mRNA_H-paniculata_contig55452.13036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: UPI0009005A69 (uncharacterized protein LOC109136274 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009005A69) HSP 1 Score: 61.2 bits (147), Expect = 2.800e-10 Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 1
Query: 1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
L +N W + PK+K + + +YK K DG VE YK RLVA G +Q+ G + + SP A+I++V+SLAA+
Sbjct: 8 LEDNETWELIVLPKDKQAIGSKWVYKTKLRPDGTVERYKARLVAIGYQQIAGQDFNQTFSPVAKLATIRVVISLAAV 84
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A699JZ71_TANCI (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699JZ71_TANCI) HSP 1 Score: 63.9 bits (154), Expect = 4.050e-10 Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query: 7 ENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
+N VW VE P N V + ++K+KT DG V IYK RL+A G Q G Y+E SP +I+I++++AAI
Sbjct: 270 DNEVWVLVELPPNGKTVGSKWLFKKKTDMDGNVHIYKARLMAKGYTQTSGIDYEETFSPVADIRAIRILIAIAAI 344
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI) HSP 1 Score: 63.2 bits (152), Expect = 7.730e-10 Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 19 WTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
+ +VERP+N+ VV +++ K G DG VE YK RLVA G Q++G Y E +P ASI+ VL+LAA+
Sbjct: 962 YDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAAL 1032
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A6G0HFF8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0HFF8_LARCR) HSP 1 Score: 62.8 bits (151), Expect = 1.020e-9 Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query: 1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLA 225
L+EN W VE PK++ + + ++K K DG+VE YKCRLVA G Q G Y E SP +SI+ +LS A
Sbjct: 24 LLENETWDLVELPKDRKPIGSRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFA 98
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A438FG10_VITVI (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FG10_VITVI) HSP 1 Score: 62.8 bits (151), Expect = 1.060e-9 Identity = 33/77 (42.86%), Postives = 44/77 (57.14%), Query Frame = 1
Query: 1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
L NG W V P K V +Y K G DGQV+ K RLVA G Q+ G+HY + SP AS++++LS+AA+
Sbjct: 1070 LHSNGTWDLVVLPSGKSTVGCRWVYAVKVGPDGQVDRLKARLVAKGYTQVYGSHYGDTFSPVAKIASVRLLLSMAAM 1146
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: Q8S7R6_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8S7R6_ORYSJ) HSP 1 Score: 62.4 bits (150), Expect = 1.130e-9 Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 10 NGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAA 228
N VW ++ P + ++K+KT DG ++IYK RLVA G RQ++G Y E SP SI+IVL++AA
Sbjct: 11 NQVWNLLDPPDGVKAIECKWVFKKKTDVDGNIQIYKTRLVAKGFRQIQGVDYDETFSPVTMLKSIQIVLAIAA 83
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A6G0J2S8_LARCR (Copia protein Gag-int-pol protein Copia VLP protein Copia protease n=1 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0J2S8_LARCR) HSP 1 Score: 62.0 bits (149), Expect = 1.920e-9 Identity = 33/75 (44.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query: 1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLA 225
L+EN W VE PK++ + ++K K DG+VE YKCRLVA G Q G Y E SP +SI+ +LS A
Sbjct: 163 LLENETWDLVELPKDRKPIGQRWVFKVKHHSDGEVERYKCRLVAKGYSQNYGVDYDETFSPVVRFSSIRTLLSFA 237
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A2I0X5Q4_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X5Q4_9ASPA) HSP 1 Score: 61.6 bits (148), Expect = 2.610e-9 Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLA 225
L + G W+ V P NK+V+ + I+K KT DGQ++ YK RLVA G +Q G ++ E SP +I+I+L LA
Sbjct: 8 LQQQGTWSLVPPPPNKIVLGSKWIFKLKTTPDGQIDRYKARLVAQGFKQEFGLNFNETFSPVAKLPTIRILLLLA 82
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A699PEC1_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699PEC1_TANCI) HSP 1 Score: 60.8 bits (146), Expect = 3.270e-9 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 7 ENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAA 228
EN VW VE P + V + ++K+KT DG V IYK RLV G Q G +Y+E SP +I+I++++AA
Sbjct: 140 ENEVWVLVELPPSGKTVGSKWLFKKKTDMDGNVHIYKARLVEKGFTQTTGINYEETFSPVADIRAIRILIAIAA 213
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Match: A0A438JZJ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JZJ9_VITVI) HSP 1 Score: 61.2 bits (147), Expect = 3.690e-9 Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1
Query: 1 LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMKGTHYQEASSPTPAAASIKIVLSLAAI 231
L NG W V P K VS +Y K G DGQV+ K RLVA G Q+ G+ Y + SP ASI+++LS+AA+
Sbjct: 711 LHSNGTWDLVVLPSGKSTVSCRWVYAIKVGPDGQVDRLKARLVAKGYTQVYGSDYGDTFSPVAKIASIRLLLSMAAM 787 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55452.13036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig55452.13036.1 >prot_H-paniculata_contig55452.13036.1 ID=prot_H-paniculata_contig55452.13036.1|Name=mRNA_H-paniculata_contig55452.13036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp LIENGVWTQVERPKNKLVVSTMMIYKRKTGQDGQVEIYKCRLVAHGNRQMback to top mRNA from alignment at H-paniculata_contig55452:10..240- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig55452.13036.1 ID=mRNA_H-paniculata_contig55452.13036.1|Name=mRNA_H-paniculata_contig55452.13036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig55452:10..240- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig55452:10..240- >mRNA_H-paniculata_contig55452.13036.1 ID=mRNA_H-paniculata_contig55452.13036.1|Name=mRNA_H-paniculata_contig55452.13036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig55452:10..240- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |