mRNA_H-paniculata_contig55075.12979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 1.430e-21 Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1
Query: 4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLAK 174
GVT +QQF+ VMNDEL+E+MG+ QAPLARR DG PTVIL+AGLQGTGKTTAAAKLAK
Sbjct: 161 GVTAKQQFVNVMNDELVEIMGAEQAPLARRTDGKPTVILLAGLQGTGKTTAAAKLAK 217
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 6.740e-18 Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 4 GVTPQQQFIKVMNDELIEVMGSAQAPLARR-EDGNPTVILMAGLQGTGKTTAAAKLAK 174
GVTP QQF+K+M DEL++VMGS QAPLAR ++G P VIL+AGLQG GKTTAAAKLAK
Sbjct: 126 GVTPDQQFVKIMYDELVKVMGSQQAPLARSTKEGEPVVILLAGLQGAGKTTAAAKLAK 183
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI00034547B1 (signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI00034547B1) HSP 1 Score: 82.8 bits (203), Expect = 4.200e-17 Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGN-PTVILMAGLQGTGKTTAAAKLA 171
GV+P QQF+K++NDEL++VMG A APL + DG PT++LMAGLQGTGKTTAAAKLA
Sbjct: 67 GVSPDQQFVKIVNDELVKVMGEANAPLNQAADGTGPTIVLMAGLQGTGKTTAAAKLA 123
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR) HSP 1 Score: 82.0 bits (201), Expect = 7.730e-17 Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
GV P Q IK+M++EL E+MG QAPLA+R DG PTV+L+AGLQG GKTTAAAKLA
Sbjct: 68 GVDPGQMLIKIMHEELTEIMGKDQAPLAKRSDGQPTVVLLAGLQGAGKTTAAAKLA 123
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A6P2AV24_9CYAN (Signal recognition particle protein n=1 Tax=Spirulina sp. DLM2.Bin59 TaxID=2480215 RepID=A0A6P2AV24_9CYAN) HSP 1 Score: 81.3 bits (199), Expect = 1.460e-16 Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query: 1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
AGV P QQFIKV++DEL+E+MG++ APLA E PTVILMAGLQGTGKTTA AKLA
Sbjct: 66 AGVRPDQQFIKVVHDELVEIMGASNAPLAHAETA-PTVILMAGLQGTGKTTATAKLA 121
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: R7QHF1_CHOCR (Signal recognition particle SRP54 homolog ffh n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF1_CHOCR) HSP 1 Score: 80.5 bits (197), Expect = 2.670e-16 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
GV P Q +K+M++EL ++MGS QAPLA R DG PTV+L+AGLQG GKTTAAAKLA
Sbjct: 52 GVEPGQMLVKIMHEELTKIMGSNQAPLANRTDGEPTVVLLAGLQGAGKTTAAAKLA 107
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: K9SYP3_9SYNE (Signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SYP3_9SYNE) HSP 1 Score: 79.7 bits (195), Expect = 5.070e-16 Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1
Query: 1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
AGV P QQFIK++ DEL++VMGS APLA E PTVILMAGLQGTGKTTA+AKLA
Sbjct: 66 AGVRPDQQFIKIVYDELVQVMGSENAPLAEAETA-PTVILMAGLQGTGKTTASAKLA 121
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A651DTD4_9CYAN (Signal recognition particle protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A651DTD4_9CYAN) HSP 1 Score: 79.7 bits (195), Expect = 5.170e-16 Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
+GV P QQFIK++ D+L+EVMG APLA+ E+G PT++LMAGLQGTGKTTA+AKLA
Sbjct: 66 SGVRPDQQFIKLVYDQLVEVMGETNAPLAQAEEG-PTIVLMAGLQGTGKTTASAKLA 121
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI0002ACC538 (signal recognition particle protein n=1 Tax=Leptolyngbya sp. PCC 6406 TaxID=1173264 RepID=UPI0002ACC538) HSP 1 Score: 79.7 bits (195), Expect = 5.180e-16 Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 1
Query: 4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
G+ P QQFIK++NDEL+++MG + +PLA+ + G PTV+LMAGLQGTGKTTAAAKLA
Sbjct: 67 GINPGQQFIKIVNDELVKLMGESNSPLAQADSG-PTVVLMAGLQGTGKTTAAAKLA 121
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI0019F74F5C (Signal recognition particle protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F74F5C) HSP 1 Score: 79.7 bits (195), Expect = 5.190e-16 Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1
Query: 1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
AGV P QQFIK++NDEL+++MG APLA D PTV+LMAGLQGTGKTTAAAKLA
Sbjct: 66 AGVNPGQQFIKIVNDELVKLMGDTNAPLAHA-DTAPTVVLMAGLQGTGKTTAAAKLA 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig55075.12979.1 >prot_H-paniculata_contig55075.12979.1 ID=prot_H-paniculata_contig55075.12979.1|Name=mRNA_H-paniculata_contig55075.12979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTback to top mRNA from alignment at H-paniculata_contig55075:143..319+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig55075.12979.1 ID=mRNA_H-paniculata_contig55075.12979.1|Name=mRNA_H-paniculata_contig55075.12979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig55075:143..319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig55075:143..319+ >mRNA_H-paniculata_contig55075.12979.1 ID=mRNA_H-paniculata_contig55075.12979.1|Name=mRNA_H-paniculata_contig55075.12979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig55075:143..319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |