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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | chloroplast |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_002550.1 |
| Exons | 3 |
| Model size | 1907 |
| Cds size | 855 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1204.1299.1 >prot_H-paniculata_contig1204.1299.1 ID=prot_H-paniculata_contig1204.1299.1|Name=mRNA_H-paniculata_contig1204.1299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MDRTAQEQKPTPMDRTTNMNQQRRWQILTRVAAVLAILCCSTPAHAFVHP
FARPVGGICSTVTSGRNQPTISAASAAMAAQSARPRPAATTSMSTGDSGD
VNFSVNENDSLSRAEAVRRVGSAVLKGGGVALAGVLLSGMPRSAFALDEE
QEQFDEFRDGLEIKKKEEELAENLRLLTSAAAGLKTLNTKVEEKEYVSIR
QAMRIPPISNLRLSAKKVIAGLGDEGAKAKTQAAYAALISSVEELDRLAK
KGEQGGLKDDKGIVAAYDKCIERGDTLVSSLPMI* back to topmRNA from alignment at H-paniculata_contig1204:19347..22854+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1204.1299.1 ID=mRNA_H-paniculata_contig1204.1299.1|Name=mRNA_H-paniculata_contig1204.1299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3508bp|location=Sequence derived from alignment at H-paniculata_contig1204:19347..22854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGACTGAGTGTGCGCTGACTCCTTCGCGAAACAGGAGACAGAGCAAC
AGCAGCATTTCTGCACACCACCGGCCACAGTGTTTCCACGCCCCCACATC
CCAACGCGCATACCAACCTTTCCCAGCCGTTCAATGGATCGAACAGCGCA
GGAGCAGAAGCCAACACCAATGGACAGAACAACGAACATGAATCAGCAAC
GACGATGGCAGATCCTCACTCGAGTAGCGGCAGTCCTAGCTATCCTCTGT
TGCTCGACACCTGCGCACGCTTTCGTTCACCCCTTCGCGCGACCAGTTGG
CGGTATCTGCAGCACAGTCACTAGTGGGCGAAATCAGCCTACGATATCTG
CTGCTTCCGCGGCCATGGCGGCGCAGTCGGCGCGACCACGACCAGCAGCA
ACAACATCGATGTCCACAGGGGATTCTGGAGACGTCAACTTCTCTGTGAA
CGAAAATGATAGTCTCAGCCGGGCGGAAGCTGTCCGTCGTGTGGGGTCCG
CCGTGTTGAAGGGTGGAGGTGTTGCGCTCGCTGGGGTGTTGCTGAGCGGT
ATGCCACGGTCGGCATTTGCGCTAGATGAAGAGCAGGAGCAGTTTGACGA
GTTCCGCGACGGGCTCGAAATAAAGAAGAAGGAAGAAGAGGTTAGTCAAA
TGCTGCTATGTTCATGCAGAGGGCAACAGTTGATTGGTAGCCGATACAGA
AGGCAGAGTTGAGTCAGTCCAGTCAACAGTCACATCCAGTTGCGCGGCTG
TGCGCACATAAATTCCGTAGTATCGTCGTTAGTAGATACAGTGAGCAAAA
TATTGAGATGACTGCCACCACTGCACCTTCGACATGTACATGTCGCGGGA
GTACATTGTTGGAACTATGTTATGTGTACAGTGAGCGAGACAGCTTGTCG
ATGATATATTTACGTGTATCTCGTGCCTTGTATCTTGAGTTACAGTCAAG
AATGCCAATACCAACTTGATATGGCAGATAATCGTGGAAGAGCATGCGGG
TTTGTGCTCCCGTGCAGATTGGGTGAACATTGGATGAAACAATGCTTCAC
CTAGATAGGTCATGACGCATAGGATTGGACTGACTAATTGCTTCCAATTG
GCTCTATTTCTATTTCACCAACACCTTTGCTTGCGAGGTTTACTCCACAA
GCGTTGGTCCATACGCAGTAATGTTTCACTCTTTCCTATGCTGCCGAGTC
GACTTGCAAACGTGTCGAAATATCTTGCTGTGGAGGACCGATTCGATTGT
ATAACCCGCGTTTTGCGGGGATCGAAAATCGGGGCTTGGTACTTGACACT
CTGGGGTGGAAATATCTTGCTGTATTGTAGCAGTCTTGAGAGTTGTAGCC
TTTCCTCTGCCTTAAACACCCTAGCCCTCCCCTCCTCCCTCCTCTTTTGT
TCCATTTCCCTATTTTCCCTGTGCTGTCGTGTGCTGGGCCCCTGTCCAAC
AAAATTGCAACCATGACAGCTGGCCGAAAACTTGCGCTTGTTGACGAGCG
CTGCAGCCGGCCTCAAGACGTTGAATACTAAGGTGGAGGAGAAGGAATAC
GTGTCTATCCGACAAGCCATGCGCATTCCGCCTATCAGCAATCTGAGACT
CAGTGCAAAGAAGGTCATCGCGGGCCTCGGCGACGAAGGCGCGAAAGCGA
AGGTGCGACGTTTTTCGGACCATATCGTAGACAAAATAGGAAAATGGAAA
TGGAACATATTTCGAGCAGAATACTCATTGATTTGAGCCGGTTCTATTTG
CCCCCCCCCCCTCTCCCCCCTAAATGCATGCCATGTGTCTCCTGTAATGA
ATTTTACCCTTAAAAATAACAGTCTGCCTCGCAGCGTCACGATACGTCTG
CGTTGTACAAAGGTGTCAGCCGGTTCTGTTGACGAAACGGAACCGATTGA
GAGTGACGTGATTTTAAATGCTGCACGAAGATGTGATGCTAATGTAAAAA
TCAAACTTGCCGCTGATTTTTTTCCTTATTAGTGTCCTGTTCAATTCGCT
TTTTTTTTTTTTAACCCCCGGAAGGCTAAGGCAAAAACCTTTACCGATGC
TTCTATACTTGAATATTTCTACCGAAGTAGTTCTACCTTTCCTTTAACAG
AAAAAAGTTGTTTATTCCTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCG
AACCAAGTAGGCAGTGTGGGGATTGCACCCTCTAAAAGACCTCTGACTAG
ACTTCCAGTCATGCTCAATTCGCGAGCTACTCTACCCGTTCGGGCGTAGG
TCCGTGCCTGTTCACTTCGTTTTGGAAGTAGATATTGCATTGAAACACGA
CATGGGCGGACCTCTCAACAGTGGTGTATGCTCGAGAGTGATCGATTCTT
GTTTGTCGTCACCTGTGTACAAGCAAGCCTTGTTAACTGAATTCCAACCC
CTCTGACGTAACTTTTCCGTGCAGACGCAAGCAGCGTACGCGGCGCTCAT
TTCGTCGGTGGAGGAGTTGGACAGGCTCGCAAAGAAAGGCGAACAGGGGG
GTCTCAAAGACGATAAAGGAATTGTGGCCGCGTACGACAAGTGTATTGAA
CGCGGAGATACCCTCGTTAGTAGCCTCCCGATGATTTAGTAGTGCTCTCT
GTGGCTTTTTTTCAGTTTTTTGTTAGGGGTATGCTGAAGCAAGGAATTGT
GCCCGCAGTTTTGTGAGTATGCCATATTTTTTGTCAAGGGTTTCATATGA
TCGATCGAAACGCAATCGTTGATAAATCACATGAGTCGCGAGTTGTAGTC
CACTTTCTGCGGTAATTTTGTCTGTAGAGCGCACCTGCAGTTTGGTAGAC
GCTTATTATTGCCTCAAATTAGCATTCAAGATAGAAATAGTCGAAGGAGG
TCTCGCGTGATTGCCGCGTAGAGGGTTATTGTCGCATTAGATGGAGAAAG
AGAGAAGGGAAAGATTCCAGCATTTCTATTATTACTTATTGGTTAATTAT
GTAGGCGCGATATCACCCGGCTACGACCATGACACCGTTCACACGCGATT
TGTTATTTTTTGCAGGTATGGAATGTAGAGGAAGCGTTAGACATTGTTTC
CCTCGCTCTCTCTCCCTTAATCTTTTTCTTGAATACGAGTCACCTCGAGA
GCCATTTCTTGTTGGAGCGGACGGTGCGTATGTCCCACTGCTACATCTCT
TATCCCTCTTCTGGTTTGGATTTTGGAGAGCTCACATTTGAATAGTAGAA
ACGTAGACATTCTATACATACGCGACCTTGGTTTAAAGTATGTGGTTGCA
GTGTATATAGGCAAATAGCACCTCTAGGTTCTCTATAACTCCGAGTGTTA
GATTGGTTGGGTTTTGATACCGTATGTTCTATGGCGTGATTTATGAAGTG
AATAGTAACTGACTGGCGATGCGTAGACAGAGATGTTGTCCATTAAATGC
ACATCTGTAATGTTTTGAATAGTACCTGTAAGGATCGTTTTTAACCATCT
TTTTTCCTTGTGTTCCAGTTGCAAGGTGAAAACAGTGTGCAAATCGACTA
TTTTTTGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1204:19347..22854+ >mRNA_H-paniculata_contig1204.1299.1 ID=mRNA_H-paniculata_contig1204.1299.1|Name=mRNA_H-paniculata_contig1204.1299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig1204:19347..22854+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCGAACAGCGCAGGAGCAGAAGCCAACACCAATGGACAGAACAAC
GAACATGAATCAGCAACGACGATGGCAGATCCTCACTCGAGTAGCGGCAG
TCCTAGCTATCCTCTGTTGCTCGACACCTGCGCACGCTTTCGTTCACCCC
TTCGCGCGACCAGTTGGCGGTATCTGCAGCACAGTCACTAGTGGGCGAAA
TCAGCCTACGATATCTGCTGCTTCCGCGGCCATGGCGGCGCAGTCGGCGC
GACCACGACCAGCAGCAACAACATCGATGTCCACAGGGGATTCTGGAGAC
GTCAACTTCTCTGTGAACGAAAATGATAGTCTCAGCCGGGCGGAAGCTGT
CCGTCGTGTGGGGTCCGCCGTGTTGAAGGGTGGAGGTGTTGCGCTCGCTG
GGGTGTTGCTGAGCGGTATGCCACGGTCGGCATTTGCGCTAGATGAAGAG
CAGGAGCAGTTTGACGAGTTCCGCGACGGGCTCGAAATAAAGAAGAAGGA
AGAAGAGATGGATCGAACAGCGCAGGAGCAGAAGCCAACACCAATGGACA
GAACAACGAACATGAATCAGCAACGACGATGGCAGATCCTCACTCGAGTA
GCGGCAGTCCTAGCTATCCTCTGTTGCTCGACACCTGCGCACGCTTTCGT
TCACCCCTTCGCGCGACCAGTTGGCGGTATCTGCAGCACAGTCACTAGTG
GGCGAAATCAGCCTACGATATCTGCTGCTTCCGCGGCCATGGCGGCGCAG
TCGGCGCGACCACGACCAGCAGCAACAACATCGATGTCCACAGGGGATTC
TGGAGACGTCAACTTCTCTGTGAACGAAAATGATAGTCTCAGCCGGGCGG
AAGCTGTCCGTCGTGTGGGGTCCGCCGTGTTGAAGGGTGGAGGTGTTGCG
CTCGCTGGGGTGTTGCTGAGCGGTATGCCACGGTCGGCATTTGCGCTAGA
TGAAGAGCAGGAGCAGTTTGACGAGTTCCGCGACGGGCTCGAAATAAAGA
AGAAGGAAGAAGAGCTGGCCGAAAACTTGCGCTTGTTGACGAGCGCTGCA
GCCGGCCTCAAGACGTTGAATACTAAGGTGGAGGAGAAGGAATACGTGTC
TATCCGACAAGCCATGCGCATTCCGCCTATCAGCAATCTGAGACTCAGTG
CAAAGAAGGTCATCGCGGGCCTCGGCGACGAAGGCGCGAAAGCGAAGCTG
GCCGAAAACTTGCGCTTGTTGACGAGCGCTGCAGCCGGCCTCAAGACGTT
GAATACTAAGGTGGAGGAGAAGGAATACGTGTCTATCCGACAAGCCATGC
GCATTCCGCCTATCAGCAATCTGAGACTCAGTGCAAAGAAGGTCATCGCG
GGCCTCGGCGACGAAGGCGCGAAAGCGAAGACGCAAGCAGCGTACGCGGC
GCTCATTTCGTCGGTGGAGGAGTTGGACAGGCTCGCAAAGAAAGGCGAAC
AGGGGGGTCTCAAAGACGATAAAGGAATTGTGGCCGCGTACGACAAGTGT
ATTGAACGCGGAGATACCCTCGTTAGTAGCCTCCCGATGATTTAGACGCA
AGCAGCGTACGCGGCGCTCATTTCGTCGGTGGAGGAGTTGGACAGGCTCG
CAAAGAAAGGCGAACAGGGGGGTCTCAAAGACGATAAAGGAATTGTGGCC
GCGTACGACAAGTGTATTGAACGCGGAGATACCCTCGTTAGTAGCCTCCC
GATGATTTAG back to top
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