mRNA_H-paniculata_contig5555.13056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5555.13056.1
Unique NamemRNA_H-paniculata_contig5555.13056.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5555.13056.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.830e-26
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:  157 ICAVSRPDPEHDFDGKIGSWHVCTVKEAPRTTSRRARG-----------------------ETYEVDDTIDAEWYREWYVNDLLPEAKKKIWWLDGEEVIAQQDGATPRTGKGAPQALNN 447
            I A +RPDP HDFDGKIG W +C ++ A R++ +                           E YE D TIDAEWY++WY++ LLP  K+K+ WL  + V+ QQDGA+P TGKG P+ LN+
Sbjct:  197 IVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNS 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5555.13056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE5.830e-2643.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5555contigH-paniculata_contig5555:11824..12273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930585.3541825-CDS-H-paniculata_contig5555:11823..122731622930585.3541825-CDS-H-paniculata_contig5555:11823..12273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5555 11824..12273 +
1691481359.614372-CDS-H-paniculata_contig5555:11823..122731691481359.614372-CDS-H-paniculata_contig5555:11823..12273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5555 11824..12273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5555.13056.1prot_H-paniculata_contig5555.13056.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5555 11824..12273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5555.13056.1

>prot_H-paniculata_contig5555.13056.1 ID=prot_H-paniculata_contig5555.13056.1|Name=mRNA_H-paniculata_contig5555.13056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MAEHSRQASTQSTLTRRGSTSFAIRKRCECSPGKKKLARSRCSIRVTSPK
CFICAVSRPDPEHDFDGKIGSWHVCTVKEAPRTTSRRARGETYEVDDTID
AEWYREWYVNDLLPEAKKKIWWLDGEEVIAQQDGATPRTGKGAPQALNNP
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mRNA from alignment at H-paniculata_contig5555:11824..12273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5555.13056.1 ID=mRNA_H-paniculata_contig5555.13056.1|Name=mRNA_H-paniculata_contig5555.13056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=450bp|location=Sequence derived from alignment at H-paniculata_contig5555:11824..12273+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGAACATTCACGACAGGCTTCAACACAGTCCACATTGACGAGGCG
TGGTTCCACCTCATTCGCGATCAGGAAAAGGTGCGAATGTTCCCCGGGAA
AGAAAAAGTTGGCTCGATCAAGGTGCAGCATAAGAGTCACATCCCCTAAG
TGTTTTATCTGCGCTGTTTCACGCCCTGATCCTGAACACGACTTCGACGG
AAAGATCGGAAGTTGGCACGTTTGCACCGTGAAAGAGGCACCAAGGACTA
CTTCGCGGCGCGCTAGGGGCGAGACGTACGAGGTCGACGACACCATCGAT
GCAGAATGGTACCGGGAGTGGTACGTCAATGACCTCTTGCCGGAGGCTAA
GAAGAAGATATGGTGGCTCGATGGGGAGGAGGTCATCGCGCAACAAGACG
GCGCGACGCCTCGCACGGGCAAGGGTGCGCCACAGGCCTTAAACAACCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5555:11824..12273+

>mRNA_H-paniculata_contig5555.13056.1 ID=mRNA_H-paniculata_contig5555.13056.1|Name=mRNA_H-paniculata_contig5555.13056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig5555:11824..12273+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGAACATTCACGACAGGCTTCAACACAGTCCACATTGACGAGGCG
TGGTTCCACCTCATTCGCGATCAGGAAAAGGTGCGAATGTTCCCCGGGAA
AGAAAAAGTTGGCTCGATCAAGGTGCAGCATAAGAGTCACATCCCCTAAG
TGTTTTATCTGCGCTGTTTCACGCCCTGATCCTGAACACGACTTCGACGG
AAAGATCGGAAGTTGGCACGTTTGCACCGTGAAAGAGGCACCAAGGACTA
CTTCGCGGCGCGCTAGGGGCGAGACGTACGAGGTCGACGACACCATCGAT
GCAGAATGGTACCGGGAGTGGTACGTCAATGACCTCTTGCCGGAGGCTAA
GAAGAAGATATGGTGGCTCGATGGGGAGGAGGTCATCGCGCAACAAGACG
GCGCGACGCCTCGCACGGGCAAGGGTGCGCCACAGGCCTTAAACAACCCG
ATGGCAGAACATTCACGACAGGCTTCAACACAGTCCACATTGACGAGGCG
TGGTTCCACCTCATTCGCGATCAGGAAAAGGTGCGAATGTTCCCCGGGAA
AGAAAAAGTTGGCTCGATCAAGGTGCAGCATAAGAGTCACATCCCCTAAG
TGTTTTATCTGCGCTGTTTCACGCCCTGATCCTGAACACGACTTCGACGG
AAAGATCGGAAGTTGGCACGTTTGCACCGTGAAAGAGGCACCAAGGACTA
CTTCGCGGCGCGCTAGGGGCGAGACGTACGAGGTCGACGACACCATCGAT
GCAGAATGGTACCGGGAGTGGTACGTCAATGACCTCTTGCCGGAGGCTAA
GAAGAAGATATGGTGGCTCGATGGGGAGGAGGTCATCGCGCAACAAGACG
GCGCGACGCCTCGCACGGGCAAGGGTGCGCCACAGGCCTTAAACAACCCG
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