prot_H-paniculata_contig1204.1299.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1204.1299.1
Unique Nameprot_H-paniculata_contig1204.1299.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length285
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1204.1299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 147..167
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 31..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 42..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..284
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..30
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
IPR023222PsbQ-like domain superfamilyGENE3D1.20.120.290coord: 163..283
e-value: 2.0E-5
score: 26.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1204contigH-paniculata_contig1204:19480..21935 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1204.1299.1mRNA_H-paniculata_contig1204.1299.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1204 19347..22854 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1204.1299.1 ID=prot_H-paniculata_contig1204.1299.1|Name=mRNA_H-paniculata_contig1204.1299.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MDRTAQEQKPTPMDRTTNMNQQRRWQILTRVAAVLAILCCSTPAHAFVHP
FARPVGGICSTVTSGRNQPTISAASAAMAAQSARPRPAATTSMSTGDSGD
VNFSVNENDSLSRAEAVRRVGSAVLKGGGVALAGVLLSGMPRSAFALDEE
QEQFDEFRDGLEIKKKEEELAENLRLLTSAAAGLKTLNTKVEEKEYVSIR
QAMRIPPISNLRLSAKKVIAGLGDEGAKAKTQAAYAALISSVEELDRLAK
KGEQGGLKDDKGIVAAYDKCIERGDTLVSSLPMI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_dom_sf