mRNA_H-paniculata_contig55452.13036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55452.13036.1
Unique NamemRNA_H-paniculata_contig55452.13036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: UPI0009005A69 (uncharacterized protein LOC109136274 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009005A69)

HSP 1 Score: 61.2 bits (147), Expect = 2.800e-10
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
            L +N  W  +  PK+K  + +  +YK K   DG VE YK RLVA G +Q+ G  + +  SP    A+I++V+SLAA+
Sbjct:    8 LEDNETWELIVLPKDKQAIGSKWVYKTKLRPDGTVERYKARLVAIGYQQIAGQDFNQTFSPVAKLATIRVVISLAAV 84          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A699JZ71_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699JZ71_TANCI)

HSP 1 Score: 63.9 bits (154), Expect = 4.050e-10
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    7 ENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
            +N VW  VE P N   V +  ++K+KT  DG V IYK RL+A G  Q  G  Y+E  SP     +I+I++++AAI
Sbjct:  270 DNEVWVLVELPPNGKTVGSKWLFKKKTDMDGNVHIYKARLMAKGYTQTSGIDYEETFSPVADIRAIRILIAIAAI 344          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI)

HSP 1 Score: 63.2 bits (152), Expect = 7.730e-10
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   19 WTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
            + +VERP+N+ VV    +++ K G DG VE YK RLVA G  Q++G  Y E  +P    ASI+ VL+LAA+
Sbjct:  962 YDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAAL 1032          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR)

HSP 1 Score: 62.8 bits (151), Expect = 1.020e-9
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLA 225
            L+EN  W  VE PK++  + +  ++K K   DG+VE YKCRLVA G  Q  G  Y E  SP    +SI+ +LS A
Sbjct:   24 LLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFA 98          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A438FG10_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FG10_VITVI)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-9
Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
            L  NG W  V  P  K  V    +Y  K G DGQV+  K RLVA G  Q+ G+HY +  SP    AS++++LS+AA+
Sbjct: 1070 LHSNGTWDLVVLPSGKSTVGCRWVYAVKVGPDGQVDRLKARLVAKGYTQVYGSHYGDTFSPVAKIASVRLLLSMAAM 1146          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: Q8S7R6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8S7R6_ORYSJ)

HSP 1 Score: 62.4 bits (150), Expect = 1.130e-9
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query:   10 NGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAA 228
            N VW  ++ P     +    ++K+KT  DG ++IYK RLVA G RQ++G  Y E  SP     SI+IVL++AA
Sbjct:   11 NQVWNLLDPPDGVKAIECKWVFKKKTDVDGNIQIYKTRLVAKGFRQIQGVDYDETFSPVTMLKSIQIVLAIAA 83          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR)

HSP 1 Score: 62.0 bits (149), Expect = 1.920e-9
Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:    1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLA 225
            L+EN  W  VE PK++  +    ++K K   DG+VE YKCRLVA G  Q  G  Y E  SP    +SI+ +LS A
Sbjct:  163 LLENETWDLVELPKDRKPIGQRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFA 237          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A2I0X5Q4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X5Q4_9ASPA)

HSP 1 Score: 61.6 bits (148), Expect = 2.610e-9
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLA 225
            L + G W+ V  P NK+V+ +  I+K KT  DGQ++ YK RLVA G +Q  G ++ E  SP     +I+I+L LA
Sbjct:    8 LQQQGTWSLVPPPPNKIVLGSKWIFKLKTTPDGQIDRYKARLVAQGFKQEFGLNFNETFSPVAKLPTIRILLLLA 82          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A699PEC1_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699PEC1_TANCI)

HSP 1 Score: 60.8 bits (146), Expect = 3.270e-9
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    7 ENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAA 228
            EN VW  VE P +   V +  ++K+KT  DG V IYK RLV  G  Q  G +Y+E  SP     +I+I++++AA
Sbjct:  140 ENEVWVLVELPPSGKTVGSKWLFKKKTDMDGNVHIYKARLVEKGFTQTTGINYEETFSPVADIRAIRILIAIAA 213          
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A438JZJ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JZJ9_VITVI)

HSP 1 Score: 61.2 bits (147), Expect = 3.690e-9
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
            L  NG W  V  P  K  VS   +Y  K G DGQV+  K RLVA G  Q+ G+ Y +  SP    ASI+++LS+AA+
Sbjct:  711 LHSNGTWDLVVLPSGKSTVSCRWVYAIKVGPDGQVDRLKARLVAKGYTQVYGSDYGDTFSPVAKIASIRLLLSMAAM 787          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009005A692.800e-1040.26uncharacterized protein LOC109136274 n=1 Tax=Beta ... [more]
A0A699JZ71_TANCI4.050e-1042.67Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A060SUY4_PYCCI7.730e-1046.48Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A6G0HFF8_LARCR1.020e-944.00Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A438FG10_VITVI1.060e-942.86Retrovirus-related Pol polyprotein from transposon... [more]
Q8S7R6_ORYSJ1.130e-942.47Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A6G0J2S8_LARCR1.920e-944.00Copia protein Gag-int-pol protein Copia VLP protei... [more]
A0A2I0X5Q4_9ASPA2.610e-942.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A699PEC1_TANCI3.270e-941.89Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A438JZJ9_VITVI3.690e-944.16Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55452contigH-paniculata_contig55452:10..240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.5
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog126957.SMAR002312-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.5418062-CDS-H-paniculata_contig55452:9..2401622930582.5418062-CDS-H-paniculata_contig55452:9..240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55452 10..240 -
1691481358.3685286-CDS-H-paniculata_contig55452:9..2401691481358.3685286-CDS-H-paniculata_contig55452:9..240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55452 10..240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55452.13036.1prot_H-paniculata_contig55452.13036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55452 10..240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55452.13036.1

>prot_H-paniculata_contig55452.13036.1 ID=prot_H-paniculata_contig55452.13036.1|Name=mRNA_H-paniculata_contig55452.13036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQM
KGTHYQEASSPTPAAASIKIVLSLAAI
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mRNA from alignment at H-paniculata_contig55452:10..240-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55452.13036.1 ID=mRNA_H-paniculata_contig55452.13036.1|Name=mRNA_H-paniculata_contig55452.13036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig55452:10..240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCATCGAAAACGGGGTTTGGACGCAAGTGGAGCGCCCGAAGAACAAGCT GGTCGTGAGCACGATGATGATCTACAAAAGGAAAACTGGCCAGGACGGAC AAGTGGAGATATATAAGTGCCGCCTGGTCGCCCACGGGAACCGTCAGATG AAGGGCACCCATTACCAGGAAGCTTCGTCCCCTACACCGGCAGCGGCCAG CATAAAAATTGTGTTGTCGCTTGCGGCAATC
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Coding sequence (CDS) from alignment at H-paniculata_contig55452:10..240-

>mRNA_H-paniculata_contig55452.13036.1 ID=mRNA_H-paniculata_contig55452.13036.1|Name=mRNA_H-paniculata_contig55452.13036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig55452:10..240- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCATCGAAAACGGGGTTTGGACGCAAGTGGAGCGCCCGAAGAACAAGCT
GGTCGTGAGCACGATGATGATCTACAAAAGGAAAACTGGCCAGGACGGAC
AAGTGGAGATATATAAGTGCCGCCTGGTCGCCCACGGGAACCGTCAGATG
AAGGGCACCCATTACCAGGAAGCTTCGTCCCCTACACCGGCAGCGGCCAG
CATAAAAATTGTGTTGTCGCTTGCGGCAATCCTCATCGAAAACGGGGTTT
GGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCACGATGATG
ATCTACAAAAGGAAAACTGGCCAGGACGGACAAGTGGAGATATATAAGTG
CCGCCTGGTCGCCCACGGGAACCGTCAGATGAAGGGCACCCATTACCAGG
AAGCTTCGTCCCCTACACCGGCAGCGGCCAGCATAAAAATTGTGTTGTCG
CTTGCGGCAATC
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