mRNA_H-paniculata_contig5509.12982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5509.12982.1
Unique NamemRNA_H-paniculata_contig5509.12982.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: D8LTC1_ECTSI (Nucleolar GTP-binding protein 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTC1_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 4.560e-49
Identity = 85/92 (92.39%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:    1 TINRINMYKAKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TINR+NMYKAK IRDKKGK+VGGAYMMKNR+GDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEM+TRSTDPY+V+LRRKKLPMGLLQE
Sbjct:   30 TINRLNMYKAKGIRDKKGKLVGGAYMMKNRSGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMSTRSTDPYSVVLRRKKLPMGLLQE 121
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: A0A448ZMX9_9STRA (Nucleolar GTP-binding protein 2 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMX9_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.060e-35
Identity = 62/92 (67.39%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 TINRINMYKAKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TINR+N+YK++ IR+KKG ++GG +MM NRAGD+ ITAETGR+APDRRWFGNTRV+  ++LD FR+EMT +  DPY+V+L+RKKLPMGLL+E
Sbjct:   36 TINRLNLYKSRAIRNKKGIVIGGDFMMGNRAGDREITAETGRIAPDRRWFGNTRVVDPKQLDTFRQEMTEKVADPYSVVLKRKKLPMGLLRE 127
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: W7U800_9STRA (Nucleolar GTP-binding protein 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U800_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.370e-34
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 TINRINMYKA-KTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLL 270
            TINR+ MY+  K IR+KKGK+VGG  MMK++ G QAIT  TGRV PDRRWFGNTRVI QE+LD+FREEMTTR+ DP++++LRRKK+PMGLL
Sbjct:   37 TINRLQMYRGGKPIRNKKGKVVGGTLMMKDKVGGQAITGATGRVQPDRRWFGNTRVISQEDLDRFREEMTTRAADPFSIVLRRKKIPMGLL 127
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: A0A6T7JTR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JTR6_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.470e-34
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 TINRINMYK-AKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLL 270
            TINR+ MY   K +R+K+G +VGG +MMK+RAGD+ ITA TGR+ PDRRWFGNTRV+    LDKFREEMT + +DPY+V+L+RK+LPMGLL
Sbjct:   44 TINRLKMYNNGKAVRNKEGTLVGGQFMMKDRAGDREITAATGRIEPDRRWFGNTRVVDPTSLDKFREEMTDKVSDPYSVVLKRKQLPMGLL 134
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: K0SJ72_THAOC (NGP1NT domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJ72_THAOC)

HSP 1 Score: 123 bits (308), Expect = 4.330e-34
Identity = 59/93 (63.44%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 TINRINMYK-AKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TI R+ MY   K IR+K+GK+VGG +MM +RAGD  ITA TGR+APDRRWFGNTRV+   ELD+FREEMT+   DPY+V+++RK+LPMGLL++
Sbjct:   48 TIARLKMYNNGKAIRNKEGKVVGGQFMMGDRAGDTKITAATGRIAPDRRWFGNTRVVNPTELDRFREEMTSSMADPYSVVVKRKQLPMGLLRD 140
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: A0A1E7EVR0_9STRA (Nucleolar GTP-binding protein 2 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVR0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.830e-34
Identity = 60/92 (65.22%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 TINRINMYKAKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TI R+N+YK++ IR+KKG I+GG +MM +RAGD+ IT ETGR+APDRRWFGNTRV+  ++LD FR+EMT +  DPY+V+L+RKKLPMGLL+E
Sbjct:   41 TIKRLNLYKSRAIRNKKGTIIGGDFMMGDRAGDRDITGETGRIAPDRRWFGNTRVVDPKQLDTFRQEMTEKVADPYSVVLKRKKLPMGLLRE 132
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: A0A7S3V5H0_9STRA (Nucleolar GTP-binding protein 2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5H0_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.450e-33
Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 TINRINMYK-AKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TI R+ MY   K IR+K+G +VGG +MM +RAGD+ IT  TGR+APDRRWFGNTRV+ Q ELDKFREEMT++  DPY+V+L+RKKLPMGLLQ+
Sbjct:   47 TIKRLKMYNNGKAIRNKEGTVVGGQFMMSDRAGDREITTATGRIAPDRRWFGNTRVVGQTELDKFREEMTSKVADPYSVVLKRKKLPMGLLQD 139
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: A0A7R9UBE2_9STRA (Nucleolar GTP-binding protein 2 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBE2_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.270e-32
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 TINRINMYKA-KTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TI R+ MY++ K IR+KKG+++GG   M +RAGD  ITA+TGRV PDRRWFGNTR +  EELD FRE+MTT++ DPY+VILRRKK+PMGLL E
Sbjct:   40 TIERLKMYRSGKAIRNKKGEVIGGTLQMADRAGDVQITAQTGRVQPDRRWFGNTRTVAPEELDAFREQMTTKAADPYSVILRRKKVPMGLLAE 132
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BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: A0A5D6XVC1_9STRA (Nucleolar GTP-binding protein 2 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVC1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.500e-32
Identity = 61/93 (65.59%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 TINRINMYK-AKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TINR+NMY+ +  IR+KKGK+VGG  MM N+ G QAITA +GR+ PDRRWFGNTRV+ Q+ELDKFR EM+ ++ DPY+V+LR +KLPMGLLQ+
Sbjct:   33 TINRLNMYRNSGAIRNKKGKVVGGTLMMGNKQGGQAITATSGRIQPDRRWFGNTRVVGQKELDKFRNEMSLKAADPYSVVLRSRKLPMGLLQD 125
[Close]
BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Match: A0A7S3DPC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPC3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.610e-32
Identity = 58/93 (62.37%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 TINRINMYK-AKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVIKQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE 276
            TI R+ MY   K IR+++GK+V GA+MMK+RAGD+ I A TGR+ PDRRWFGNTRV+   ELD FR+EMT    DPY+V+L+RKK+PMGLL E
Sbjct:   38 TIQRLKMYSNGKAIRNREGKVVAGAFMMKDRAGDRKIDASTGRIQPDRRWFGNTRVVGSTELDNFRQEMTDAVADPYSVVLKRKKVPMGLLNE 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5509.12982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTC1_ECTSI4.560e-4992.39Nucleolar GTP-binding protein 2 n=2 Tax=Ectocarpus... [more]
A0A448ZMX9_9STRA1.060e-3567.39Nucleolar GTP-binding protein 2 n=1 Tax=Pseudo-nit... [more]
W7U800_9STRA1.370e-3470.33Nucleolar GTP-binding protein 2 n=2 Tax=Monodopsid... [more]
A0A6T7JTR6_9STRA1.470e-3464.84Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
K0SJ72_THAOC4.330e-3463.44NGP1NT domain-containing protein (Fragment) n=1 Ta... [more]
A0A1E7EVR0_9STRA4.830e-3465.22Nucleolar GTP-binding protein 2 n=1 Tax=Fragilario... [more]
A0A7S3V5H0_9STRA5.450e-3366.67Nucleolar GTP-binding protein 2 n=1 Tax=Chaetocero... [more]
A0A7R9UBE2_9STRA1.270e-3265.59Nucleolar GTP-binding protein 2 (Fragment) n=1 Tax... [more]
A0A5D6XVC1_9STRA1.500e-3265.59Nucleolar GTP-binding protein 2 n=1 Tax=Pythium br... [more]
A0A7S3DPC3_9STRA2.610e-3262.37Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5509contigH-paniculata_contig5509:7423..8651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue2.9e-38
Seed eggNOG ortholog2880.D8LTC1
Preferred nameGNL2
KEGG koko:K14537,ko:K16474
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000055,GO:0000166,GO:0001654,GO:0001745,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006403,GO:0006405,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007423,GO:0008104,GO:0008150,GO:0009653,GO:0009887,GO:0015031,GO:0015833,GO:0015931,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG2423@2759
Ec32 ortholog descriptionNgp1, nucleolar GTPase
Ec32 orthologEc-12_006010.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03036
Exons3
Model size276
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5509.12982.1prot_H-paniculata_contig5509.12982.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5509 7441..8651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930575.9661546-UTR-H-paniculata_contig5509:7422..74401622930575.9661546-UTR-H-paniculata_contig5509:7422..7440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5509 7423..7440 +
1691481355.4603455-UTR-H-paniculata_contig5509:7422..74401691481355.4603455-UTR-H-paniculata_contig5509:7422..7440Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5509 7423..7440 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930575.9796863-CDS-H-paniculata_contig5509:7440..75431622930575.9796863-CDS-H-paniculata_contig5509:7440..7543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5509 7441..7543 +
1691481355.4754193-CDS-H-paniculata_contig5509:7440..75431691481355.4754193-CDS-H-paniculata_contig5509:7440..7543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5509 7441..7543 +
1622930575.9983833-CDS-H-paniculata_contig5509:8088..81791622930575.9983833-CDS-H-paniculata_contig5509:8088..8179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5509 8089..8179 +
1691481355.4864142-CDS-H-paniculata_contig5509:8088..81791691481355.4864142-CDS-H-paniculata_contig5509:8088..8179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5509 8089..8179 +
1622930576.0172896-CDS-H-paniculata_contig5509:8587..86511622930576.0172896-CDS-H-paniculata_contig5509:8587..8651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5509 8588..8651 +
1691481355.4967067-CDS-H-paniculata_contig5509:8587..86511691481355.4967067-CDS-H-paniculata_contig5509:8587..8651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5509 8588..8651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5509.12982.1

>prot_H-paniculata_contig5509.12982.1 ID=prot_H-paniculata_contig5509.12982.1|Name=mRNA_H-paniculata_contig5509.12982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MYKAKTIRDKKGKIVGGAYMMKNRAGDQAITAETGRVAPDRRWFGNTRVI
KQEELDKFREEMTTRSTDPYNVILRRKKLPMGLLQE
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mRNA from alignment at H-paniculata_contig5509:7423..8651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5509.12982.1 ID=mRNA_H-paniculata_contig5509.12982.1|Name=mRNA_H-paniculata_contig5509.12982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1229bp|location=Sequence derived from alignment at H-paniculata_contig5509:7423..8651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGATCAATCGTATCAATATGTACAAAGCCAAGACCATCCGCGACAAGAA
GGGTAAGATCGTCGGAGGCGCCTACATGATGAAGAACAGGGCTGGAGATC
AGGCTATCACCGCCGAGACGGGTGAGAAGAAAAGGGCGGACGGCGTAAGG
GTCCGGGGGGGGAAGTATTTATATCGCAATCTATACGTTTCGCACATACT
AGGTTATTTAGCCTTCAAAAGGGCCAGGCTGCGTTAGATGTACTGATGAG
CAGAAGTAGATCATGACAACTAGTGGGTCTGCAGTGAAGACCCACACAAG
TACACACGCATCTACCAACCCTGACCATCTGGTCAACCTGCTTGGCGCTT
TTTCATAATACATGGTGATTGATATACATACATATATGTCATCGTTCATC
ATGCTTAGATTAAGTGTAGCCCCCACTATTAATGGCGGCTATACTGAGCC
ATGAGTAAATTACAACCAATGCCCCGAAAATAAAGAGAAAAGGAAACCGG
GCACTGCTACCCTGCAAACTGTCTTGAGCTTCAAAGCCTTGTGTAGAACA
TTCGTGAATGTCATGTTCCATGCGAGTCTTGCTCTCTCTGATCCCTCTGA
TGCTTTTTCCTGTGTTTTGGCACCCAAAACATTTTGCACGCTTGGGCCTA
CAAACGTCAACCGCAGGTCGCGTCGCGCCTGACCGCCGGTGGTTCGGCAA
CACGCGTGTCATCAAACAAGAGGAGCTCGACAAATTCAGAGAGGAGATGA
CCACAAGGTTGGTCGTTGGTTGGGCAGGAAAGAACAGAATGTCTGGGAGC
CTCCGCTGAGGATCATTTTCGTCATGGTTTTTTGCATTTTTTCGCTTTTT
TTGCCTGTCATTTGCCATAACAAATTTGTTTGTGTGCGTCTTGGTGGGTT
ATCTGCACACGACTGTCAACGCTCAACATTGCTATGAGGACGTGGTGAAT
ATAAAAAAGTTGTTTTGTTTATGTCCTGGTCAGCTCTGGATGGCCTACTT
TTCTAGTCTGCCACCATGGTTCTATTTTTGTATACCCACGCTGACGGAAT
CATGCAACGTTTCAAAACATAGCTCAATAACCTCAGCATAACATGATGGC
CAGAAACTCATAGCCCCCCCCCCCCCTCCCATCGTCTTGTTCCTCCCTAC
GTGTTGGCTTTGCAGGAGCACGGACCCATACAATGTCATCTTGCGACGTA
AGAAGCTTCCGATGGGACTATTGCAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5509:7423..8651+

>mRNA_H-paniculata_contig5509.12982.1 ID=mRNA_H-paniculata_contig5509.12982.1|Name=mRNA_H-paniculata_contig5509.12982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig5509:7423..8651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAAAGCCAAGACCATCCGCGACAAGAAGGGTAAGATCGTCGGAGG
CGCCTACATGATGAAGAACAGGGCTGGAGATCAGGCTATCACCGCCGAGA
CGGATGTACAAAGCCAAGACCATCCGCGACAAGAAGGGTAAGATCGTCGG
AGGCGCCTACATGATGAAGAACAGGGCTGGAGATCAGGCTATCACCGCCG
AGACGGGTCGCGTCGCGCCTGACCGCCGGTGGTTCGGCAACACGCGTGTC
ATCAAACAAGAGGAGCTCGACAAATTCAGAGAGGAGATGACCACAAGGTC
GCGTCGCGCCTGACCGCCGGTGGTTCGGCAACACGCGTGTCATCAAACAA
GAGGAGCTCGACAAATTCAGAGAGGAGATGACCACAAGGAGCACGGACCC
ATACAATGTCATCTTGCGACGTAAGAAGCTTCCGATGGGACTATTGCAAG
AGGAGCACGGACCCATACAATGTCATCTTGCGACGTAAGAAGCTTCCGAT
GGGACTATTGCAAGAG
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