mRNA_H-paniculata_contig5541.13027.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 400 bits (1028), Expect = 7.850e-114 Identity = 306/906 (33.77%), Postives = 446/906 (49.23%), Query Frame = 1
Query: 1822 AIAASQDSLAAGGDDAWRPDDECNPEMLIAVVRPKNALSAAGNNGLRFSHLQCMLKTSAGREGCGPVVGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENILEHSQPAEEHAFFDAGCPANRLNLLPHQ*LQAAISSGSGGLGLTSAWSRGWSAAVGSMCAMLRQIIADSSGSLGERLRADFPGISMVR*LGATLRVSAEQRGFGARASR--VDPQRMERRCVAANTGHGRSKRSRRSREELPSAAREGRRSGP*GQDNDLGLA-------------------A*QPT---PVG*ATWP**PAQRDRA--GRRG*SEIPQHVGDWISRGPKGTAIRRYQDRISSRVRPHGAE--VRWR*ARPGRSMPMLRS-----GGRHHAPHPHLPSSRGAGLPTLAATTRSRATA*ATGHQEHGGGRRFVYGGPGLPVGYCCPGRR----ALRCSHQRLPR*GYPD*RRPHRSPVSRTPRAQERYHRRLGPRHFRGAQKRALRSKR---------TCVLQRALFQTYPPLAMESFGRLGECGEELVE*VAPSVVGEEEGDEVSQKGVLLEQMKQFISVTTQIAISRRVQRYRLALRGRQEA 4395
AIAAS+ G WRP+ E +P++L+ V+ +++ S AGN+G RFSHL+ ++ T GRE + S W+R + P+AFPPEF L+ QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVAV+GG E + + A+ Q GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E A I+ MD E R I +G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q I LV +L +G+ N K+ A+ P H E L G+ + E G VVG PIGTDA+V+ A+ V+ E G + LAR+L MPDKQ A L+ ++S ++ ++ R ++ +L AC+ DN +WVLE + E FF C +R L P+Q QA +S+G+GGLGL +A R +SA++G++ L +IA G LGE +R PG +V +G ++ ++ G + + P +E TG RR AA +G + P + LG A A PT P G R R+ G+ G + + D P + Y R + + AE R R G + + + G H L + L L + A TG + + PG PG R L +H P+AQ H R G G + +A +++ + +R+ T LA+ESFGRLGE G E ++ +A VG +G ++ KGV E++ Q +SV TQ+AISRRVQRY+LALRGRQ+A
Sbjct: 346 AIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLF-CFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVRGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVDTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVE--WALEPTGET----GRRQPTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFV--YATRRALGIEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLS---MDIVIRPGALTNASSPGYRNKGILLDVTHA--------------------DPQAQ--VHLRNGSATSDGTEIQASEARKRQHYSRPGHVSLDERSFKLT--TLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDA 1214
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 374 bits (961), Expect = 9.990e-108 Identity = 206/510 (40.39%), Postives = 299/510 (58.63%), Query Frame = 1
Query: 1822 AIAASQDSLAAGGDDAWRPDDECNPEMLIAVVRPKNALSAAGNNGLRFSHLQCMLKTSAGREGCGPVVGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENILEHSQPAEEHAFFDAGCPANRLNLLPHQ*LQAAISSGSGGLGLTSAWSRGWSAAVGSMCAMLRQIIADSSGSLGERLRADFPGISMVR*LGATLRVS 3345
A AAS+ G WRP+ E +P++L+ V+ +++ S AGN+G RFSHL+ ++ T GRE + S W+R + P+AFPPEF L+ QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVAV+GG E + + A+ Q GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E A I+ MD E R I +G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q I LV +L +G+ N K+ A+ P E L G+ + E G VVG PIGTDA+V+ A+ V+ E G + LAR+L MPDKQ A L+ ++S ++ +L R ++ +L AC DN +WVLE + E FF C +R L P+Q QA +S+G+GGLGL +A R +SA++G++ L +IA G LG +R PG +V +G ++ S
Sbjct: 367 AKAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF-CFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAIKVIAEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYLERGINHKLVRGACERLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGGSVRVRIPGTVLVERMGDAIKNS 874
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 382 bits (980), Expect = 1.480e-104 Identity = 203/516 (39.34%), Postives = 312/516 (60.47%), Query Frame = 1
Query: 1822 AIAASQDSLAAGGDDAWRPDDECNPEMLIAVVRPKNALSAAGNNGLRFSHLQCMLKTSAGREGCGPVVGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSE-RQYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENILEHSQPAEEHAFFDAGCPANRLNLLPHQ*LQAAISSGSGGLGLTSAWSRGWSAAVGSMCAMLRQIIADSSGSLGERLRADFPGISMVR*LGATLRVSAEQRGF 3363
AIA S G WRP++E +P++LI V+ +++ S AGN+G RFSHL+ + T GRE + S W+R + P+ FPPEF L+ QS+L LGEKCRP+C+G T RR AAG VRQ++P LE E Q+GVAV+GG E + + A+ Q G+W+I +C+NAFN+ KR AI+ + A L ++A+CY E A +++MD E R + +G+ QGDG+GP F I + PI+ K +++Y+ LGV Y+DD+ L + LTEE++QA+ LV +LA +G+ N AK+ A+ P H+ +++ L +G++V G VVG PIGTD +V++ A+ V+ E G E LAR+L M D+Q A LI + S ++ ++ R +D L+ +AC DN W LE + E FF GC L L P+Q Q +S+G+GGLG++SA R +SA++G++ + L ++IA +G LG+ ++ P ++V +G ++ ++ G
Sbjct: 516 AIAESITEEENGSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILI-PIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEESVQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEGVGLTVAGEG-ITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLDNMVQWALETGMGIEGTESEEEFFQQGCQDTDLKLRPYQRAQTQLSTGAGGLGVSSAVMRRFSASLGNLISTLPEVIASLTGPLGDSVKEKIPNTTLVARMGDAIKELNQEHGL 1029
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 355 bits (911), Expect = 3.400e-103 Identity = 195/491 (39.71%), Postives = 287/491 (58.45%), Query Frame = 1
Query: 1897 EMLIAVVRPKNALSAAGNNGLRFSHLQCMLKTSAGREGCGPVVGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLV-LAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENILEHSQPAEEHAFFDAGCPANRLNLLPHQ*LQAAISSGSGGLGLTSAWSRGWSAAVGSMCAMLRQIIADSSGSLGERLRADFPGISMVR*LGATLRVSAEQRG 3360
E V+ +++ S AGN+G RFSHL+ ++ T GRE + S W+R + P+AFPPEF L+ QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVAV+GG E + + A+ Q GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E A I+ MD E R I +G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD++ L +T E +Q I LV +L +G+ N K+ A+ P H E L G+ + E G VVG PIGTDA+V+ A+ V+ E G + LAR+L MPDKQ A L+ ++S ++ ++ R ++ +L AC +N +WVLE + E FF C +R L P+Q QA +S+G+GGLGL +A R +SA++G++ L +I G LGE +R PG +V +G ++ ++ G
Sbjct: 2 EARNRVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF-CFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVRGACERLENMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIVALRGPLGESVRVRIPGTVLVERMGDNIKELNQEHG 490
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE) HSP 1 Score: 332 bits (852), Expect = 1.140e-97 Identity = 184/448 (41.07%), Postives = 267/448 (59.60%), Query Frame = 1
Query: 2023 VGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENILEHSQPAEEHAFFDAGCPANRLNLLPHQ*LQAAISSGSGGLGLTSAWSRGWSAAVGSMCAMLRQIIADSSGSLGERLRADFPGISMVR*LGATLRVSAEQRG 3360
+ S W+R + P+AFPPEF L+ QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVAV+GG E + + A+ Q GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E SA +I+ MD E R I +G+ QGDG+GP FF I + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q I LV +L +G+ N K+ A+ P H E L G+ + E G VVG PIGTDA+V+ A+ V+ E G + LAR+L HMPDKQ A L+ ++S ++ + R ++ +L AC+ DN +WVLE + E FF C +R L P+Q QA +S+G+GGLGL +A R +SA++G++ L +IA G LGE +R PG +V +G ++ ++ G
Sbjct: 1 MSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAKAAKSVPNLVGYIARCYDEISAKSIYAMDSGERRTIECKSGVQQGDGMGPPLFFFI-LFPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVLTEGGADKLARMLVHMPDKQVAHLVTSQSLTQRSGNIERGINHKLVRGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHG 446
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 325 bits (834), Expect = 1.460e-91 Identity = 174/414 (42.03%), Postives = 249/414 (60.14%), Query Frame = 1
Query: 1822 AIAASQDSLAAGGDDAWRPDDECNPEMLIAVVRPKNALSAAGNNGLRFSHLQCMLKTSAGREGCGPVVGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENIL 3057
AIAAS+ G WRP+ E +P++L+ VV +++ S AGN+G RFSHL+ ++ T GRE + S W+R ++ P AFPPEF L QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVAV+GG E + + A+ Q GHW++ +C+NAFN+ KR AI+ + + L ++A+CY E A I+ MD E R I +G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q LV +L +G+ N K+ A+ P H E L G+ + E G VVG PIGTDA+V+ A+ V+ E G E LARLL MPDKQ A L+ ++S ++ ++ R ++ +L AC+ DN +WVLE +
Sbjct: 345 AIAASRTEEEEGSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF-CFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGAEKLARLLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATM 756
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 293 bits (749), Expect = 4.850e-84 Identity = 155/367 (42.23%), Postives = 219/367 (59.67%), Query Frame = 1
Query: 1822 AIAASQDSLAAGGDDAWRPDDECNPEMLIAVVRPKNALSAAGNNGLRFSHLQCMLKTSAGREGCGPVVGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPD 2916
AIAAS+ G WRP+ E +P++L+ V+ +++ S AGN+G RFSHL+ ++ GRE + W+R + P+AFPPEF L+ QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVAV+GG E + + A+ Q GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E A I+ MD R I G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q I LV +L +G+ N K+ A+ P H E L G+ + E G VVG PIGTDA+V+ A+ V+ E G + LAR+L MPD
Sbjct: 68 AIAASRTEEEEGSAPRWRPETEFDPQVLLQVINRRSSNSGAGNDGQRFSHLKSIVNNKIGREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLF-CFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPD 432
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 295 bits (755), Expect = 1.010e-81 Identity = 243/764 (31.81%), Postives = 358/764 (46.86%), Query Frame = 1
Query: 2146 TMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENILEHSQPAEEHAFFDAGCPANRLNLLPHQ*LQAAISSGSGGLGLTSAWSRGWSAAVGSMCAMLRQIIADSSGSLGERLRADFPGISMVR*LGATLRVSAEQRGFGARASR--VDPQRMERRCVAANTGHGRSKRSRRSREELPSAAREGRRSGP*GQDNDLGLAA*QPTPVG*ATWP**PAQRDRAGRRG*SEIPQHVGDWISRGPKGTAIRRYQDRISSRVRPHGAEVRWR*ARPGRSMPMLRSGGRHHAPHPHLPSSRGAGLPTLAATTRSRATA*ATGHQEHGGGRRFVYGGPGLPVGYCCPGRR----ALRCSHQRLPR*GYPD*RRPHRSPVSRTPRAQERYHRRLGPRHFRGAQKRALRSKRTCVLQRALFQTYPP-------LAMESFGRLGECGEELVE*VAPSVVGEEEGDEVSQKGVLLEQMKQFISVTTQIAISRRVQRYRLALRGRQEA 4395
T RR AAG VR+++P LE E Q+G AV GG E + + A+ Q GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E A I+ MD E R I +G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q I +V +L +G+ N K+ A+ P H E L G+ + E G VVG PIGTDA+V+ A+ V+ E G + LAR+L MPDKQ A L+ ++S ++ ++ R ++ +L AC+ DN +WVLE + E FF C +R L P+Q QA +S+G+GGLGL +A R +SA++G++ L +IA G LGE +R PG +V +G ++ ++ + + P +E A G + R + + EL AA +G + P + LG A ++ E +H+ +G I R R GA+V H L + L L + A TG + + PG PG R L +H P+AQ H R G G +A +++ R ++ LA+ESFGRLGE G E ++ +A VG +G ++ KGV E++ Q +SV TQ+AISRRVQRY+LALRGRQ+A
Sbjct: 2 TWRRLIAAGTVREWKPKLEEIFREADQFGAAVVGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF-CFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVPIPGTVLVEQMGDAIKELNQEHAISVEILKGILPPSWVE----WALEPPGETGRRQPTVAEL--AAHDGESTTPRKAQHKLGKAI------------------NKIQLEKFMESLEHLPQ------EGEIITTVHARTCRR---DGAQVNM---------------------HEPLKYALSRALNGLCVKHDVESGAPFTGERNLS---MDIVIRPGALTNASSPGYRNEGILLDVTHA--------------------DPQAQ--VHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDA 684
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE) HSP 1 Score: 293 bits (751), Expect = 1.810e-79 Identity = 275/915 (30.05%), Postives = 389/915 (42.51%), Query Frame = 1
Query: 2023 VGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAELMDLRAKAHFQLGHW--------------------------------------------LIAL-------NCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENILEHSQPAEEHAFFDAGCPANRLNLLPHQ*L--------QAAISSGSGGLGLTSAWSRGWSAAVGSMCAMLRQIIADSSGSLGERLRADFPGISMVR*LGATLRVSAEQRGFGAR--------------------ASRVDPQRMERRCVAANTGHGRSKRSRR-----------------SREELPSAAREGRRSGP*GQDNDLGLAA*QPTPV----G*ATWP**PAQRDR---------AGRR--G*SEIPQHVGDWISRGPKGTAIRRYQDRISSRVRPHGAEVRWR*ARPGRSMPMLRSGGRHHAPHPHLPSSRGAGLPTLAATTRSRATA*ATGHQEHGGGRRF---VYGGPGLPVGYCCPGRRALRCSHQRLPR*GYPD*RRPHRSPVSRTPRAQERYHRRLGPRHFRGAQKRALRSKRT--------CVLQRALFQTYPPLAMESFGRLGECGEELVE*VAPSVVGEEEGDEVSQKGVLLEQMKQFISVTTQIAISRRVQRYRLALRGRQEA 4395
+ S W+R + P+AFPPEF L+ QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVAV G E + + A+ Q GHW LIAL +C+NAFN+ KR AI+ + A L ++A+CY E A I+ MD E R I +G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q I LV +L +G+ N K+ A+ P H E L G+ + E G VVG PIGTDA+V+ A+ V+ E G + LAR++ MPDKQ A L+ ++ ++ + R ++ +L AC DN +WVLE + +E FF C +R L + QA +S+G+GGLGL +A R +SA++G++ L +IA G LGE +R PG +V +G ++ ++ R P E +AA+ G + R + S + LP A R P G +A + G A P R R A RR G E +G +G I Q R SR GA+V A R G R + PG PG R + P+AQ H R G G +A +++ ++R+L T +A+ESFGRLGE G E ++ +A VG +G ++ KGV E++ Q +SV TQ+AISRRVQRY+LALRGRQ+A
Sbjct: 1 MSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRVIAAGTVREWKPNLEERFREADQFGVAVVAGVEQVAMDAQLVHQTGHWVKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGQWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF-CFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTDAYVEDIAMKVITEGGADKLARMVVRMPDKQVAHLVTSQLLTQRSGNIERGINHKLVRGACERLDNMVMWVLEATMGLRDAEDEEEFFQDDCQPDRFKRLAGALVPADAPPAAQARLSAGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRRQPTVAE---LAAHDGESTTPRKAQHKLGKAINDIQLEKLMESLKHLPQEAVPPTRDNPYGGQEARNMAYARTRSSKGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHKGREGQIITTVQARTCSR---DGAQVNMHEPLKXXXXXXXXXXXXXXXXXXXXXXXXXXKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLD----------------VTNADPQAQ--VHLRNGSATSDGTAAQASEARKRQHYARPGHAFVERSLKLT--TIAVESFGRLGEEGYEFIDELATYAVGGRDGGTMALKGVFNERLLQIVSVATQVAISRRVQRYKLALRGRQDA 887
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 285 bits (729), Expect = 1.550e-77 Identity = 173/470 (36.81%), Postives = 246/470 (52.34%), Query Frame = 1
Query: 1822 AIAASQDSLAAGGDDAWRPDDECNPEMLIAVVRPKNALSAAGNNGLRFSHLQC-MLKTSAGREGCGPVVGSFWQRSMEQPDAFPPEF*ELFLQSNL-TLGEKCRPICVGSTMRRASAAGVVRQYRP*LEVNLSER-QYGVAVSGGAE--LMDLR---------------------------------AKAHF--------------------QLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCYGEKSADTIFQMDISEGRKISSNTGIDQGDGLGPAFFFCIPVGPILHKCREQYEGLGVELLVYLDDLVLAMGQLTEETLQAIDFLVPKLARIGVQSNNAKTKAVSPMNHVPIERENAALAAMGISVEERGGAMVVGTPIGTDAFVQQHAVTVVKEKGEEHLARLLAHMPDKQAAMLIATKSRDLKACFLARVMDAELSDQACRLTDNGGLWVLENIL 3057
AIAAS+ G WRP+ E +P++L+ V+ +++ S AGN+G FSHL ++ T GRE + S W+R + P+AFPPEF L+ QS+L LGEKCRP+C+G T RR AAG VR+++P LE E Q+GVA +G E MD + AKA + Q GHW++ +C+NAFN+ KR AI+ + A L ++A+CY E A I+ MD E R I +G+ QGDG+GP F C + PI+ K R +Y+ LGV L Y+DD+ L +T E +Q I LV +L +G+ N K+ A+ P H E L G+ + E G VVG PI TDA+V+ A+ V+ E G + LAR+L MPDKQ A L+ ++S ++ + R ++ EL C DN +WVLE +
Sbjct: 316 AIAASRTEEEEGSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQCFSHLNXSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAAAGVVEQVAMDAQLVHQTGHWVVQTDCSNXFGKRTNSEWRCYDQIPAKAIYAMDSGERPTIECKSGVQQGXQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLF-CFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIETDAYVEDIAMKVITEGGADKLARMLVRMPDKQVAHLVTSQSLTQRSGCIERGINHELVRGVCERPDNMVMWVLEATM 783 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5541.13027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5541.13027.1 >prot_H-paniculata_contig5541.13027.1 ID=prot_H-paniculata_contig5541.13027.1|Name=mRNA_H-paniculata_contig5541.13027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp MDLRAKAHFQLGHWLIALNCTNAFNSVKRAAILVEVAIRTLGLTPFVAKCback to top mRNA from alignment at H-paniculata_contig5541:1210..6427- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5541.13027.1 ID=mRNA_H-paniculata_contig5541.13027.1|Name=mRNA_H-paniculata_contig5541.13027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5218bp|location=Sequence derived from alignment at H-paniculata_contig5541:1210..6427- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5541:1210..6427- >mRNA_H-paniculata_contig5541.13027.1 ID=mRNA_H-paniculata_contig5541.13027.1|Name=mRNA_H-paniculata_contig5541.13027.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at H-paniculata_contig5541:1210..6427- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |