGVSYEMGEKVFDPLGLSDLHSVAPLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGLYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTGQGY 216
            MKV AA  V SLGM +AFVTPGA R  +A     +SK+  SMS+VDG +GVS E G  VFDPLGL++LHS+ PLV PHPKWLQEAEIKHCRICMLAFVGIWAAQSGF FPGLGY+AVPWYDQF+EFASKNPGGLAQLMLFFA AEG  YCGDFW+GGG+REAGDLGLYLKKP     + LRLQELKNGRLAMISVAACASEHWI GAVP L GQGY
Sbjct:    1 MKVTAAAAVCSLGMASAFVTPGAFRAPTASLSKASSKTPLSMSAVDGEVGVSLEAGGAVFDPLGLAELHSINPLVNPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFVFPGLGYDAVPWYDQFHEFASKNPGGLAQLMLFFAVAEGATYCGDFWSGGGEREAGDLGLYLKKPGKAAVEKLRLQELKNGRLAMISVAACASEHWIKGAVPFLEGQGY 216

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A836CLY0_9STRA (Light harvesting complex protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.290e-45
Identity = 84/175 (48.00%), Postives = 111/175 (63.43%), Query Frame = 0

Query:   49 IGVSYEMGEKVFDPLGLSDLHSVAPL-VQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGV--NYCGDFWNGGGDREAGDLGL----YLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTGQGY 216
            +G   E G + +DP+G S ++ V  L + PHP+WLQE+EIKH R  MLAFVG     +G H PGL Y    WY+ F EFA+KNP GLAQ+M      EG      G  W G G R  G+LG      +K  +  D +T++L+E+KNGRLAMI++A  ASEH+IPG+VP L+GQG+
Sbjct:    6 LGAGVETGNEPWDPMGFSQMYKVNSLGINPHPQWLQESEIKHGRTAMLAFVGTLVIHAGIHIPGLDY-TTDWYNSFPEFAAKNPLGLAQVMAGLTIWEGHYGTEAGLMWTGEGTRNPGELGFDPLNLMKGKSEADVNTMKLKEIKNGRLAMIAMAGFASEHFIPGSVPLLSGQGF 179

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S2BU75_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU75_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.750e-44
Identity = 89/178 (50.00%), Postives = 109/178 (61.24%), Query Frame = 0

Query:   45 VDGMIGVSYEMGEKVFDPLGLSDLHSVAP----LVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPG-LG---YEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGLYL---KKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPAL 211
            +D M+GV  E G KV+DP+    +  V       V P  KWL+EAEIKH R+CMLAFVG   A +G  FPG LG   YEA  WYD      S N  G+AQL++     EG ++  +FW GGGDREAGDLG          G+DFD LRL ELKNGRLAMI++A   S+H +PG+VP L
Sbjct:   51 LDSMVGVGPESGNKVWDPMSFGSVSKVIAGEHSTVMPDVKWLREAEIKHGRVCMLAFVGTCFAANGVVFPGDLGGFHYEACAWYDGLASGLSTNSFGMAQLLMTIGLIEGFSFPAEFWVGGGDREAGDLGFLPFGDAAKNGRDFDELRLSELKNGRLAMIAMAGFFSQHQLPGSVPFL 228

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S2SV94_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV94_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.210e-44
Identity = 88/180 (48.89%), Postives = 108/180 (60.00%), Query Frame = 0

Query:   45 VDGMIGVSYEMGEKVFDPLGLSDLHSVAP----LVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPG-LG---YEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGLYL---KKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 213
            +DGMIGV  E G  V+DPL L  +          V PH KWL+EAEIKH R  MLAFVG  AA +G  FPG LG   YE   WYD      S N  G+AQL +  A  EG  + G+FW GGG+REAGDLG       K   +D D +++ ELKNGRLAMI++A   +EH +PG+VP + G
Sbjct:   36 LDGMIGVGPETGNTVWDPLSLGSVSDTIKGEHSSVMPHAKWLREAEIKHGRAAMLAFVGTMAAATGVVFPGDLGGFHYEPCAWYDGLASAVSTNSFGMAQLFIAIALVEGNAFPGEFWTGGGEREAGDLGFLPFGDAKKNNRDLDEMKISELKNGRLAMIAMAGLFAEHQLPGSVPLIPG 215

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A8J5XJ42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ42_DIALT)

HSP 1 Score: 134 bits (336), Expect = 1.120e-35
Identity = 79/177 (44.63%), Postives = 105/177 (59.32%), Query Frame = 0

Query:   44 SVDGMIGVSYEMGEKVFDPLGLSDLHSV----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWN-GGGDREAGDLG---LYLKKPTGK-DFDTLRLQELKNGRLAMISVAACASEHWIPGAVPAL 211
            S+  + G S E+G K +DPLG + L+++     P   P  KWL+EAE+KHCR+ MLAF+G      G H PG  +    W+     F+++NPGG AQ++L  A  EG  +  +FW  GGG R AG LG   L L K   K   D ++L+ELKNGRLAMI+ AA AS   I G+VP L
Sbjct:   27 SLSDLPGASIELGGKPWDPLGFAKLNALPTGSGPASNPSLKWLREAEVKHCRVAMLAFLGTAFQTFGPHLPGAAFSEPDWFKASYTFSAQNPGGAAQILLGIAIIEGSTFPEEFWEAGGGSRAAGALGFDPLGLSKGLPKAKADEMQLKELKNGRLAMIACAALASSKLIAGSVPYL 203

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: I2CR44_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR44_NANGC)

HSP 1 Score: 131 bits (330), Expect = 7.510e-35
Identity = 80/174 (45.98%), Postives = 103/174 (59.20%), Query Frame = 0

Query:   45 VDGMIGVSYEMGEKVFDPLGLSDLHSVAPL-VQPHPKWLQEAEIKHCRICMLAFVGIWAAQS-GFHFPGLGYEAVPWYDQ-FNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGL----YLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPAL 211
            ++G +G   E G K +DPLG + +     L + PH KWLQE+EIKH R  MLAF+G+    S G + P   Y   P + Q F +    NP G+AQ+ L  A  EG  Y GDFW GGGDRE G  G     + K  +     ++RL+ELKNGRLAMI++AA ASE  IPG+VP L
Sbjct:   17 LEGQVGYDVETGGKPWDPLGFAGISERNNLGINPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGVYVPT--YPQEPDFTQAFYKALQNNPLGMAQIALAIAIIEGHYYAGDFWTGGGDREVGAFGFDPLGFSKGKSEAALKSMRLKELKNGRLAMIAMAAFASEKLIPGSVPLL 188

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S1QB46_ALECA (Hypothetical protein n=3 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QB46_ALECA)

HSP 1 Score: 136 bits (343), Expect = 3.230e-34
Identity = 83/176 (47.16%), Postives = 103/176 (58.52%), Query Frame = 0

Query:   48 MIGVSYEMGEKVFDPLGLSDLHSV-----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNE-FASKNPG-GLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLG---LYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 213
            M+G   EMGE+ +DP+G S L+         +  PH +WL+EAE+KH R+CMLAFVG    Q   H PGL  EA  W       +A K    G+ Q+ +F    EG  Y GD W G  DRE GDLG   L L K  G D   L+LQE+KNGRLAMI VA+ A+ H IPG+VP L+G
Sbjct:  115 MVGTDVEMGEEPWDPMGFSKLYDRNFDFNMVMTYPHVQWLREAEVKHGRVCMLAFVGAIVQQFA-HIPGLPVEA-DWTKALGACYADKTAALGIVQISVFAMVVEGRYYSGDAWIGQMDREPGDLGFDPLKLSKRPGFDLKKLQLQEIKNGRLAMIGVASLAANHSIPGSVPMLSG 288

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S1MAA1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MAA1_ALECA)

HSP 1 Score: 136 bits (343), Expect = 3.310e-34
Identity = 83/176 (47.16%), Postives = 103/176 (58.52%), Query Frame = 0

Query:   48 MIGVSYEMGEKVFDPLGLSDLHSV-----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNE-FASKNPG-GLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLG---LYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 213
            M+G   EMGE+ +DP+G S L+         +  PH +WL+EAE+KH R+CMLAFVG    Q   H PGL  EA  W       +A K    G+ Q+ +F    EG  Y GD W G  DRE GDLG   L L K  G D   L+LQE+KNGRLAMI VA+ A+ H IPG+VP L+G
Sbjct:  117 MVGTDVEMGEEPWDPMGFSKLYDRNFDFNMVMTYPHVQWLREAEVKHGRVCMLAFVGAIVQQFA-HIPGLPVEA-DWTKALGACYADKTAALGIVQISVFAMVVEGRYYSGDAWIGQMDREPGDLGFDPLKLSKRPGFDLKKLQLQEIKNGRLAMIGVASLAANHSIPGSVPMLSG 290

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S1M9U8_ALECA (Hypothetical protein n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1M9U8_ALECA)

HSP 1 Score: 136 bits (342), Expect = 4.430e-34
Identity = 82/176 (46.59%), Postives = 103/176 (58.52%), Query Frame = 0

Query:   48 MIGVSYEMGEKVFDPLGLSDLHSV-----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNE-FASKNPG-GLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLG---LYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 213
            M+G   EMGE+ +DP+G S L+         +  PH +WL+EAE+KH R+CMLAFVG    Q   H PGL  EA  W       +A K    G+ Q+ +F    EG  Y GD W G  DRE GDLG   L L K  G D   L+LQE+KNGRLAMI VA+ A+ H +PG+VP L+G
Sbjct:  115 MVGTDVEMGEEPWDPMGFSKLYDRNFDFNMVMTYPHVQWLREAEVKHGRVCMLAFVGAIVQQFA-HIPGLPVEA-DWTKALGACYADKTAALGIVQISVFAMVVEGRYYSGDAWIGQMDREPGDLGFDPLKLSKRPGFDLKKLQLQEIKNGRLAMIGVASLAANHSVPGSVPLLSG 288

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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: Q9ATC4_VAULI (Light harvesting complex protein 2 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=Q9ATC4_VAULI)

HSP 1 Score: 127 bits (320), Expect = 6.190e-34
Identity = 69/148 (46.62%), Postives = 92/148 (62.16%), Query Frame = 0

Query:   75 VQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVN--YCGDFWNGGGDREAGDLGLYL----KKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTGQGY 216
            + PHP+WLQE+EIKH RICMLAFVG     +G H P LGY +  WY+ F EF +KNP GLAQ++      EG +    G  W G  +R+ G L   L    K        +++L+E+KNGRLAM+++AA ASEH+I G+VP L   G+
Sbjct:    4 INPHPQWLQESEIKHGRICMLAFVGTLVIHAGIHIPNLGYTS-DWYNSFPEFVAKNPLGLAQVIAGLTIWEGFHGTETGLMWTGEANRKPGHLNFDLLNLMKGKNESQLKSIQLKEIKNGRLAMVAMAAFASEHFISGSVPLLDLFGF 150

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0D5_ECTSI	2.970e-115	77.31	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A836CLY0_9STRA	1.290e-45	48.00	Light harvesting complex protein 2 n=1 Tax=Tribone...	[more]
A0A7S2BU75_9STRA	1.750e-44	50.00	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2SV94_9STRA	2.210e-44	48.89	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A8J5XJ42_DIALT	1.120e-35	44.63	Uncharacterized protein n=1 Tax=Diacronema lutheri...	[more]
I2CR44_NANGC	7.510e-35	45.98	Uncharacterized protein n=1 Tax=Nannochloropsis ga...	[more]
A0A7S1QB46_ALECA	3.230e-34	47.16	Hypothetical protein n=3 Tax=Alexandrium catenella...	[more]
A0A7S1MAA1_ALECA	3.310e-34	47.16	Hypothetical protein n=1 Tax=Alexandrium catenella...	[more]
A0A7S1M9U8_ALECA	4.430e-34	46.59	Hypothetical protein n=2 Tax=Alexandrium catenella...	[more]
Q9ATC4_VAULI	6.190e-34	46.62	Light harvesting complex protein 2 (Fragment) n=4 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 48..213 e-value: 2.7E-23 score: 84.7
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 54..201 e-value: 1.2E-23 score: 84.4
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 25..211
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 25..211
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..216
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..12
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 55..206

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5569	contig	H-paniculata_contig5569:4582..10543 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5569.13072.1	mRNA_H-paniculata_contig5569.13072.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig5569 4443..11492 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig5569.13072.1 ID=prot_H-paniculata_contig5569.13072.1|Name=mRNA_H-paniculata_contig5569.13072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MKVAAAVTVASLGMTTAFVTPGALRPSSAMQRSQASKSATSMSSVDGMIG
VSYEMGEKVFDPLGLSDLHSVAPLVQPHPKWLQEAEIKHCRICMLAFVGI
WAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYC
GDFWNGGGDREAGDLGLYLKKPTGKDFDTLRLQELKNGRLAMISVAACAS
EHWIPGAVPALTGQGY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln