mRNA_H-paniculata_contig5543.13030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5543.13030.1
Unique NamemRNA_H-paniculata_contig5543.13030.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2I006_9BRAS (Integrase catalytic domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I006_9BRAS)

HSP 1 Score: 64.3 bits (155), Expect = 1.540e-10
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            + C EN I ++L+AA TPQQNGVAER  RSV  MTR  ++  ++  R+WAEA + AV+ LN
Sbjct:  107 EFCRENGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILN 167          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A8J5L921_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L921_ZINOF)

HSP 1 Score: 60.1 bits (144), Expect = 4.630e-10
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            Q C +  I + L+AA TPQQNGV ER  R+V  M RS + + +M  R WAEA R AVY LN
Sbjct:   49 QFCEDEGIERHLTAAYTPQQNGVVERRNRTVMVMARSLLKSTHMPARLWAEAVRHAVYLLN 109          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2HN99_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HN99_9BRAS)

HSP 1 Score: 62.0 bits (149), Expect = 1.010e-9
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            + C EN I ++L+AA TPQQNGVAE   RSV  MTR  ++  ++  R+WAEA + AV+ LN
Sbjct:  556 EFCRENGIKRQLTAAYTPQQNGVAEMKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILN 616          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A2K3KQ52_TRIPR (Cysteine-rich receptor-like protein kinase 25-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KQ52_TRIPR)

HSP 1 Score: 59.7 bits (143), Expect = 3.240e-9
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            + C EN I ++L+AA TPQQNG+AER  R++ +M RS + + ++   +W EA   A+Y LN
Sbjct:   28 EFCEENGIKRQLTAAYTPQQNGIAERKNRTIMDMVRSMLASKSIPKEFWPEAVNWAIYVLN 88          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 60.1 bits (144), Expect = 4.830e-9
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            + C  N I ++L+AA TPQQNGVAER  R+V  M RS ++  N+  ++WAEA   A Y LN
Sbjct:  269 EYCKMNGIKRQLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLN 329          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00125D29F3 (uncharacterized protein LOC116005721 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D29F3)

HSP 1 Score: 60.1 bits (144), Expect = 4.840e-9
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    4 ICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
             C ++ I+ +LSAARTPQQNGVAER  R++ E TRS +  + +  R+WAEA   A Y  N
Sbjct:  737 FCGQHGILHQLSAARTPQQNGVAERRNRTLKEATRSMITFSGLPKRFWAEAINTACYTQN 796          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 59.7 bits (143), Expect = 6.620e-9
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    7 CAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            C EN I ++L+AA TPQQNG+AER  RS+  M R  M+  ++  R+W EA + AV+ LN
Sbjct:  582 CRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLN 640          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00178C80A5 (DDE-type integrase/transposase/recombinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00178C80A5)

HSP 1 Score: 59.3 bits (142), Expect = 8.080e-9
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 QICAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            + C +N  M +LSAARTPQQNGVAER  R++ E  R+ +  + +  RYWAEA   A Y  N
Sbjct:  263 EFCDQNGTMHQLSAARTPQQNGVAERRNRTLKEAARTMIAESGLPYRYWAEAINTACYTQN 323          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A392M335_9FABA (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M335_9FABA)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-8
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    7 CAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            C EN I ++L+AA TPQQNG+AER  R++ EM RS +   +M   +W EA   ++Y LN
Sbjct:  307 CEENGIKRQLTAAYTPQQNGIAERKNRTIMEMVRSMLAGKDMPKMFWPEAVNWSIYVLN 365          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00125E78E6 (uncharacterized protein LOC115996008 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125E78E6)

HSP 1 Score: 58.9 bits (141), Expect = 1.240e-8
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1
Query:    7 CAENDIMQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 183
            C EN I  +LSAARTPQQNGVAER  R++ E  R+ +  AN+   +WAEA   A Y  N
Sbjct:  271 CNENGIHHQLSAARTPQQNGVAERRNRTLKEAARTMLSQANISQGFWAEAINTACYTQN 329          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2I006_9BRAS1.540e-1052.46Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J5L921_ZINOF4.630e-1052.46Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HN99_9BRAS1.010e-950.82Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A2K3KQ52_TRIPR3.240e-944.26Cysteine-rich receptor-like protein kinase 25-like... [more]
A0A2K3KY79_TRIPR4.830e-949.18Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
UPI00125D29F34.840e-950.00uncharacterized protein LOC116005721 n=1 Tax=Ipomo... [more]
A0A6D2IM54_9BRAS6.620e-949.15Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
UPI00178C80A58.080e-949.18DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A392M335_9FABA1.220e-847.46Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
UPI00125E78E61.240e-852.54uncharacterized protein LOC115996008 n=1 Tax=Ipomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5543contigH-paniculata_contig5543:815..997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size183
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.6428623-CDS-H-paniculata_contig5543:814..9731622930581.6428623-CDS-H-paniculata_contig5543:814..973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5543 815..973 -
1691481357.9626749-CDS-H-paniculata_contig5543:814..9731691481357.9626749-CDS-H-paniculata_contig5543:814..973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5543 815..973 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.6581922-UTR-H-paniculata_contig5543:973..9971622930581.6581922-UTR-H-paniculata_contig5543:973..997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5543 974..997 -
1691481357.9730287-UTR-H-paniculata_contig5543:973..9971691481357.9730287-UTR-H-paniculata_contig5543:973..997Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5543 974..997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5543.13030.1prot_H-paniculata_contig5543.13030.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5543 815..973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5543.13030.1

>prot_H-paniculata_contig5543.13030.1 ID=prot_H-paniculata_contig5543.13030.1|Name=mRNA_H-paniculata_contig5543.13030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVY
CLN
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mRNA from alignment at H-paniculata_contig5543:815..997-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5543.13030.1 ID=mRNA_H-paniculata_contig5543.13030.1|Name=mRNA_H-paniculata_contig5543.13030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig5543:815..997- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATATGTGCGGAAAATGACATCATGCAAGAACTTTCTGCCGCCCGCAC CCCGCAGCAAAACGGTGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAAA TGACCCGAAGTAAGATGATCACCGCCAACATGGGTGGTAGGTATTGGGCG GAGGCGGCGCGCGCGGCTGTGTACTGCTTAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig5543:815..997-

>mRNA_H-paniculata_contig5543.13030.1 ID=mRNA_H-paniculata_contig5543.13030.1|Name=mRNA_H-paniculata_contig5543.13030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig5543:815..997- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGAACTTTCTGCCGCCCGCACCCCGCAGCAAAACGGTGTGGCGGA
GCGCAGCTGGCGTAGCGTTTTCGAAATGACCCGAAGTAAGATGATCACCG
CCAACATGGGTGGTAGGTATTGGGCGGAGGCGGCGCGCGCGGCTGTGTAC
TGCTTAAATATGCAAGAACTTTCTGCCGCCCGCACCCCGCAGCAAAACGG
TGTGGCGGAGCGCAGCTGGCGTAGCGTTTTCGAAATGACCCGAAGTAAGA
TGATCACCGCCAACATGGGTGGTAGGTATTGGGCGGAGGCGGCGCGCGCG
GCTGTGTACTGCTTAAAT
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