mRNA_H-paniculata_contig5562.13063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5562.13063.1
Unique NamemRNA_H-paniculata_contig5562.13063.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A6H5KIH1_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIH1_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 6.990e-106
Identity = 187/308 (60.71%), Postives = 220/308 (71.43%), Query Frame = 1
Query:   13 PQGPAPSXXXXXXXGSLTQVVLKFTTVPDDGDAPSFFTVGREGATVGRGPGNDICIPSDACMGESDHASIVWQDGAFHVQDRGYRYGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKIDEEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTIS---IADRELSRHHSRLECQEG--SMYISG------GSSVTGASDD-----------------------DGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQVM 834
            P G APS       GSL++V+LKFTTV D  +A SF TV REGATVGRG  NDICIP+D+CMGES+HASIVW++GAFHV+DRG  YGASVRIG G G+R+WPL  G++FSAGNSVF   +IDE+ GMLLEIVAGPLKGQKRRV + GA +GRATE+TI    IADRELSR+HS +EC +   S+  SG      G +  G  DD                        G+        E++LCDVGSTNGT+VQ LVGPYA+SRRL+LSD ILIGRTGFSINR+DWG WEDRG+RR+MEDKSVVIQ M
Sbjct:  313 PAGAAPSAP-----GSLSEVILKFTTVADGNEASSF-TVKREGATVGRGSCNDICIPNDSCMGESEHASIVWREGAFHVEDRGLPYGASVRIGTGRGVRDWPLDQGAMFSAGNSVFHTTEIDEDKGMLLEIVAGPLKGQKRRVQKDGANIGRATESTIRHIIIADRELSRNHSTIECDDNARSLCSSGWASSGDGGADAGGGDDRRSAEAKKDGMLDLSTAESVDGKSGQGEAGGGRTEFYLCDVGSTNGTYVQ-LVGPYANSRRLQLSDHILIGRTGFSINRYDWGVWEDRGARRSMEDKSVVIQDM 613          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7S0XEJ1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEJ1_9STRA)

HSP 1 Score: 219 bits (559), Expect = 9.820e-64
Identity = 123/259 (47.49%), Postives = 168/259 (64.86%), Query Frame = 1
Query:   58 SLTQVVLKFTTVPDD-GDAPSFFTVGREGATVGRGPGNDICIPSDACMGESDHASIVWQDGAFHVQDRGYRYGASVRIGKGTGLR-EWPLRVGSVFSAGNSVFQIRKIDEEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLECQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQ 828
            +L ++VLKFTTV +   +APSF TV  +GA +G G  N+I IPSD  + +  HA+I +  G+F++ D GY   AS+RIG GTG R  W L   + FSAGNSVF    IDE+  ++L+++ GPLK +KR V + GA+ GR++ENTIS+ DRELSR HSRLE                      ++R++K    Y +CDVGSTNGT++Q LVGPYA   +L L+D IL+GRTGFS+NR+D+G  E+ G R  MED   ++Q
Sbjct:   89 TLNKIVLKFTTVSESCNEAPSF-TVSTKGANIGSGSTNEIYIPSDLRLNKDAHATINYSKGSFYICDNGYDNPASIRIGVGTGHRMTWYLENNARFSAGNSVFCSEGIDEDGNLVLKVLEGPLKNEKRVVTKRGASFGRSSENTISVPDRELSRKHSRLEY---------------------DQRVNK----YLVCDVGSTNGTYMQ-LVGPYAGPFKLSLTDHILVGRTGFSVNRYDYGLSEEIGFRPTMEDACTIVQ 320          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7S1UBQ7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBQ7_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.640e-61
Identity = 115/258 (44.57%), Postives = 165/258 (63.95%), Query Frame = 1
Query:   61 LTQVVLKFTTVPDDGDAPSFFTVGREGATVGRGPGNDICIPSDACMGESDHASIVWQDG--AFHVQDRGYRYGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKIDEEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLECQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQ 828
            L ++VLKFTT+ +  +AP+F  VG  GA++GR P N++ +P+DA +    HA I ++    AF+++D G+ +GA++RI  G+GLR+W L+  +VFSAGNS F++   D    +LLE+ +GPLKG++RRV   GAT+GR   N  SI D+ELSR H  +E +                DD            +++CDVGSTNGT++  LVGPY    RL LSD IL+GRTGFS+NR+D+G  E+ G R++MED  V+IQ
Sbjct:  168 LEEIVLKFTTLSEGNEAPAFL-VGMGGASIGRDPTNEVSVPTDATLEPERHAVIEYRADRQAFYLRDMGHDHGAAIRIEAGSGLRQWRLQENAVFSAGNSSFKVVTCDASS-VLLEVGSGPLKGERRRVGEKGATLGRHNNNEFSIPDKELSRRHCCIEFEP--------------KDD-----------SFYICDVGSTNGTYMH-LVGPYRGLWRLSLSDHILVGRTGFSVNRYDFGVSEEMGRRQSMEDAHVLIQ 397          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7S1XX31_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX31_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.540e-59
Identity = 115/258 (44.57%), Postives = 165/258 (63.95%), Query Frame = 1
Query:   61 LTQVVLKFTTVPDDGDAPSFFTVGREGATVGRGPGNDICIPSDACMGESDHASIVWQDG--AFHVQDRGYRYGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKIDEEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLECQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQ 828
            L ++VLKFTT+ +  +AP+F  VG  GA++GR P N++ +P+DA +    HA I ++    AF+++D G+ +GA++RI  G+GLR+W L+  +VFSAGNS F++   D    +LLE+ +GPLKG++RRV   GAT+GR   N  SI D+ELSR H  +E +                DD            +++CDVGSTNGT++  LVGPY    RL LSD IL+GRTGFS+NR+D+G  E+ G R++MED  V+IQ
Sbjct:  168 LEEIVLKFTTLSEGNEAPAFL-VGMGGASIGRDPTNEVSVPTDATLEPERHAVIEYRADRQAFYLRDMGHDHGAAIRIEAGSGLRQWRLQENAVFSAGNSSFKVVTCDASS-VLLEVGSGPLKGERRRVGEKGATLGRHNNNEFSIPDKELSRRHCCIEFEP--------------KDD-----------SFYICDVGSTNGTYMH-LVGPYRGLWRLSLSDHILVGRTGFSVNRYDFGVSEEMGRRQSMEDAHVLIQ 397          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: W7U755_9STRA (Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U755_9STRA)

HSP 1 Score: 208 bits (530), Expect = 9.730e-58
Identity = 108/256 (42.19%), Postives = 165/256 (64.45%), Query Frame = 1
Query:   61 LTQVVLKFTTVPDDGDAPSFFTVGREGATVGRGPGNDICIPSDACMGESDHASIVWQDGAFHVQDRGYRYGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKIDEEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLECQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQ 828
            + +++LKFTT   D +  S F +G+ G ++GR   N + +PSD+ + E  HA I ++ G+F++++ G  + A++R+G    +R+WPL  G+ FSAGNS+F + +I   + M+ E++ GPLKG++  V + GAT+GR+ +NT+SIAD ELSR HSR+E +E                         +  +Y+L DVGSTNGT++Q L GPYA +  L L D I++GRTGFSINR+D+G  E+RG R+ MED ++VIQ
Sbjct:  491 VDKLILKFTTYSQDKEH-SAFVIGKGGGSIGRDVKNTVSVPSDSTLQEDSHAFIGFKAGSFYIKNLGVTHCAAIRVGAEPVVRDWPLVRGATFSAGNSIFLVVEITPTE-MVAEVIDGPLKGERLEVSQKGATLGRSPDNTLSIADPELSRRHSRIEYEE-------------------------KDGKYYLSDVGSTNGTYMQ-LAGPYAKAYNLSLGDEIMVGRTGFSINRYDYGISEERGRRKTMEDHTLVIQ 718          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7S2FV88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV88_9STRA)

HSP 1 Score: 201 bits (510), Expect = 2.260e-57
Identity = 108/261 (41.38%), Postives = 158/261 (60.54%), Query Frame = 1
Query:   61 LTQVVLKFTTVPDDGDAPSFFTVGREGATVGRGPGNDICIPSDACMGESDHASIVWQDGAFHVQDRGYRYGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKID--EEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLE-CQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQVM 834
            + ++VLKFTT+  DG+  + F +   G T+GRG  N +C+PSD  + +  HA + + +G F + D    Y A+VR+G G   + WPL   + FS+GNS+F++  ++      + L +  GP KG+   V + GAT+GRAT+NT+ I DRELSR HSR+   +EG +                          +++ D+GSTNGT+VQ LVGPYA    L L+D IL+GRTGFS+NRFD+G  E+ G RR+MEDKS+++Q M
Sbjct:    1 VDRLVLKFTTL-SDGNEKASFCLDARGGTIGRGLENHVCVPSDTTLAKLRHACVEYSNGEFQLVDTSSDYHAAVRVGVGRAAQAWPLTKTAAFSSGNSIFEVVDVELHPTPAVSLAVRTGPRKGETLVVGKDGATLGRATDNTVCIPDRELSRRHSRVSFSKEGDVP------------------------SFYISDLGSTNGTYVQ-LVGPYAGRYPLHLNDHILVGRTGFSVNRFDFGISEETGMRRSMEDKSIMVQDM 235          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7S2GBR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GBR9_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.650e-57
Identity = 113/264 (42.80%), Postives = 158/264 (59.85%), Query Frame = 1
Query:   58 SLTQVVLKFTTVPDDGDAPSFFTVGREGATVGRGPGNDICIPSDACMGESDHASIVWQDGAFHVQDRGYR-YGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKIDEEDG--MLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRL--ECQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQVM 834
            S+T++VLKFTT+  DG   + F V + G T+GR P N+I +PSD  + +  HASI   DGAF + D     Y A+VR+G G     W L   + FSAGNS+FQ+  + + D   + + ++ GP K +   V R GAT+GRAT NT+ I+DRELSR HS++  +  +G+ Y+S                           D+GSTNGT+VQ LVGPYA    L ++D IL+GRTGFSINR+D+   E+ G R+ MEDKS+++Q M
Sbjct:   11 SVTKLVLKFTTL-SDGSEKASFCVDQRGGTIGRSPDNNISVPSDMTLAKVRHASIEHSDGAFELVDANTNEYHAAVRVGVGRSASAWLLAKDAAFSAGNSIFQVMDVQQGDNPRLTVTVLTGPRKNETLCVTRQGATLGRATVNTVCISDRELSRRHSKVSYDAVDGNFYVS---------------------------DLGSTNGTYVQ-LVGPYAGRYPLHVNDHILVGRTGFSINRYDFAVSEEMGMRKTMEDKSIMVQDM 245          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7S3YCX7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCX7_HETAK)

HSP 1 Score: 167 bits (424), Expect = 2.620e-48
Identity = 93/199 (46.73%), Postives = 119/199 (59.80%), Query Frame = 1
Query:  241 FHVQDRGYRYGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKID---EEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLECQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQ 828
            FH+ D G   GA+V+IGKG   REWPL V S FSAGNSV  +   D   +E  + L I  GPLKG++R++ + GA +GRATEN +SI DRELSR HS +                             R  +++LCDVGSTNGT++Q LVGPY    RL L D +L+GRT FS+NRFD+G  E+ G RR MED+  + Q
Sbjct:    6 FHLHDLGQPLGAAVQIGKGIEDREWPLIVNSAFSAGNSVLVVESADLNGDEPMIWLRIEEGPLKGERRKITKEGAALGRATENALSIPDRELSRRHSLIV-------------------------HDPRRRQFYLCDVGSTNGTYMQ-LVGPYGRPYRLSLQDNVLVGRTCFSVNRFDYGLSEEIGMRRTMEDRYTLEQ 178          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7S4DEC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEC0_HETAK)

HSP 1 Score: 149 bits (376), Expect = 1.600e-39
Identity = 80/151 (52.98%), Postives = 100/151 (66.23%), Query Frame = 1
Query:  376 DEEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLECQEGSMYISGGSSVTGASDDDGEERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFSINRFDWGAWEDRGSRRAMEDKSVVIQ 828
            D E  + LE+ +GPL+G++RRV R GA +GRAT+N IS+AD+ELSR HS +E   G           GA               YFLCDVGSTNGT++Q LVGPYA+S +L  SD IL+GRTGFSINRFD+G  E+ G R  MEDKS++IQ
Sbjct:    4 DAEPALFLEVTSGPLRGERRRVGREGAALGRATDNAISVADKELSRRHSLVEYDRG----------RGA---------------YFLCDVGSTNGTYMQ-LVGPYANSYKLTFSDHILVGRTGFSINRFDYGVSEEIGRRPNMEDKSIIIQ 128          
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Match: A0A7R9U1S5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1S5_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.140e-38
Identity = 68/133 (51.13%), Postives = 100/133 (75.19%), Query Frame = 1
Query:  139 GATVGRGPGNDICIPSDACMGESDHASIVWQDG--AFHVQDRGYRYGASVRIGKGTGLREWPLRVGSVFSAGNSVFQIRKIDEEDGMLLEIVAGPLKGQKRRVHRGGATVGRATENTISIADRELSRHHSRLE 531
            GA++GRGP N++ +P+D  +    HA IV++    AF+++D G  +GA+VRI  GTGLR+W L   ++FSAGNS F++ + D+  G+L+E+ AGPLKG++RRV + GA++GRAT+N +SI DRELSR HSR+E
Sbjct:    2 GASIGRGPANEVAVPTDTTLEADKHAMIVYKHDRKAFYLKDMGLEHGAAVRIEAGTGLRQWRLSENALFSAGNSSFKVVESDDT-GVLIEVGAGPLKGERRRVTQKGASLGRATDNVLSIGDRELSRRHSRIE 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5562.13063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIH1_9PHAE6.990e-10660.71PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S0XEJ1_9STRA9.820e-6447.49Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S1UBQ7_9STRA2.640e-6144.57Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1XX31_9STRA2.540e-5944.57Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7U755_9STRA9.730e-5842.19Protein phosphatase 1b2 53 kDa isoform n=2 Tax=Mon... [more]
A0A7S2FV88_9STRA2.260e-5741.38Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2GBR9_9STRA3.650e-5742.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3YCX7_HETAK2.620e-4846.73Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DEC0_HETAK1.600e-3952.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9U1S5_9STRA1.140e-3851.13Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5562contigH-paniculata_contig5562:9504..13526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.4
Seed ortholog evalue5.1e-92
Seed eggNOG ortholog2880.D7G1B3
KEGG koko:K01090
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons4
Model size834
Cds size834
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5562.13063.1prot_H-paniculata_contig5562.13063.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5562 9504..13526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.1780133-CDS-H-paniculata_contig5562:9503..98711622930586.1780133-CDS-H-paniculata_contig5562:9503..9871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 9504..9871 +
1691481360.0013027-CDS-H-paniculata_contig5562:9503..98711691481360.0013027-CDS-H-paniculata_contig5562:9503..9871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 9504..9871 +
1622930586.199658-CDS-H-paniculata_contig5562:10403..105231622930586.199658-CDS-H-paniculata_contig5562:10403..10523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 10404..10523 +
1691481360.0185258-CDS-H-paniculata_contig5562:10403..105231691481360.0185258-CDS-H-paniculata_contig5562:10403..10523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 10404..10523 +
1622930586.2171316-CDS-H-paniculata_contig5562:12670..128541622930586.2171316-CDS-H-paniculata_contig5562:12670..12854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 12671..12854 +
1691481360.037389-CDS-H-paniculata_contig5562:12670..128541691481360.037389-CDS-H-paniculata_contig5562:12670..12854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 12671..12854 +
1622930586.2322173-CDS-H-paniculata_contig5562:13364..135261622930586.2322173-CDS-H-paniculata_contig5562:13364..13526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 13365..13526 +
1691481360.0577083-CDS-H-paniculata_contig5562:13364..135261691481360.0577083-CDS-H-paniculata_contig5562:13364..13526Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5562 13365..13526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5562.13063.1

>prot_H-paniculata_contig5562.13063.1 ID=prot_H-paniculata_contig5562.13063.1|Name=mRNA_H-paniculata_contig5562.13063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=278bp
AAAPPQGPAPSAPAPTAPGSLTQVVLKFTTVPDDGDAPSFFTVGREGATV
GRGPGNDICIPSDACMGESDHASIVWQDGAFHVQDRGYRYGASVRIGKGT
GLREWPLRVGSVFSAGNSVFQIRKIDEEDGMLLEIVAGPLKGQKRRVHRG
GATVGRATENTISIADRELSRHHSRLECQEGSMYISGGSSVTGASDDDGE
ERLSKRHVEYFLCDVGSTNGTFVQQLVGPYASSRRLELSDRILIGRTGFS
INRFDWGAWEDRGSRRAMEDKSVVIQVM
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mRNA from alignment at H-paniculata_contig5562:9504..13526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5562.13063.1 ID=mRNA_H-paniculata_contig5562.13063.1|Name=mRNA_H-paniculata_contig5562.13063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4023bp|location=Sequence derived from alignment at H-paniculata_contig5562:9504..13526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCAGCTCCCCCACAAGGTCCGGCACCTTCGGCGCCCGCGCCGACCGC GCCCGGGTCCCTGACGCAAGTAGTCCTCAAGTTCACCACGGTTCCGGATG ATGGCGACGCTCCCAGCTTCTTCACAGTTGGCCGGGAGGGGGCCACGGTG GGCAGGGGCCCGGGCAACGATATTTGCATCCCGAGCGACGCGTGCATGGG CGAGTCGGATCACGCAAGTATCGTGTGGCAGGATGGGGCCTTTCACGTGC AGGATCGGGGATACCGGTACGGCGCGTCTGTGCGCATCGGCAAGGGGACT GGGTTACGAGAGTGGCCTTTGCGAGTGGGCTCGGTGTTTTCGGCGGGCAA CAGTGTCTTCCAGATAAGGTGAGTTACGCTACGGTGTCATACTCCGTGTA CCACTGAGATGATATGTCTTCACCTCTCTTCGTTTCTTCTTTCCCCCTGA CACAAATGTACGGAGACAGCCGTACTGGGATTAGCTTTGCGGCTGCAGGT GAATTTGAGGGGTTTGAGGCAAGGGGTTCGTCGAGGTCTCCGCTGGACTG TCTTGGTTGCTGAGGCTGTAGTATGCTCTAGTCGACTCTTGGATTCTGTT GTGGTTGTTGTTGTTGTTGTGTTTTGATTGAGAAAATAGACAGGACACTT GGAAAAGGGGTTAAAAACTCAATATAGACGAAGCCTCCACTTCATCCCAA GCGCCAAAATCCTGTTCATATTGGGTGAGGATGATGGGAGTGAGATCCAT GGATGTCCAAAGGATAAAAGGGATGCGGTCAAAATGACGGCATCGAAAGG CGACAAGATATATGCTGTGGACTGGACTCAAAAAATGACGATTTCGTTCG TGTCCCGTGTTTCACGTTTCGGTGTCGCTACGCAAACTAAACCACACTAG GAAAATAGACGAGGAGGACGGCATGCTGCTGGAGATCGTTGCCGGACCTT TGAAAGGCCAGAAGCGGAGGGTGCATAGGGGAGGAGCTACGGTCGGACGA GCCACCGAAAACACGATTAGGTACAGTTGGTGCAGCAGGAGTCGAAAGCC CTGGCAAGCGGGATTTGGAGAACATCATGTAACGAAAACCAGTTTCTCGC CTGTTACTGGTGTTGATGAGCCCATGCAGGTTCGGAGTTCAGAATCGTAA CCTCAGCGTGACATCCATTGTCATTTTCCATGGTCTGAACATTCATGACA CGAACTAAATTTTTGGTATGTAGTGCACCCAAATGTCACACGAACGAACA GCAAGCGAAAATGTAAACGACTGTCCGTTCATCCTTTCTGTTGAAGTTGG TACCCGCGATAGCGTCGAAAGTTATCAACCCTTGATCCTGCTGGACGAAG TATGCACTACAACAGCATCAAAATATACCCAAGTACCGTTCAATCAACAA CGGACTCAGCAGCGGCGTAGATGTATGGGGGTTTCTCATAACCTGAAATG TGCTGCACCAGACAATGCTATCTTGCTGCTTGTGCTGCACTCAGCAAAGA CCTGGAGGAGCCTGAATGTTTCGTCTTCGTCTCGGTCATGTCCAGTGAAG AAGCCATGCGATTCACATCTCTCTGTGTTCGTTCCAGTCAAATCGTGCAC GATACAATCCTCTCGGACACAACCTCACACTCCCCTCCCCCTCCTGAAAT GAACATTACGATTGATGGTGTGACCACGTGTACTGTGTCACATTAAGTAC AGTTCACATGCGCGGTAGAAGTTAGGCTTGTTTGCCAGCAAGCGACCAGC GCCAAGCATCAAGCAAATATGCTAGGGAGATCAACTGTATCTCTGTTCGC ATTGATTATGTCGTGGAATCAGAAGGATCGTATCATAGATCCGAGCTGAA CCAATCTATGAAGCCCCCACACAAACAGTAAACTCAGTGAGTGTATCACG CACACCTCCCTCATATGAGTACCAGACATGTTCAGGAAGTCGCGTCGATG AGATTAAAGTGTGCGGCCGGATTCCCATTGACCTACGAAGATTGGCTTAT ATGTGGTATAGCCAGCTGACAGACAGTCAGCCCCCAACGAACTGTTGTTC ACGGCAGCGCCGTGTTTGCACCGAATTCGATGCTACCCCTCCCCGATTTT GTACTGCGAAGGGCTAGGTGCAAGGGCTACCTCATTTCTATAGACAGTAT GTCGTTAGTCCCTCGTGATGGTGTCGCTGACGGCAGCACAGCACATGGAC ACTAGCGTGAGCTGGTGAGACGTTTACACAGGGATGTGGTGAGGTGTCAA AATCTCAAAAATATTCAGCCAGCCCAAAATGAGAATGTGGACTAGTGCTG CAGTAGAGAAGAGGAAAGTCCGACAGCCATTTCGCAGCGAGCACGCCATC GCAGCTTTCGCACCAAACGTAAAATACCAGCCGATTGTCGTCTGTAGTGT TGGTCTTGTCGGTAAACACTCCAACCAAGATACTGACGAAACAAAAATCG ACATGCTGAGCCGTTTGTGTGCAGCCAAATTGCAGCGAACGCGCGAGCGA TCAGGGGTATCTCTGATCTTGCATAGATAGCTTCTGTCATTTTGAAGCGG GGCGTATGATATCATGTCATCTATTGCATGAGGAAGTAAGATCTCGACAA ATTCACTCACTTCAGCGTCGCTTACGAATGATAAAAATACAAATTCGTGG ATCAATCATGTCAACGCGAGGATGGGCGTGCCTTATGGGTTAAGAGTTGG AAACCACAGTCCAAGTGGTGAACGTGTTGCGTCATGGCACCAACACCGAA TTCCAGGCGCCGCCGAATCCGCGGCTTCGAGTACCTGGGTGTATAGATGT CAAGCGACAACTTAGACTCCGACATGGCTAACATATAGAGTATGACTGTG TGCTCATGTATCTCACGCATAAAAAATGCATACGAGAGCAACTCGAATGC TCAGCTTCACTCATTACTTGCTAGTGTTGCAGTCCGGCCCATGCTGTTTC CTTGAATATTAAATAATTCTTGATTGAAAAAATGGAAGGAAAGAACTGAG GCTGCCTCGAGTTTTCTAAAAATAGAAATGGTGTTTGACGTAGAAAATGA TATAAGAGACGTCTTGGCAGTTGAATATCTTCGCTGCATTTTTTTTTTCT TCATTTTGATACTGTCTTCTGATACTCTGCTTATCCTCCCCCCTCCCCCT CCTGCCCCTGCCCGTAGCATCGCCGACCGAGAACTCTCACGGCACCACAG CAGATTGGAGTGTCAGGAAGGCAGTATGTACATCAGCGGCGGTAGCAGCG TCACAGGAGCGTCGGATGATGATGGAGAGGAGAGACTAAGCAAACGTCAC GTGGAATACTTTTTATGCGACGTAGGAAGCACGAACGGCACTTTTGTTCA GGTGCGCTAAAGGACATGACGATTATTACTGTATCTGTGATGTTCGGTTG GGGGCGGAGCGTTTTGATTCATGTTATGTTTTCGGGGAAACTAACACTAG TTGTTAACTCGTTTCCCTTGTATTTATCGTATTTTATTCGCGATTTCCCA AACATGACTCTCCGTTAGTGTTTCGTTTGTTGCTTAGTCAGGGTCTCTAG CTTCGTTGCATCGAAAGTAGGGTTCTTGTTCTCGAGGACTAACAAAAAAA CATGTCAACGTGTTTCTGTCCATCCAATCATCTGGAACGGTCTCACCCCA AGAAACGCAGGATGAGGGTATTTTGCAACGAAAAATAAATCTTTACAACG CTATTGGTCGAGCGCGTTGTTCCTTGTGCTGAGGAACATGCCAACGCTCT GCATGTGTAGTATATCTGTGTCTGTACTGCACTGGACTTTTAGTTTCCAT GTCGAAGAGGTGTAACGTATATCCCCACCTCCTTATTTGTGCCTTCGGGT CACGGCTTGAGCAGCTGGTGGGGCCGTACGCCAGCAGTCGCCGCTTGGAG TTGAGCGACCGTATTCTTATCGGCCGAACGGGCTTCAGTATCAACCGCTT TGACTGGGGTGCGTGGGAGGACCGAGGTTCGCGTAGAGCCATGGAGGACA AGTCAGTCGTGATACAGGTGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig5562:9504..13526+

>mRNA_H-paniculata_contig5562.13063.1 ID=mRNA_H-paniculata_contig5562.13063.1|Name=mRNA_H-paniculata_contig5562.13063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at H-paniculata_contig5562:9504..13526+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCAGCTCCCCCACAAGGTCCGGCACCTTCGGCGCCCGCGCCGACCGC
GCCCGGGTCCCTGACGCAAGTAGTCCTCAAGTTCACCACGGTTCCGGATG
ATGGCGACGCTCCCAGCTTCTTCACAGTTGGCCGGGAGGGGGCCACGGTG
GGCAGGGGCCCGGGCAACGATATTTGCATCCCGAGCGACGCGTGCATGGG
CGAGTCGGATCACGCAAGTATCGTGTGGCAGGATGGGGCCTTTCACGTGC
AGGATCGGGGATACCGGTACGGCGCGTCTGTGCGCATCGGCAAGGGGACT
GGGTTACGAGAGTGGCCTTTGCGAGTGGGCTCGGTGTTTTCGGCGGGCAA
CAGTGTCTTCCAGATAAGGCCGCAGCTCCCCCACAAGGTCCGGCACCTTC
GGCGCCCGCGCCGACCGCGCCCGGGTCCCTGACGCAAGTAGTCCTCAAGT
TCACCACGGTTCCGGATGATGGCGACGCTCCCAGCTTCTTCACAGTTGGC
CGGGAGGGGGCCACGGTGGGCAGGGGCCCGGGCAACGATATTTGCATCCC
GAGCGACGCGTGCATGGGCGAGTCGGATCACGCAAGTATCGTGTGGCAGG
ATGGGGCCTTTCACGTGCAGGATCGGGGATACCGGTACGGCGCGTCTGTG
CGCATCGGCAAGGGGACTGGGTTACGAGAGTGGCCTTTGCGAGTGGGCTC
GGTGTTTTCGGCGGGCAACAGTGTCTTCCAGATAAGGAAAATAGACGAGG
AGGACGGCATGCTGCTGGAGATCGTTGCCGGACCTTTGAAAGGCCAGAAG
CGGAGGGTGCATAGGGGAGGAGCTACGGTCGGACGAGCCACCGAAAACAC
GATTAGGAAAATAGACGAGGAGGACGGCATGCTGCTGGAGATCGTTGCCG
GACCTTTGAAAGGCCAGAAGCGGAGGGTGCATAGGGGAGGAGCTACGGTC
GGACGAGCCACCGAAAACACGATTAGCATCGCCGACCGAGAACTCTCACG
GCACCACAGCAGATTGGAGTGTCAGGAAGGCAGTATGTACATCAGCGGCG
GTAGCAGCGTCACAGGAGCGTCGGATGATGATGGAGAGGAGAGACTAAGC
AAACGTCACGTGGAATACTTTTTATGCGACGTAGGAAGCACGAACGGCAC
TTTTGTTCAGCATCGCCGACCGAGAACTCTCACGGCACCACAGCAGATTG
GAGTGTCAGGAAGGCAGTATGTACATCAGCGGCGGTAGCAGCGTCACAGG
AGCGTCGGATGATGATGGAGAGGAGAGACTAAGCAAACGTCACGTGGAAT
ACTTTTTATGCGACGTAGGAAGCACGAACGGCACTTTTGTTCAGCAGCTG
GTGGGGCCGTACGCCAGCAGTCGCCGCTTGGAGTTGAGCGACCGTATTCT
TATCGGCCGAACGGGCTTCAGTATCAACCGCTTTGACTGGGGTGCGTGGG
AGGACCGAGGTTCGCGTAGAGCCATGGAGGACAAGTCAGTCGTGATACAG
GTGATGCAGCTGGTGGGGCCGTACGCCAGCAGTCGCCGCTTGGAGTTGAG
CGACCGTATTCTTATCGGCCGAACGGGCTTCAGTATCAACCGCTTTGACT
GGGGTGCGTGGGAGGACCGAGGTTCGCGTAGAGCCATGGAGGACAAGTCA
GTCGTGATACAGGTGATG
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