mRNA_H-paniculata_contig5553.13053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5553.13053.1
Unique NamemRNA_H-paniculata_contig5553.13053.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.580e-45
Identity = 106/275 (38.55%), Postives = 162/275 (58.91%), Query Frame = 1
Query:    7 LYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAVRAVA 831
            ++K K  + GK+ K K R V +GFRQ  GV Y + +SP    ASIR+L+A A + + EL H+D EQAF+++ +D EV++++P       G V +LNK++YGL Q  R +  +   D+  IGF+QS + PC+LR ++ +E    V +HVDDIL +A   +  +     L      K+L + +F++GC   R+R+A  +++ Q   ++S+LERF++ +TS I      PA    D  ++  E EE     +RE VG LMW A  TR D + AVRAVA
Sbjct:  830 VFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDIL-YAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSI------PASPANDN-RSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVA 1096          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: UPI001ED945D8 (uncharacterized protein LOC124187843 n=2 Tax=Neodiprion TaxID=270857 RepID=UPI001ED945D8)

HSP 1 Score: 167 bits (424), Expect = 2.550e-43
Identity = 97/280 (34.64%), Postives = 161/280 (57.50%), Query Frame = 1
Query:    1 KMLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSG-GPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAVRAVAGF 837
            K ++K K    G V ++K R V +G  Q  G+ Y + ++P    +SIR L+A AA+ + E+   DA  AFL+ D+ +EVY+  P+ F +    V +L KAIYGL Q  R WNI+   ++   G +QSK  PC+  K +DE+  + + V+VDD+L+   D  T E    +L+  FK+K++ +A   +G  +TR+R+A K+ LDQ   ++  L +F +      +  +     L++   PK ++E EEM++  Y+EA+GS+++ A  TR D + A+  V+ F
Sbjct:  845 KWVFKTKTDDKGNVLRHKARLVIKGCAQKRGIDYEETFAPVVRYSSIRYLMALAAKHDLEMEQMDAVTAFLQGDLHEEVYMVPPKEF-YTGDKVWRLKKAIYGLKQASRQWNIKLDTELKKAGLQQSKVDPCIYHKTLDEKM-LFLAVYVDDLLIFTNDQVTKENLKNKLKKCFKMKEMGEAHHCVGLRITRDRQAGKIYLDQEKYIKETLAKFNMADCKPAVTPTDPNQKLTKDMSPKNNEEIEEMSRIPYQEAIGSILYVAQGTRPDLSYAINTVSKF 1122          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A6D2HJE2_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJE2_9BRAS)

HSP 1 Score: 164 bits (415), Expect = 3.760e-42
Identity = 97/276 (35.14%), Postives = 152/276 (55.07%), Query Frame = 1
Query:    1 KMLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFE--HFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRV-EKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
            K ++K+K+  DG ++ YK R V +G++QI GV Y + YSP     SIR+LLATAA  + E+   D + AFL   ++++VY+  PE F      G V KL +AIYGL Q  R WN++F + +    F +++  PC+ +K     A   +V++VDDI +   D    +     L   F +KD+ +A + +G  + R+R    + L Q   +  +L RF + +     + MS G +LS+   P T  ERE M++  Y  A+GS+M+    TR D ACA+
Sbjct:  563 KWVFKKKIDMDGNIQIYKARLVAKGYKQIHGVDYDETYSPVAMLKSIRILLATAAYYDYEIWQMDVKTAFLNGKLEEDVYMIQPEGFTSPENAGKVCKLQRAIYGLKQASRSWNLRFDEAIKEFDFIRNEEEPCVYKKT-SGSAVAFLVLYVDDIFLIGNDIPLLKSVKAWLGSCFSMKDMGEAAYILGIRIYRDRLNKLIGLCQDTYIDKVLHRFSMHDSKKGFLPMSHGISLSKTQCPSTHDERERMSRIPYASAIGSIMYAMLCTRPDIACAL 837          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2U251_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U251_SALR5)

HSP 1 Score: 147 bits (372), Expect = 1.020e-36
Identity = 91/273 (33.33%), Postives = 142/273 (52.01%), Query Frame = 1
Query:    4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
            ++++RK    GKV KYK R+V +G+ Q+ GV+YT  ++P    A+IR++LA A  R  +++  D   AFL A +D E+Y++ P     F P  V +L + +YGL Q  R WN      M    F  +    C+ R+       M V V+VDD+L+ A   +    F   +  RFK+KDL   +  +G  V  +RKA  + + Q   ++S+LE F +     +     G  L  G   K + + E +    +RE +GSL++ ATMTR D + AV
Sbjct:  269 VIFRRKCDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRIMLAMAVARGMDVQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPNTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKNSISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 536          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A250X7J3_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7J3_9CHLO)

HSP 1 Score: 142 bits (357), Expect = 1.140e-36
Identity = 93/275 (33.82%), Postives = 150/275 (54.55%), Query Frame = 1
Query:   19 KVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGA-VGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFR-VEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAVRAVAGF 837
            K  + G V ++K R V QG  Q +G    + ++P     S+R LL+ AA++E  L   D + +FL A++D++VYI++P   E      V +L KA+YGL Q  R W  +  D +  +GFKQS+A P +  + ++ + E+ ++ HVDD+L+ A D    +W   QL+G   +KD+  A +Y+G  ++R  K  K+ L QH   + +LE+F  +        +     +SR    K ++E+      +YRE VG+LM+  T TR D A AV  +A F
Sbjct:   29 KKDESGNVLQHKARLVIQGNMQKQGSEQLEVWAPTSKQPSLRFLLSIAAQQEMHLHQMDVKSSFLNAELDEDVYIQLPPELETGGDRQVYQLQKAVYGLKQAPRAWYNKLKDLLAGLGFKQSEADPAVYFQFMNGQLEI-ILTHVDDLLIAAADLNRVQWIKEQLKGLVDIKDMGPASYYLGMEISR--KDGKILLTQHKYTRELLEKFSPMGLRGRDSPLEDKTQISRTAGVKLTEEKAS----KYRETVGALMYLQTGTRPDLAYAVGLLARF 296          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A5S6QJY9_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJY9_TRIMR)

HSP 1 Score: 146 bits (369), Expect = 4.490e-36
Identity = 84/266 (31.58%), Postives = 146/266 (54.89%), Query Frame = 1
Query:    1 KMLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIV-MSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMT 795
            K +++RK+   G VE+YK R V +GF Q  G+ Y++  +P  +   IR LL+ + +    +RH D + A+L   + +E+Y+++PE +EH  G V +L + IYGL Q GR WN      +  +GF++  +  C    V     ++ +VV+VDDIL+   D    +     ++G + + DL +  F +G  + + +  H+L+++Q   ++S+L +F++E        +     LS  D PK+  ER+EM    YRE +GSL++ A  T
Sbjct:  361 KWVFRRKLDSTGSVERYKARLVARGFGQKAGIDYSETNAPVVSLTVIRFLLSLSMQFGWHVRHVDVKSAYLYGKLAEEIYMKLPEGYEHTVGKVARLLRPIYGLKQSGRVWNETLTVFLEKLGFQRQWSSSC----VYVSSNQIIIVVYVDDILLFHSDPKEIDKVVQVMKGEYDIHDLGELSFILGVKIHKMK--HELRMNQSAYIESILRKFKMELCKPASTPLDPSVELSVADCPKSQAERDEMATVPYREMIGSLVYIALST 620          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2UTA7_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UTA7_SALR5)

HSP 1 Score: 146 bits (368), Expect = 4.990e-36
Identity = 91/273 (33.33%), Postives = 141/273 (51.65%), Query Frame = 1
Query:    4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
            ++++RK    GKV KYK R+V +G+ Q+ GV+YT  ++P    A+IR +LA A  R  +++  D   AFL A +D E+Y++ P     F P  V +L + +YGL Q  R WN      M    F  +    C+ R+       M V V+VDD+L+ A   +    F   +  RFK+KDL   +  +G  V  NRKA  + + Q   ++++LE F +     +     G  L  G   K + + E +    +RE +GSL++ ATMTR D + AV
Sbjct:   90 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPNTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKKAISKRFKMKDLGSPDICLGIKVQHNRKARTVTMSQEHYLRNVLESFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 357          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2UF09_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF09_SALR5)

HSP 1 Score: 146 bits (368), Expect = 6.850e-36
Identity = 91/273 (33.33%), Postives = 142/273 (52.01%), Query Frame = 1
Query:    4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
            ++++RK    GKV KYK R+V +G+ Q+ GV+YT  ++P    A+IR +LA A  R  +++  D   AFL A +D E+Y++ P     F P  V +L + +YGL Q  R WN      M    F  +    C+ R+  +    M V V+VDD+L+ A   +    F   +  RFK+KDL   +  +G  V  +RKA  + + Q   ++S+LE F +     +     G  L  G   K + + E +    +RE +GSL++ ATMTR D + AV
Sbjct:  471 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPSTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCNGGKVMWVAVYVDDLLIFADSDSDMAAFKKAISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 738          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2U355_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U355_SALR5)

HSP 1 Score: 146 bits (368), Expect = 7.600e-36
Identity = 91/273 (33.33%), Postives = 141/273 (51.65%), Query Frame = 1
Query:    4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
            ++++RK    GKV KYK R+V +G+ Q+ GV+YT  ++P    A+IR +LA A  R  +++  D   AFL A +D E+Y++ P     F P  V +L + +YGL Q  R WN      M    F  +    C+ R+       M V V+VDD+L+ A   +    F   +  RFK+KDL   +  +G  V  +RKA  + + Q   ++S+LE F +     +     G  L  G   K + + E +    +RE +GSL++ ATMTR D + AV
Sbjct:  788 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPNTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKNSISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 1055          
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2U6Q2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6Q2_SALR5)

HSP 1 Score: 145 bits (366), Expect = 1.070e-35
Identity = 91/273 (33.33%), Postives = 141/273 (51.65%), Query Frame = 1
Query:    4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
            ++++RK    GKV KYK R+V +G+ Q+ GV+YT  ++P    A+IR +LA A  R  +++  D   AFL A +D E+Y++ P     F P  V +L + +YGL Q  R WN      M    F  +    C+ R+       M V V+VDD+L+ A   +    F   +  RFK+KDL   +  +G  V  +RKA  + + Q   ++S+LE F +     +     G  L  G   K + + E +    +RE +GSL++ ATMTR D + AV
Sbjct:  298 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPSTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKKAISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 565          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JB16_9PHAE2.580e-4538.55Integrase catalytic domain-containing protein n=1 ... [more]
UPI001ED945D82.550e-4334.64uncharacterized protein LOC124187843 n=2 Tax=Neodi... [more]
A0A6D2HJE2_9BRAS3.760e-4235.14CCHC-type domain-containing protein n=1 Tax=Microt... [more]
F2U251_SALR51.020e-3633.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A250X7J3_9CHLO1.140e-3633.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QJY9_TRIMR4.490e-3631.58Integrase catalytic domain-containing protein n=1 ... [more]
F2UTA7_SALR54.990e-3633.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2UF09_SALR56.850e-3633.33Integrase catalytic domain-containing protein n=1 ... [more]
F2U355_SALR57.600e-3633.33Integrase catalytic domain-containing protein n=1 ... [more]
F2U6Q2_SALR51.070e-3533.33Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5553contigH-paniculata_contig5553:3439..4275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score136.3
Seed ortholog evalue1.6e-29
Seed eggNOG ortholog5111.M1VW57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size837
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5553.13053.1prot_H-paniculata_contig5553.13053.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5553 3658..4272 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930584.8944776-UTR-H-paniculata_contig5553:3438..36571622930584.8944776-UTR-H-paniculata_contig5553:3438..3657Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5553 3439..3657 -
1691481359.43589-UTR-H-paniculata_contig5553:3438..36571691481359.43589-UTR-H-paniculata_contig5553:3438..3657Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5553 3439..3657 -
1622930584.9307346-UTR-H-paniculata_contig5553:4272..42751622930584.9307346-UTR-H-paniculata_contig5553:4272..4275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5553 4273..4275 -
1691481359.4594111-UTR-H-paniculata_contig5553:4272..42751691481359.4594111-UTR-H-paniculata_contig5553:4272..4275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5553 4273..4275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930584.9138641-CDS-H-paniculata_contig5553:3657..42721622930584.9138641-CDS-H-paniculata_contig5553:3657..4272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5553 3658..4272 -
1691481359.4484813-CDS-H-paniculata_contig5553:3657..42721691481359.4484813-CDS-H-paniculata_contig5553:3657..4272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5553 3658..4272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5553.13053.1

>prot_H-paniculata_contig5553.13053.1 ID=prot_H-paniculata_contig5553.13053.1|Name=mRNA_H-paniculata_contig5553.13053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLL
ATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGAVGKLNKAI
YGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVD
DILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKL
DQHM*
back to top

mRNA from alignment at H-paniculata_contig5553:3439..4275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5553.13053.1 ID=mRNA_H-paniculata_contig5553.13053.1|Name=mRNA_H-paniculata_contig5553.13053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig5553:3439..4275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGATGCTTTACAAACGCAAAGTCAGCAAGGACGGCAAGGTGGAGAAGTA CAAATGTAGATTTGTCACCCAGGGCTTCCGGCAGATCGAAGGGGTGCACT ACACCAAGAAGTACTCACCTCCGCCGGCGACCGCGTCCATCCGGGTGCTC TTGGCGACCGCAGCGGAGAGGGAAGGAGAGTTGCGACATTTCGACGCAGA ACAGGCGTTTCTGAAGGCGGATATTGACGACGAGGTTTACATCGAGATCC CAGAAAGCTTCGAACATTTCCCGGGAGCAGTGGGTAAGCTGAATAAGGCA ATCTACGGGCTCATTCAGGTGGGGCGATGCTGGAACATCCAGTTCTGCGA CGACATGACGCCAATCGGGTTCAAGCAGTCAAAGGCATACCCGTGCATGC TCAGGAAGGTCGTCGACGAAGAGGCGGAAATGGCGGTCGTCGTGCACGTG GACGACATCCTTGTCCACGCAAAAGACTGCGCGACAACGGAGTGGTTCGC AACCCAGCTAAGGGGAAGGTTCAAGCTAAAGGACTTACCTAAAGCCGAGT TCTACATGGGTTGTCACGTTACCCGAAACAGGAAGGCGCACAAGCTAAAA CTCGATCAACACATGTAGGTGCAATCGATGCTGGAAAGATTCCGTGTCGA GAAGACGAGCTGGATAATAGTCATGTCGGGAGGACCAGCACTATCAAGAG GAGACGAACCGAAGACCTCGAAGGAGAGGGAGGAGATGACGAAATTCCAA TATCGAGAGGCAGTGGGGTCACTAATGTGGACGGCGACGATGACTCGCCG GGATAAGGCGTGCGCAGTACGTGCCGTTGCAGGGTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5553:3439..4275-

>mRNA_H-paniculata_contig5553.13053.1 ID=mRNA_H-paniculata_contig5553.13053.1|Name=mRNA_H-paniculata_contig5553.13053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig5553:3439..4275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTTACAAACGCAAAGTCAGCAAGGACGGCAAGGTGGAGAAGTACAA
ATGTAGATTTGTCACCCAGGGCTTCCGGCAGATCGAAGGGGTGCACTACA
CCAAGAAGTACTCACCTCCGCCGGCGACCGCGTCCATCCGGGTGCTCTTG
GCGACCGCAGCGGAGAGGGAAGGAGAGTTGCGACATTTCGACGCAGAACA
GGCGTTTCTGAAGGCGGATATTGACGACGAGGTTTACATCGAGATCCCAG
AAAGCTTCGAACATTTCCCGGGAGCAGTGGGTAAGCTGAATAAGGCAATC
TACGGGCTCATTCAGGTGGGGCGATGCTGGAACATCCAGTTCTGCGACGA
CATGACGCCAATCGGGTTCAAGCAGTCAAAGGCATACCCGTGCATGCTCA
GGAAGGTCGTCGACGAAGAGGCGGAAATGGCGGTCGTCGTGCACGTGGAC
GACATCCTTGTCCACGCAAAAGACTGCGCGACAACGGAGTGGTTCGCAAC
CCAGCTAAGGGGAAGGTTCAAGCTAAAGGACTTACCTAAAGCCGAGTTCT
ACATGGGTTGTCACGTTACCCGAAACAGGAAGGCGCACAAGCTAAAACTC
GATCAACACATGTAGATGCTTTACAAACGCAAAGTCAGCAAGGACGGCAA
GGTGGAGAAGTACAAATGTAGATTTGTCACCCAGGGCTTCCGGCAGATCG
AAGGGGTGCACTACACCAAGAAGTACTCACCTCCGCCGGCGACCGCGTCC
ATCCGGGTGCTCTTGGCGACCGCAGCGGAGAGGGAAGGAGAGTTGCGACA
TTTCGACGCAGAACAGGCGTTTCTGAAGGCGGATATTGACGACGAGGTTT
ACATCGAGATCCCAGAAAGCTTCGAACATTTCCCGGGAGCAGTGGGTAAG
CTGAATAAGGCAATCTACGGGCTCATTCAGGTGGGGCGATGCTGGAACAT
CCAGTTCTGCGACGACATGACGCCAATCGGGTTCAAGCAGTCAAAGGCAT
ACCCGTGCATGCTCAGGAAGGTCGTCGACGAAGAGGCGGAAATGGCGGTC
GTCGTGCACGTGGACGACATCCTTGTCCACGCAAAAGACTGCGCGACAAC
GGAGTGGTTCGCAACCCAGCTAAGGGGAAGGTTCAAGCTAAAGGACTTAC
CTAAAGCCGAGTTCTACATGGGTTGTCACGTTACCCGAAACAGGAAGGCG
CACAAGCTAAAACTCGATCAACACATGTAG
back to top