mRNA_H-paniculata_contig5553.13053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE) HSP 1 Score: 173 bits (439), Expect = 2.580e-45 Identity = 106/275 (38.55%), Postives = 162/275 (58.91%), Query Frame = 1
Query: 7 LYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAVRAVA 831
++K K + GK+ K K R V +GFRQ GV Y + +SP ASIR+L+A A + + EL H+D EQAF+++ +D EV++++P G V +LNK++YGL Q R + + D+ IGF+QS + PC+LR ++ +E V +HVDDIL +A + + L K+L + +F++GC R+R+A +++ Q ++S+LERF++ +TS I PA D ++ E EE +RE VG LMW A TR D + AVRAVA
Sbjct: 830 VFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLSDPCVLRFMMGDEVLGMVAIHVDDIL-YAGTKSLAKVVVEALGDSLPTKNLGEVKFFLGCAFIRDREAGTIEISQESYIRSVLERFKICRTSSI------PASPANDN-RSVMEDEEAGDVPFREVVGCLMWVANGTRPDISNAVRAVA 1096
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: UPI001ED945D8 (uncharacterized protein LOC124187843 n=2 Tax=Neodiprion TaxID=270857 RepID=UPI001ED945D8) HSP 1 Score: 167 bits (424), Expect = 2.550e-43 Identity = 97/280 (34.64%), Postives = 161/280 (57.50%), Query Frame = 1
Query: 1 KMLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSG-GPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAVRAVAGF 837
K ++K K G V ++K R V +G Q G+ Y + ++P +SIR L+A AA+ + E+ DA AFL+ D+ +EVY+ P+ F + V +L KAIYGL Q R WNI+ ++ G +QSK PC+ K +DE+ + + V+VDD+L+ D T E +L+ FK+K++ +A +G +TR+R+A K+ LDQ ++ L +F + + + L++ PK ++E EEM++ Y+EA+GS+++ A TR D + A+ V+ F
Sbjct: 845 KWVFKTKTDDKGNVLRHKARLVIKGCAQKRGIDYEETFAPVVRYSSIRYLMALAAKHDLEMEQMDAVTAFLQGDLHEEVYMVPPKEF-YTGDKVWRLKKAIYGLKQASRQWNIKLDTELKKAGLQQSKVDPCIYHKTLDEKM-LFLAVYVDDLLIFTNDQVTKENLKNKLKKCFKMKEMGEAHHCVGLRITRDRQAGKIYLDQEKYIKETLAKFNMADCKPAVTPTDPNQKLTKDMSPKNNEEIEEMSRIPYQEAIGSILYVAQGTRPDLSYAINTVSKF 1122
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A6D2HJE2_9BRAS (CCHC-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJE2_9BRAS) HSP 1 Score: 164 bits (415), Expect = 3.760e-42 Identity = 97/276 (35.14%), Postives = 152/276 (55.07%), Query Frame = 1
Query: 1 KMLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFE--HFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRV-EKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
K ++K+K+ DG ++ YK R V +G++QI GV Y + YSP SIR+LLATAA + E+ D + AFL ++++VY+ PE F G V KL +AIYGL Q R WN++F + + F +++ PC+ +K A +V++VDDI + D + L F +KD+ +A + +G + R+R + L Q + +L RF + + + MS G +LS+ P T ERE M++ Y A+GS+M+ TR D ACA+
Sbjct: 563 KWVFKKKIDMDGNIQIYKARLVAKGYKQIHGVDYDETYSPVAMLKSIRILLATAAYYDYEIWQMDVKTAFLNGKLEEDVYMIQPEGFTSPENAGKVCKLQRAIYGLKQASRSWNLRFDEAIKEFDFIRNEEEPCVYKKT-SGSAVAFLVLYVDDIFLIGNDIPLLKSVKAWLGSCFSMKDMGEAAYILGIRIYRDRLNKLIGLCQDTYIDKVLHRFSMHDSKKGFLPMSHGISLSKTQCPSTHDERERMSRIPYASAIGSIMYAMLCTRPDIACAL 837
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2U251_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U251_SALR5) HSP 1 Score: 147 bits (372), Expect = 1.020e-36 Identity = 91/273 (33.33%), Postives = 142/273 (52.01%), Query Frame = 1
Query: 4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
++++RK GKV KYK R+V +G+ Q+ GV+YT ++P A+IR++LA A R +++ D AFL A +D E+Y++ P F P V +L + +YGL Q R WN M F + C+ R+ M V V+VDD+L+ A + F + RFK+KDL + +G V +RKA + + Q ++S+LE F + + G L G K + + E + +RE +GSL++ ATMTR D + AV
Sbjct: 269 VIFRRKCDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRIMLAMAVARGMDVQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPNTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKNSISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 536
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A250X7J3_9CHLO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X7J3_9CHLO) HSP 1 Score: 142 bits (357), Expect = 1.140e-36 Identity = 93/275 (33.82%), Postives = 150/275 (54.55%), Query Frame = 1
Query: 19 KVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGA-VGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFR-VEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAVRAVAGF 837
K + G V ++K R V QG Q +G + ++P S+R LL+ AA++E L D + +FL A++D++VYI++P E V +L KA+YGL Q R W + D + +GFKQS+A P + + ++ + E+ ++ HVDD+L+ A D +W QL+G +KD+ A +Y+G ++R K K+ L QH + +LE+F + + +SR K ++E+ +YRE VG+LM+ T TR D A AV +A F
Sbjct: 29 KKDESGNVLQHKARLVIQGNMQKQGSEQLEVWAPTSKQPSLRFLLSIAAQQEMHLHQMDVKSSFLNAELDEDVYIQLPPELETGGDRQVYQLQKAVYGLKQAPRAWYNKLKDLLAGLGFKQSEADPAVYFQFMNGQLEI-ILTHVDDLLIAAADLNRVQWIKEQLKGLVDIKDMGPASYYLGMEISR--KDGKILLTQHKYTRELLEKFSPMGLRGRDSPLEDKTQISRTAGVKLTEEKAS----KYRETVGALMYLQTGTRPDLAYAVGLLARF 296
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: A0A5S6QJY9_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QJY9_TRIMR) HSP 1 Score: 146 bits (369), Expect = 4.490e-36 Identity = 84/266 (31.58%), Postives = 146/266 (54.89%), Query Frame = 1
Query: 1 KMLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHFPGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIV-MSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMT 795
K +++RK+ G VE+YK R V +GF Q G+ Y++ +P + IR LL+ + + +RH D + A+L + +E+Y+++PE +EH G V +L + IYGL Q GR WN + +GF++ + C V ++ +VV+VDDIL+ D + ++G + + DL + F +G + + + H+L+++Q ++S+L +F++E + LS D PK+ ER+EM YRE +GSL++ A T
Sbjct: 361 KWVFRRKLDSTGSVERYKARLVARGFGQKAGIDYSETNAPVVSLTVIRFLLSLSMQFGWHVRHVDVKSAYLYGKLAEEIYMKLPEGYEHTVGKVARLLRPIYGLKQSGRVWNETLTVFLEKLGFQRQWSSSC----VYVSSNQIIIVVYVDDILLFHSDPKEIDKVVQVMKGEYDIHDLGELSFILGVKIHKMK--HELRMNQSAYIESILRKFKMELCKPASTPLDPSVELSVADCPKSQAERDEMATVPYREMIGSLVYIALST 620
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2UTA7_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UTA7_SALR5) HSP 1 Score: 146 bits (368), Expect = 4.990e-36 Identity = 91/273 (33.33%), Postives = 141/273 (51.65%), Query Frame = 1
Query: 4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
++++RK GKV KYK R+V +G+ Q+ GV+YT ++P A+IR +LA A R +++ D AFL A +D E+Y++ P F P V +L + +YGL Q R WN M F + C+ R+ M V V+VDD+L+ A + F + RFK+KDL + +G V NRKA + + Q ++++LE F + + G L G K + + E + +RE +GSL++ ATMTR D + AV
Sbjct: 90 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPNTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKKAISKRFKMKDLGSPDICLGIKVQHNRKARTVTMSQEHYLRNVLESFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 357
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2UF09_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UF09_SALR5) HSP 1 Score: 146 bits (368), Expect = 6.850e-36 Identity = 91/273 (33.33%), Postives = 142/273 (52.01%), Query Frame = 1
Query: 4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
++++RK GKV KYK R+V +G+ Q+ GV+YT ++P A+IR +LA A R +++ D AFL A +D E+Y++ P F P V +L + +YGL Q R WN M F + C+ R+ + M V V+VDD+L+ A + F + RFK+KDL + +G V +RKA + + Q ++S+LE F + + G L G K + + E + +RE +GSL++ ATMTR D + AV
Sbjct: 471 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPSTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCNGGKVMWVAVYVDDLLIFADSDSDMAAFKKAISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 738
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2U355_SALR5 (Integrase catalytic domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U355_SALR5) HSP 1 Score: 146 bits (368), Expect = 7.600e-36 Identity = 91/273 (33.33%), Postives = 141/273 (51.65%), Query Frame = 1
Query: 4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
++++RK GKV KYK R+V +G+ Q+ GV+YT ++P A+IR +LA A R +++ D AFL A +D E+Y++ P F P V +L + +YGL Q R WN M F + C+ R+ M V V+VDD+L+ A + F + RFK+KDL + +G V +RKA + + Q ++S+LE F + + G L G K + + E + +RE +GSL++ ATMTR D + AV
Sbjct: 788 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPNTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKNSISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 1055
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Match: F2U6Q2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6Q2_SALR5) HSP 1 Score: 145 bits (366), Expect = 1.070e-35 Identity = 91/273 (33.33%), Postives = 141/273 (51.65%), Query Frame = 1
Query: 4 MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLATAAEREGELRHFDAEQAFLKADIDDEVYIEIPESFEHF-PGAVGKLNKAIYGLIQVGRCWNIQFCDDMTPIGFKQSKAYPCMLRKVVDEEAEMAVVVHVDDILVHAKDCATTEWFATQLRGRFKLKDLPKAEFYMGCHVTRNRKAHKLKLDQHM*VQSMLERFRVEKTSWIIVMSGGPALSRGDEPKTSKEREEMTKFQYREAVGSLMWTATMTRRDKACAV 819
++++RK GKV KYK R+V +G+ Q+ GV+YT ++P A+IR +LA A R +++ D AFL A +D E+Y++ P F P V +L + +YGL Q R WN M F + C+ R+ M V V+VDD+L+ A + F + RFK+KDL + +G V +RKA + + Q ++S+LE F + + G L G K + + E + +RE +GSL++ ATMTR D + AV
Sbjct: 298 VIFRRKRDDQGKVIKYKARWVAKGYSQVHGVNYTDTFAPTATIAAIRTMLAMAVARGMDIQQMDVNTAFLNAPVDHEIYVQPPAVDGIFSPSTVLRLKRGLYGLKQSPRLWNHTLDAWMREQDFVATATDACIYRRTCKGGKVMWVAVYVDDLLIFADSDSDMAAFKKAISKRFKMKDLGSPDICLGIKVQHDRKARTVTMSQEHYLRSVLETFGMADCKPV-----GTPLCTGYVDKPADKEEPLPDVPFRELLGSLLYAATMTRPDISAAV 565 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5553.13053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5553.13053.1 >prot_H-paniculata_contig5553.13053.1 ID=prot_H-paniculata_contig5553.13053.1|Name=mRNA_H-paniculata_contig5553.13053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp MLYKRKVSKDGKVEKYKCRFVTQGFRQIEGVHYTKKYSPPPATASIRVLLback to top mRNA from alignment at H-paniculata_contig5553:3439..4275- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5553.13053.1 ID=mRNA_H-paniculata_contig5553.13053.1|Name=mRNA_H-paniculata_contig5553.13053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig5553:3439..4275- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5553:3439..4275- >mRNA_H-paniculata_contig5553.13053.1 ID=mRNA_H-paniculata_contig5553.13053.1|Name=mRNA_H-paniculata_contig5553.13053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig5553:3439..4275- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |