mRNA_H-paniculata_contig5569.13072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5569.13072.1
Unique NamemRNA_H-paniculata_contig5569.13072.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: D7G0D5_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0D5_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 5.950e-110
Identity = 167/216 (77.31%), Postives = 181/216 (83.80%), Query Frame = 2 
Query:  140 MKVAAAVTVASLGMTTAFVTPGALRPSSAMQRSQASKSATSMSSVDGMIGVSYEMGEKVFDPLGLSDLHSVAPLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGLYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTGQGY 787
            MKV AA  V SLGM +AFVTPGA R  +A     +SK+  SMS+VDG +GVS E G  VFDPLGL++LHS+ PLV PHPKWLQEAEIKHCRICMLAFVGIWAAQSGF FPGLGY+AVPWYDQF+EFASKNPGGLAQLMLFFA AEG  YCGDFW+GGG+REAGDLGLYLKKP     + LRLQELKNGRLAMISVAACASEHWI GAVP L GQGY
Sbjct:    1 MKVTAAAAVCSLGMASAFVTPGAFRAPTASLSKASSKTPLSMSAVDGEVGVSLEAGGAVFDPLGLAELHSINPLVNPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFVFPGLGYDAVPWYDQFHEFASKNPGGLAQLMLFFAVAEGATYCGDFWSGGGEREAGDLGLYLKKPGKAAVEKLRLQELKNGRLAMISVAACASEHWIKGAVPFLEGQGY 216
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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A836CLY0_9STRA (Light harvesting complex protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLY0_9STRA)

HSP 1 Score: 158 bits (399), Expect = 8.800e-42
Identity = 84/175 (48.00%), Postives = 111/175 (63.43%), Query Frame = 2 
Query:  284 IGVSYEMGEKVFDPLGLSDLHSVAPL-VQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGV--NYCGDFWNGGGDREAGDLGL----YLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTGQGY 787
            +G   E G + +DP+G S ++ V  L + PHP+WLQE+EIKH R  MLAFVG     +G H PGL Y    WY+ F EFA+KNP GLAQ+M      EG      G  W G G R  G+LG      +K  +  D +T++L+E+KNGRLAMI++A  ASEH+IPG+VP L+GQG+
Sbjct:    6 LGAGVETGNEPWDPMGFSQMYKVNSLGINPHPQWLQESEIKHGRTAMLAFVGTLVIHAGIHIPGLDY-TTDWYNSFPEFAAKNPLGLAQVMAGLTIWEGHYGTEAGLMWTGEGTRNPGELGFDPLNLMKGKSEADVNTMKLKEIKNGRLAMIAMAGFASEHFIPGSVPLLSGQGF 179
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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S2BU75_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU75_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.170e-41
Identity = 89/178 (50.00%), Postives = 109/178 (61.24%), Query Frame = 2 
Query:  272 VDGMIGVSYEMGEKVFDPLGLSDLHSVAP----LVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPG-LG---YEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGLYL---KKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPAL 772
            +D M+GV  E G KV+DP+    +  V       V P  KWL+EAEIKH R+CMLAFVG   A +G  FPG LG   YEA  WYD      S N  G+AQL++     EG ++  +FW GGGDREAGDLG          G+DFD LRL ELKNGRLAMI++A   S+H +PG+VP L
Sbjct:   51 LDSMVGVGPESGNKVWDPMSFGSVSKVIAGEHSTVMPDVKWLREAEIKHGRVCMLAFVGTCFAANGVVFPGDLGGFHYEACAWYDGLASGLSTNSFGMAQLLMTIGLIEGFSFPAEFWVGGGDREAGDLGFLPFGDAAKNGRDFDELRLSELKNGRLAMIAMAGFFSQHQLPGSVPFL 228
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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S2SV94_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV94_9STRA)

HSP 1 Score: 156 bits (395), Expect = 9.920e-41
Identity = 88/180 (48.89%), Postives = 108/180 (60.00%), Query Frame = 2 
Query:  272 VDGMIGVSYEMGEKVFDPLGLSDLHSVAP----LVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPG-LG---YEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGLYL---KKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 778
            +DGMIGV  E G  V+DPL L  +          V PH KWL+EAEIKH R  MLAFVG  AA +G  FPG LG   YE   WYD      S N  G+AQL +  A  EG  + G+FW GGG+REAGDLG       K   +D D +++ ELKNGRLAMI++A   +EH +PG+VP + G
Sbjct:   36 LDGMIGVGPETGNTVWDPLSLGSVSDTIKGEHSSVMPHAKWLREAEIKHGRAAMLAFVGTMAAATGVVFPGDLGGFHYEPCAWYDGLASAVSTNSFGMAQLFIAIALVEGNAFPGEFWTGGGEREAGDLGFLPFGDAKKNNRDLDEMKISELKNGRLAMIAMAGLFAEHQLPGSVPLIPG 215
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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A8J5XJ42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ42_DIALT)

HSP 1 Score: 134 bits (336), Expect = 1.470e-32
Identity = 79/177 (44.63%), Postives = 105/177 (59.32%), Query Frame = 2 
Query:  269 SVDGMIGVSYEMGEKVFDPLGLSDLHSV----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYCGDFWN-GGGDREAGDLG---LYLKKPTGK-DFDTLRLQELKNGRLAMISVAACASEHWIPGAVPAL 772
            S+  + G S E+G K +DPLG + L+++     P   P  KWL+EAE+KHCR+ MLAF+G      G H PG  +    W+     F+++NPGG AQ++L  A  EG  +  +FW  GGG R AG LG   L L K   K   D ++L+ELKNGRLAMI+ AA AS   I G+VP L
Sbjct:   27 SLSDLPGASIELGGKPWDPLGFAKLNALPTGSGPASNPSLKWLREAEVKHCRVAMLAFLGTAFQTFGPHLPGAAFSEPDWFKASYTFSAQNPGGAAQILLGIAIIEGSTFPEEFWEAGGGSRAAGALGFDPLGLSKGLPKAKADEMQLKELKNGRLAMIACAALASSKLIAGSVPYL 203
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BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: I2CR44_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR44_NANGC)

HSP 1 Score: 131 bits (330), Expect = 8.560e-32
Identity = 80/174 (45.98%), Postives = 103/174 (59.20%), Query Frame = 2 
Query:  272 VDGMIGVSYEMGEKVFDPLGLSDLHSVAPL-VQPHPKWLQEAEIKHCRICMLAFVGIWAAQS-GFHFPGLGYEAVPWYDQ-FNEFASKNPGGLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLGL----YLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPAL 772
            ++G +G   E G K +DPLG + +     L + PH KWLQE+EIKH R  MLAF+G+    S G + P   Y   P + Q F +    NP G+AQ+ L  A  EG  Y GDFW GGGDRE G  G     + K  +     ++RL+ELKNGRLAMI++AA ASE  IPG+VP L
Sbjct:   17 LEGQVGYDVETGGKPWDPLGFAGISERNNLGINPHIKWLQESEIKHGRTAMLAFLGVIVPGSLGVYVPT--YPQEPDFTQAFYKALQNNPLGMAQIALAIAIIEGHYYAGDFWTGGGDREVGAFGFDPLGFSKGKSEAALKSMRLKELKNGRLAMIAMAAFASEKLIPGSVPLL 188
[Close]
BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S1QB46_ALECA (Hypothetical protein n=3 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1QB46_ALECA)

HSP 1 Score: 136 bits (343), Expect = 5.370e-31
Identity = 83/176 (47.16%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:  281 MIGVSYEMGEKVFDPLGLSDLHSV-----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNE-FASKNPG-GLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLG---LYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 778
            M+G   EMGE+ +DP+G S L+         +  PH +WL+EAE+KH R+CMLAFVG    Q   H PGL  EA  W       +A K    G+ Q+ +F    EG  Y GD W G  DRE GDLG   L L K  G D   L+LQE+KNGRLAMI VA+ A+ H IPG+VP L+G
Sbjct:  115 MVGTDVEMGEEPWDPMGFSKLYDRNFDFNMVMTYPHVQWLREAEVKHGRVCMLAFVGAIVQQFA-HIPGLPVEA-DWTKALGACYADKTAALGIVQISVFAMVVEGRYYSGDAWIGQMDREPGDLGFDPLKLSKRPGFDLKKLQLQEIKNGRLAMIGVASLAANHSIPGSVPMLSG 288
[Close]
BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S1MAA1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MAA1_ALECA)

HSP 1 Score: 136 bits (343), Expect = 5.510e-31
Identity = 83/176 (47.16%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:  281 MIGVSYEMGEKVFDPLGLSDLHSV-----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNE-FASKNPG-GLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLG---LYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 778
            M+G   EMGE+ +DP+G S L+         +  PH +WL+EAE+KH R+CMLAFVG    Q   H PGL  EA  W       +A K    G+ Q+ +F    EG  Y GD W G  DRE GDLG   L L K  G D   L+LQE+KNGRLAMI VA+ A+ H IPG+VP L+G
Sbjct:  117 MVGTDVEMGEEPWDPMGFSKLYDRNFDFNMVMTYPHVQWLREAEVKHGRVCMLAFVGAIVQQFA-HIPGLPVEA-DWTKALGACYADKTAALGIVQISVFAMVVEGRYYSGDAWIGQMDREPGDLGFDPLKLSKRPGFDLKKLQLQEIKNGRLAMIGVASLAANHSIPGSVPMLSG 290
[Close]
BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: A0A7S1M9U8_ALECA (Hypothetical protein n=2 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1M9U8_ALECA)

HSP 1 Score: 136 bits (342), Expect = 7.210e-31
Identity = 82/176 (46.59%), Postives = 103/176 (58.52%), Query Frame = 2 
Query:  281 MIGVSYEMGEKVFDPLGLSDLHSV-----APLVQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNE-FASKNPG-GLAQLMLFFATAEGVNYCGDFWNGGGDREAGDLG---LYLKKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTG 778
            M+G   EMGE+ +DP+G S L+         +  PH +WL+EAE+KH R+CMLAFVG    Q   H PGL  EA  W       +A K    G+ Q+ +F    EG  Y GD W G  DRE GDLG   L L K  G D   L+LQE+KNGRLAMI VA+ A+ H +PG+VP L+G
Sbjct:  115 MVGTDVEMGEEPWDPMGFSKLYDRNFDFNMVMTYPHVQWLREAEVKHGRVCMLAFVGAIVQQFA-HIPGLPVEA-DWTKALGACYADKTAALGIVQISVFAMVVEGRYYSGDAWIGQMDREPGDLGFDPLKLSKRPGFDLKKLQLQEIKNGRLAMIGVASLAANHSVPGSVPLLSG 288
[Close]
BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Match: Q9ATC4_VAULI (Light harvesting complex protein 2 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=Q9ATC4_VAULI)

HSP 1 Score: 127 bits (319), Expect = 7.530e-31
Identity = 69/148 (46.62%), Postives = 92/148 (62.16%), Query Frame = 2 
Query:  362 VQPHPKWLQEAEIKHCRICMLAFVGIWAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVN--YCGDFWNGGGDREAGDLGLYL----KKPTGKDFDTLRLQELKNGRLAMISVAACASEHWIPGAVPALTGQGY 787
            + PHP+WLQE+EIKH RICMLAFVG     +G H P LGY +  WY+ F EF +KNP GLAQ++      EG +    G  W G  +R+ G L   L    K        +++L+E+KNGRLAM+++AA ASEH+I G+VP L   G+
Sbjct:    4 INPHPQWLQESEIKHGRICMLAFVGTLVIHAGIHIPNLGYTS-DWYNSFPEFVAKNPLGLAQVIAGLTIWEGFHGTETGLMWTGEANRKPGHLNFDLLNLMKGKNESQLKSIQLKEIKNGRLAMVAMAAFASEHFISGSVPLLDLFGF 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5569.13072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D5_ECTSI5.950e-11077.31Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A836CLY0_9STRA8.800e-4248.00Light harvesting complex protein 2 n=1 Tax=Tribone... [more]
A0A7S2BU75_9STRA8.170e-4150.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SV94_9STRA9.920e-4148.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J5XJ42_DIALT1.470e-3244.63Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
I2CR44_NANGC8.560e-3245.98Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1QB46_ALECA5.370e-3147.16Hypothetical protein n=3 Tax=Alexandrium catenella... [more]
A0A7S1MAA1_ALECA5.510e-3147.16Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S1M9U8_ALECA7.210e-3146.59Hypothetical protein n=2 Tax=Alexandrium catenella... [more]
Q9ATC4_VAULI7.530e-3146.62Light harvesting complex protein 2 (Fragment) n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5569contigH-paniculata_contig5569:4443..11492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.0
Seed ortholog evalue1.7e-90
Seed eggNOG ortholog2880.D7G0D5
Hectar predicted targeting categorychloroplast
EggNOG free text desc.light harvesting protein
EggNOG OGs2CDPH@1,2SBCH@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-02_000850.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1739
Cds size651
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.9737473-UTR-H-paniculata_contig5569:4442..45811622930586.9737473-UTR-H-paniculata_contig5569:4442..4581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5569 4443..4581 +
1691481360.3832326-UTR-H-paniculata_contig5569:4442..45811691481360.3832326-UTR-H-paniculata_contig5569:4442..4581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5569 4443..4581 +
1622930587.0863173-UTR-H-paniculata_contig5569:10543..114921622930587.0863173-UTR-H-paniculata_contig5569:10543..11492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5569 10544..11492 +
1691481360.4756098-UTR-H-paniculata_contig5569:10543..114921691481360.4756098-UTR-H-paniculata_contig5569:10543..11492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5569 10544..11492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.9890358-CDS-H-paniculata_contig5569:4581..46831622930586.9890358-CDS-H-paniculata_contig5569:4581..4683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 4582..4683 +
1691481360.3967867-CDS-H-paniculata_contig5569:4581..46831691481360.3967867-CDS-H-paniculata_contig5569:4581..4683Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 4582..4683 +
1622930587.0021899-CDS-H-paniculata_contig5569:6401..65391622930587.0021899-CDS-H-paniculata_contig5569:6401..6539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 6402..6539 +
1691481360.4088073-CDS-H-paniculata_contig5569:6401..65391691481360.4088073-CDS-H-paniculata_contig5569:6401..6539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 6402..6539 +
1622930587.0151286-CDS-H-paniculata_contig5569:7799..78631622930587.0151286-CDS-H-paniculata_contig5569:7799..7863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 7800..7863 +
1691481360.4216306-CDS-H-paniculata_contig5569:7799..78631691481360.4216306-CDS-H-paniculata_contig5569:7799..7863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 7800..7863 +
1622930587.0281863-CDS-H-paniculata_contig5569:8605..87091622930587.0281863-CDS-H-paniculata_contig5569:8605..8709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 8606..8709 +
1691481360.4302464-CDS-H-paniculata_contig5569:8605..87091691481360.4302464-CDS-H-paniculata_contig5569:8605..8709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 8606..8709 +
1622930587.040231-CDS-H-paniculata_contig5569:9065..91721622930587.040231-CDS-H-paniculata_contig5569:9065..9172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 9066..9172 +
1691481360.438644-CDS-H-paniculata_contig5569:9065..91721691481360.438644-CDS-H-paniculata_contig5569:9065..9172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 9066..9172 +
1622930587.0611055-CDS-H-paniculata_contig5569:10042..101001622930587.0611055-CDS-H-paniculata_contig5569:10042..10100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 10043..10100 +
1691481360.4478786-CDS-H-paniculata_contig5569:10042..101001691481360.4478786-CDS-H-paniculata_contig5569:10042..10100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 10043..10100 +
1622930587.0739386-CDS-H-paniculata_contig5569:10465..105431622930587.0739386-CDS-H-paniculata_contig5569:10465..10543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 10466..10543 +
1691481360.459174-CDS-H-paniculata_contig5569:10465..105431691481360.459174-CDS-H-paniculata_contig5569:10465..10543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5569 10466..10543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5569.13072.1prot_H-paniculata_contig5569.13072.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5569 4582..10543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5569.13072.1

>prot_H-paniculata_contig5569.13072.1 ID=prot_H-paniculata_contig5569.13072.1|Name=mRNA_H-paniculata_contig5569.13072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MKVAAAVTVASLGMTTAFVTPGALRPSSAMQRSQASKSATSMSSVDGMIG
VSYEMGEKVFDPLGLSDLHSVAPLVQPHPKWLQEAEIKHCRICMLAFVGI
WAAQSGFHFPGLGYEAVPWYDQFNEFASKNPGGLAQLMLFFATAEGVNYC
GDFWNGGGDREAGDLGLYLKKPTGKDFDTLRLQELKNGRLAMISVAACAS
EHWIPGAVPALTGQGY*
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mRNA from alignment at H-paniculata_contig5569:4443..11492+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5569.13072.1 ID=mRNA_H-paniculata_contig5569.13072.1|Name=mRNA_H-paniculata_contig5569.13072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7050bp|location=Sequence derived from alignment at H-paniculata_contig5569:4443..11492+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGATCCTCCTCGCCTCTCCTGCTCTCTTATCAGGCCAGTATTGTTGG
CGTTTGCTCATCTGCTGTCTCTTGCTATCTGCGTAAAAGCCCGACCATCA
ACCTAAGCAAGAGAAGATTTTACAGACACGCCCTGTACAATGAAGGTCGC
AGCTGCTGTTACTGTCGCCTCTCTCGGCATGACAACCGCGTTCGTTACCC
CTGGCGCACTTCGCCCCAGCAGCGCCATGCAGAGGTCGCAGGTGAGCTCC
TGAAAAATTCGACATCTGGAACAGATTGCGAAAGGCAAGCAACTGAGCAC
TCTGAGGCAGAGTGTTGTGAGCTGTTCGCAGAGCCAAGCTGTACTGTTAC
CACTAAAGTAAAATGCAAATGGGATGCTTGGGTGGATGAAGTGTTGTGGT
GAACGACGTCATTCATCATACTGAACGCCTCTGGATGTTTACACTACTGT
TTTTTCTGAGATGGTCACCTTGATCATCAAACCTTCGACATCGCTGTGTA
ATGTATCTGTGTTGCTGTGGCTTGTTGAGTGAGTGTGGAGTCCCTATATT
CTGTTCGGTTTGTCTCTACTCTAAAGGGTAATTTCAACGACGTTAGTAAG
ACAACTGTCCATAATCAAGTCAATCGCTTACGTCGCGCATACCATGTCTT
GATATGTAATCCATGTATTTGTAACAGTGATCATATGTGTGCATCTGGTG
CGTTATACCAAGTACAAGCTCTCGCTCATTGAAGCAAATATACGCGAGAA
AGACCTGGCCTTGCTTATTTTATTTTGGAACATGATTTAAGTTGCTGAAA
ATGGCCTGTTTACAAACGTCAGCGAGGGAAGTGTATCTCGAGTATGTACA
ACTTAGCCGGAATTCGAGAGGAACGGTCAAAATGACACACCCTCTAGTGA
CCATAGTGGGGTTATCATGAGGAAGATGCGCTGCACTGGAATTCGATGGA
AAACATCGCCGGTATCTGTCTGTTCGCCTTTGGTGATACAGGGTTACCAC
AAGAGCATGAACACCTACTGACTGCAAGCAAGCATTGACCTCCCTTGAGA
TGGCACAATCATCCCAGGAAGCAATGTATGTACATGTACACCTGCAAATG
GTTATAGCGCTGGTGTGTGCAATATGCATGAAACGTACCTTCGATGACGG
GCGTTCGCATGCTTTTCTTCGCCGAAACAGTGATTTATGTAGCCTGCACA
GGATGTGGCGGCTAGGTTTGTGGGGCGTAGTGTGCAAGACCCCTGCCCAC
ATTGTCTCCTGTCTAAAAACAAAAAATTGGTTTCTTTCGTTAGGTAAACG
AGAATGGATGCGTCTGAAAGGATGCCATCTAGCGTTATATTCATATCGTA
TGACCCGAGATCCCTCTGAACGGGTATAGAGGCGACTGGTGCACTGAGGA
TAATGAGTGTCGTCTGTACGCGCGGCCAGCACCTGTCTGGTATTCATGTC
TGCAATTTGTGCACCCGACCCAAATCGTTTCTGGGACATGTGTGGACTGA
CCGATGACGAATCTATCATTGTCGAGCTCAACGGCCGGGAAATGTCGTTC
GGACGAGCAATCTGAATCATCAAGGAAAACTGTAAGAGCTGCTGTCCTCA
AGTCACATGCCATGCCCGGGTGATGTGCAAGCGAGTGGCAAGGTTCATCA
CTCTCAAAGCTGGGTCCAAGTTTGAAGACCGTTGATAGAATGAATTCTGA
TGAGACGACTATTGGGCCTTCGCCATTCAAAAATTATGAGACGACCAATA
GAGTGGAGTCAAGGGGGGATCTTGTCGGCAATACCCACTGCACTTGTTCA
CACGAGACTGAAAAGTAGATGTGTTTTTCAAGGGATCAACGTTGGTGCAA
GAATCCCGTCATATCCTCCTTTTTGTATTCTGTGTACATTTTGTTGACAG
TTGCACTGTTCTCTGGCGTTCTCTCCGAATTGTCCCCTTTTCTCCCGGTA
AAATGTCAGGCATCTAAGTCGGCGACTTCGATGAGCAGCGTTGACGGAAT
GATCGGTGTATCTTACGAGATGGGGGAGAAGGTGTTTGACCCCCTTGGCT
TGTCGGATCTCCACTCGGTTGCACCGCTCGTACAACCCCACCCAAAGGTA
TGAAAATCGGTCGAATTTAATGTCCTCATCCGTTTTTTTTTTATTTTCGG
AGAACCATCCAGGGTTCTAGAACTGTCGTGAAGTATCTTAATGGCCGACC
TGGCGATTTTTGTCGTTTTACCATCGACAGTCAGTTGCTATGCCTTGAAT
CACGGTGCATATTGTACTTCACAACCACGACCCAGTGGACCCTGCGTCGA
CGAAAGATTTCGGACCAAACATTCGAGTTCCAATGTTTTCTTGTATCTGT
TCGGGTCAGCACGAAGAACACGAAATTTACGTTGTCCTACCCGACATTCA
CGTCAAATCTGGAGCCTAGCGCAACCCCATACCTCTCGAAACAATCCGTC
GTCTCGAGGGAGAGAGACTTGTATGTCGCTATTTAGAACATGTCTAGTAA
AGTTTATTCCAGTAGTGATGTTCACGTTTACCCCCCCCTTCCCCAATTTT
GGTGGATCAGCACGCACATGTTGGTATTCAAGTTAGGGAAGACAATCAAT
GATCATACATGTGATTGAAAAAGAGGAAGGACCCAATGGGAAAATTGCAC
CAGAGAGGTCTTGACCTAAATTTCACGTATCGACACAACGCTTTTTTGAA
ATGTCATCAATCATGCGTTGGAATACACTGAAGTATCGGAGGAATGTAGT
GAGAGGATAATTATATGCTTGAAGTCCACTTCCAACGCAGCAAGGGCGTA
TATTCCCAGAAGACGATGAGAGACTTGAAGTTGAAGTAGCGTCATTACCT
CGTGTAGAGTGGGAGAAAGAAGATTGCTCAAATCGTAGGAGCAGATAGCA
AATCAGGTACTTGACAACGTGGGACAGAGTGACTGGTCATCGAAAATCGC
CCCGACGTAAGGAAAAATTCGTCGTACCTGGTACGCATGGTCAATGGTCC
AACAACTATCATTTTTTGGAACATTCGTCAACGCCTCAACTTGAGCATCG
TATTAGTCGATACAACGGGCGATAATATATGCCGTATACATCGGGGACCG
TTTTATACATTTTTTGTGCCCCACTACTTGTGACATGAATGGACTTAATT
TTGAGCTTCAAAACAATGATATCGTCTTTTTGTGCCAACCGCACAAACCT
TTGAACAATGGACCGTGTGTCGCGTGAGGAAAATTCAGCTAACTCTTGAA
TATTTTTTAACAACTATTTCTCTTTCGTTTGTATCAACATTTTGGTAGTG
GGTCCGCTGATGGCTGTCCTTGTTATGCTCGGTTGTTACCCTGCTGTGCT
AATGTAGTGGCTTCAGGAGGCGGAGATCAAGCACTGCCGCATCTGCATGT
TGGCCTTCGTAGGGATCTGGGGTGAGTGTTTCAGGTTTTTCAAACGCGGG
AAAGTGGTGAAACTACAGCTGCACATGTTGCGGTTGCATTTCACTGTCGA
CCTAGGCTTGACGGGCTTGTTTCACTTGAAGTGACTCACTAGTTCGCATC
GATCTCACCTTCGAAATAATTCGAGACAAAGCGATTCAGTGGGATTGTTT
TCTGGCAGTTATCTCGGGGGTTACCAAGCGTCGCTGCACCCATGCGTCGA
TTTGTCTGTCATCCTCGTCTACAATATCGACACAGATGTCCCATAGGGCG
GCCGGGCGCCCACCTTGAATTGGTTACGTGCTTCATACTGGGATATTTTA
GCATCGCCGGTTGCCATCTCCCAGGAGAACCTCCCAGTGTATCCTTCGTC
CCATTTTATGATTTTTCTTACTTGAGCTGTCGATTTTTCTCGATGGTGAA
ATTAGTGTTAAACTATCATTTATTCAAATTCCAGTACGAAACTTGGGAGT
CTATAATGAACTGTAGTTTTCCGACACCAGAAGAGGTGATATAATGTCAA
AAAGTAGGAACACTGCTATACGGGTTTTTTGCTAGAGATGGCAAACAAGA
TGGAGAAATGATGCCGTGATCAGCGGCAATTCATCTGCTGTGTGTTTTTG
CTTCGAGAGCAGATGGTCGTTCATGTCTCTCGGTAGTTAACCCCTTGAAG
ATTTTAACCAGAAACCCCCCGCTCTTCTGGTGCTTGCTCTCGCTTTGATT
TCGGTTTACGCAGCTGCGCAATCAGGGTTTCATTTCCCCGGACTCGGGTA
CGAAGCGGTGCCGTGGTACGACCAATTCAATGAGTTCGCGAGCAAGAACC
CTGGAGGGCTTGCACAGGTAGGGAAATAATGGATAGTATCCGGCCTCATC
TCTCCAAGGTCGTGAAACTTGGCCACTATGATGTGCTCCCTGTATTTAAT
GTCTGCCCTTCCGACTTGGAAATATCTTGAACGGTATGCTGCATATATCA
CCTTAGTTGATGACTCCGGAAATTGATCTTGACGAGAGCAAGACCTAAAA
TTCTGTTCGATCACGGAAACACAGACAGTTCGATACAGGTACGCGACGGT
CGCCAGCATGTGGGTGTTCAAGCCTTGAGCCGAGGTTCGTTTGTGGTCCG
ATACTTTACAAGCTTCCCTTTGCTCCCCAATATTTTTGTCTCCTGGTCTC
GCATGTTGGTTTCTGGTATATAGCTCATGTTGTTCTTTGCGACCGCGGAG
GGTGTGAACTACTGCGGTGACTTCTGGAACGGGGGTGGGGACCGTGAAGC
TGGGGACCTGGGACTTTACTTGAAGAAGCCGTAAGTACCTTTAATACATA
CCTGGGATGTACAAACTGTAGCAAGCCAACGGGTCTGTTTTCCTGAAATC
TCGTCCTGTGTAGTAAGGAGGCCTGTAGCGTACCTGACGGTGACCCCCCC
CGGTACCCCTCCCCCCCCTCTATACGACCATGTTCATTATTGCACTGGTT
TGTAAGTGAATCAAGTATCAGAAATAATGATAGCCAAGGGGATGGTGACA
TTTGCAATGGCGAAGCCCTTTACATTTTTGAAGAGTGTATGTGGATGATG
CATATGTCACAGGCGGTTCGTGTATTTTTCAGTTGAAGGATATCAATGTA
CGAAATGGTTGGTTTGAACGTCTATTCAAATTGTAAGAGAGGCTTGTCTT
GCCCATGACTGCAGCGAGGTTTTTGCTCCTGGTCCATGCTCGGAACATGA
TTGGTTGAGAGTTGCATCAAGTTCTCATTTGTTTGGTCTGGCACCCTCTG
TGGCTCGACACTCGTGTAGATGCCGGAATGAATCTTTTCCGTGGCTCGTG
TTGTTGGCCCGTGCGGGAAGACGTTTTGCTTAGGGTGCGATTCAAGTCTT
TCATGGCCCATCCCGTAAGCCTGCAAAGATGACGGAGATGTTGTCCTCCC
TCGGAATACCAACTTGATGAGTAATATATGAATAATGTTCGCATCGCTCG
AAGGAGACACGAAGTGCAGAAATATATTGCATCCCACTAGGCACTGGAGG
TTGACGTTAGTCACGAGCGTGTTGGGTCCGGTTCTTGAGAACCGGCCGTG
GCTAAACCTTTTCTAGGTGCCAACAACGGCTCTGAATGTTCATGTGCTGG
AAATATATCCGACTTGAGTGCTCTTTCTTTCTGATATTCTACTTTTTTAG
GACCGGAAAGGACTTCGACACTCTCCGGCTGCAGGAGCTCAAGAACGGCC
GGCTGGCGGTAAGTTTTATTGTTTGACGAAGAGATATAACTGGTAATGTG
ATTCCCTTGGCTGTGAGTCTTGGACTAAGTAATAGTGTTTTTAGCCCTTA
CCCAGCGCACAACCCCAAATGGTCTCTCATGGTGGCCCCTTTGAAGGTGC
ATGTTCTGACCTTGATATGCGATCAAACGCGTAACGGAAGCAGTAGAGGC
GGATGTCACTAGTGATCGAGAAGAACAGAGGTTAGGGCGTCGGGATTTTG
CTTCTTACCGAGAGCGACAAACATTTTCGTGCTTACTCTTCTACTTCTGT
TTCTCCAATACCCCCCATATGCCCCCAATACCCTCCATATGCCTCCGCTT
GCGTCGCTTTTTTTTTCAAACAGATGATCTCGGTTGCCGCATGCGCTTCC
GAGCACTGGATCCCTGGCGCCGTACCCGCGCTTACTGGCCAGGGGTACTA
GAACGTTCGACTCATTAATTATCGATTTAGTCTAGGTTATGGTGTTTTCT
CGCCATCGTTTGTCAACAAGTCAAAGGTCATAAAGGGATGGATGAAGAGA
GTAGGTTGTCGTAATGTTTTTCCCTCCGAATGGATCCTCAACTAGTTGGC
GTGCCTGACACCCTTCGTCGTTGTATCGTCATCTGATACCTTCTGCGGGG
AAAAGAGGTGGTACCCTTTCGTGTCGAGGGAGGAAACAATAAGTTGGATG
CGTCAACCACACGTTCGTATTTTATGGTCTTCTAACCAAGTAGTTCTCGT
CGTGTGTCACCTCGAGAAGATTTTGACTTCCGAGTTGCTGTAGCACATGT
AGCATGTTTTGCTACACCAATTTGGTCGCCATTTTTTACCACAAATCATG
GACTTTGGTGCCTTCATTCTTGCTGCAAGATTAGTTTTTCACGTCATGAG
CAAGTCGGTTGTGACCACTTGCGAGTAGTTGGAGTGATTGCTATACTATG
GTCGTGGGTTTTACGATGAAACATAATCGGTTGTTGGGTATGCCTCATTA
CAGCAGCCGAGCTTTCAGCAGCAGTGAATGTTCTACTGAGGTTCACGTAA
TAACGTCCATGTGTGACACGCCGTGACTATTAAAGATATAATGCACGAAA
CCCTTTATTGGATTACTTGAAAATTCTCAAATGACGTGTTTCCTTGTGTA
AGGTGGTCACATCAGAGATTCCGTGGAATGAAAAGTCATGAATTTCGCGC
GATGTGTCAAGGGTAAACCCACGTGTTTTGAGTATGATTCCCAACTCTTA
ATGATTCAAGGATAGTACTAAGAAATTCGAAATGAACGATTGTTGCTCAA
GGTGATACTGCGTAAAAAGCGATTTGAGATTAGTGAAAACTTCACAACCC
GGAGAGAGGTTAGAGAAGTAAGCAATACGCAACGACACCGTCATTCCTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig5569:4443..11492+

>mRNA_H-paniculata_contig5569.13072.1 ID=mRNA_H-paniculata_contig5569.13072.1|Name=mRNA_H-paniculata_contig5569.13072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig5569:4443..11492+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTCGCAGCTGCTGTTACTGTCGCCTCTCTCGGCATGACAACCGC
GTTCGTTACCCCTGGCGCACTTCGCCCCAGCAGCGCCATGCAGAGGTCGC
AGATGAAGGTCGCAGCTGCTGTTACTGTCGCCTCTCTCGGCATGACAACC
GCGTTCGTTACCCCTGGCGCACTTCGCCCCAGCAGCGCCATGCAGAGGTC
GCAGGCATCTAAGTCGGCGACTTCGATGAGCAGCGTTGACGGAATGATCG
GTGTATCTTACGAGATGGGGGAGAAGGTGTTTGACCCCCTTGGCTTGTCG
GATCTCCACTCGGTTGCACCGCTCGTACAACCCCACCCAAAGGCATCTAA
GTCGGCGACTTCGATGAGCAGCGTTGACGGAATGATCGGTGTATCTTACG
AGATGGGGGAGAAGGTGTTTGACCCCCTTGGCTTGTCGGATCTCCACTCG
GTTGCACCGCTCGTACAACCCCACCCAAAGTGGCTTCAGGAGGCGGAGAT
CAAGCACTGCCGCATCTGCATGTTGGCCTTCGTAGGGATCTGGGTGGCTT
CAGGAGGCGGAGATCAAGCACTGCCGCATCTGCATGTTGGCCTTCGTAGG
GATCTGGGCTGCGCAATCAGGGTTTCATTTCCCCGGACTCGGGTACGAAG
CGGTGCCGTGGTACGACCAATTCAATGAGTTCGCGAGCAAGAACCCTGGA
GGGCTTGCACAGCTGCGCAATCAGGGTTTCATTTCCCCGGACTCGGGTAC
GAAGCGGTGCCGTGGTACGACCAATTCAATGAGTTCGCGAGCAAGAACCC
TGGAGGGCTTGCACAGCTCATGTTGTTCTTTGCGACCGCGGAGGGTGTGA
ACTACTGCGGTGACTTCTGGAACGGGGGTGGGGACCGTGAAGCTGGGGAC
CTGGGACTTTACTTGAAGAAGCCCTCATGTTGTTCTTTGCGACCGCGGAG
GGTGTGAACTACTGCGGTGACTTCTGGAACGGGGGTGGGGACCGTGAAGC
TGGGGACCTGGGACTTTACTTGAAGAAGCCGACCGGAAAGGACTTCGACA
CTCTCCGGCTGCAGGAGCTCAAGAACGGCCGGCTGGCGGACCGGAAAGGA
CTTCGACACTCTCCGGCTGCAGGAGCTCAAGAACGGCCGGCTGGCGATGA
TCTCGGTTGCCGCATGCGCTTCCGAGCACTGGATCCCTGGCGCCGTACCC
GCGCTTACTGGCCAGGGGTACTAGATGATCTCGGTTGCCGCATGCGCTTC
CGAGCACTGGATCCCTGGCGCCGTACCCGCGCTTACTGGCCAGGGGTACT
AG
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