mRNA_H-paniculata_contig5543.13030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2I006_9BRAS (Integrase catalytic domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I006_9BRAS) HSP 1 Score: 64.3 bits (155), Expect = 1.540e-10 Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query: 1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
+ C EN I ++L+AA TPQQNGVAER RSV MTR ++ ++ R+WAEA + AV+ LN
Sbjct: 107 EFCRENGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILN 167
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A8J5L921_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L921_ZINOF) HSP 1 Score: 60.1 bits (144), Expect = 4.630e-10 Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
Q C + I + L+AA TPQQNGV ER R+V M RS + + +M R WAEA R AVY LN
Sbjct: 49 QFCEDEGIERHLTAAYTPQQNGVVERRNRTVMVMARSLLKSTHMPARLWAEAVRHAVYLLN 109
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2HN99_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HN99_9BRAS) HSP 1 Score: 62.0 bits (149), Expect = 1.010e-9 Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
+ C EN I ++L+AA TPQQNGVAE RSV MTR ++ ++ R+WAEA + AV+ LN
Sbjct: 556 EFCRENGIKRQLTAAYTPQQNGVAEMKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILN 616
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A2K3KQ52_TRIPR (Cysteine-rich receptor-like protein kinase 25-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KQ52_TRIPR) HSP 1 Score: 59.7 bits (143), Expect = 3.240e-9 Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
+ C EN I ++L+AA TPQQNG+AER R++ +M RS + + ++ +W EA A+Y LN
Sbjct: 28 EFCEENGIKRQLTAAYTPQQNGIAERKNRTIMDMVRSMLASKSIPKEFWPEAVNWAIYVLN 88
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR) HSP 1 Score: 60.1 bits (144), Expect = 4.830e-9 Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
+ C N I ++L+AA TPQQNGVAER R+V M RS ++ N+ ++WAEA A Y LN
Sbjct: 269 EYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLN 329
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00125D29F3 (uncharacterized protein LOC116005721 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D29F3) HSP 1 Score: 60.1 bits (144), Expect = 4.840e-9 Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 4 ICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
C ++ I+ +LSAARTPQQNGVAER R++ E TRS + + + R+WAEA A Y N
Sbjct: 737 FCGQHGILHQLSAARTPQQNGVAERRNRTLKEATRSMITFSGLPKRFWAEAINTACYTQN 796
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS) HSP 1 Score: 59.7 bits (143), Expect = 6.620e-9 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 7 CAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
C EN I ++L+AA TPQQNG+AER RS+ M R M+ ++ R+W EA + AV+ LN
Sbjct: 582 CRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLN 640
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00178C80A5 (DDE-type integrase/transposase/recombinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00178C80A5) HSP 1 Score: 59.3 bits (142), Expect = 8.080e-9 Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
+ C +N M +LSAARTPQQNGVAER R++ E R+ + + + RYWAEA A Y N
Sbjct: 263 EFCDQNGTMHQLSAARTPQQNGVAERRNRTLKEAARTMIAESGLPYRYWAEAINTACYTQN 323
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A392M335_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M335_9FABA) HSP 1 Score: 58.9 bits (141), Expect = 1.220e-8 Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 7 CAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
C EN I ++L+AA TPQQNG+AER R++ EM RS + +M +W EA ++Y LN
Sbjct: 307 CEENGIKRQLTAAYTPQQNGIAERKNRTIMEMVRSMLAGKDMPKMFWPEAVNWSIYVLN 365
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00125E78E6 (uncharacterized protein LOC115996008 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125E78E6) HSP 1 Score: 58.9 bits (141), Expect = 1.240e-8 Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 7 CAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
C EN I +LSAARTPQQNGVAER R++ E R+ + AN+ +WAEA A Y N
Sbjct: 271 CNENGIHHQLSAARTPQQNGVAERRNRTLKEAARTMLSQANISQGFWAEAINTACYTQN 329 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5543.13030.1 >prot_H-paniculata_contig5543.13030.1 ID=prot_H-paniculata_contig5543.13030.1|Name=mRNA_H-paniculata_contig5543.13030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp MQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYback to top mRNA from alignment at H-paniculata_contig5543:815..997- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5543.13030.1 ID=mRNA_H-paniculata_contig5543.13030.1|Name=mRNA_H-paniculata_contig5543.13030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig5543:815..997- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5543:815..997- >mRNA_H-paniculata_contig5543.13030.1 ID=mRNA_H-paniculata_contig5543.13030.1|Name=mRNA_H-paniculata_contig5543.13030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig5543:815..997- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |