mRNA_H-paniculata_contig55075.12979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55075.12979.1
Unique NamemRNA_H-paniculata_contig55075.12979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.430e-21
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1
Query:    4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLAK 174
            GVT +QQF+ VMNDEL+E+MG+ QAPLARR DG PTVIL+AGLQGTGKTTAAAKLAK
Sbjct:  161 GVTAKQQFVNVMNDELVEIMGAEQAPLARRTDGKPTVILLAGLQGTGKTTAAAKLAK 217          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.740e-18
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    4 GVTPQQQFIKVMNDELIEVMGSAQAPLARR-EDGNPTVILMAGLQGTGKTTAAAKLAK 174
            GVTP QQF+K+M DEL++VMGS QAPLAR  ++G P VIL+AGLQG GKTTAAAKLAK
Sbjct:  126 GVTPDQQFVKIMYDELVKVMGSQQAPLARSTKEGEPVVILLAGLQGAGKTTAAAKLAK 183          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI00034547B1 (signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI00034547B1)

HSP 1 Score: 82.8 bits (203), Expect = 4.200e-17
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1
Query:    4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGN-PTVILMAGLQGTGKTTAAAKLA 171
            GV+P QQF+K++NDEL++VMG A APL +  DG  PT++LMAGLQGTGKTTAAAKLA
Sbjct:   67 GVSPDQQFVKIVNDELVKVMGEANAPLNQAADGTGPTIVLMAGLQGTGKTTAAAKLA 123          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 7.730e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
            GV P Q  IK+M++EL E+MG  QAPLA+R DG PTV+L+AGLQG GKTTAAAKLA
Sbjct:   68 GVDPGQMLIKIMHEELTEIMGKDQAPLAKRSDGQPTVVLLAGLQGAGKTTAAAKLA 123          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A6P2AV24_9CYAN (Signal recognition particle protein n=1 Tax=Spirulina sp. DLM2.Bin59 TaxID=2480215 RepID=A0A6P2AV24_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.460e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
            AGV P QQFIKV++DEL+E+MG++ APLA  E   PTVILMAGLQGTGKTTA AKLA
Sbjct:   66 AGVRPDQQFIKVVHDELVEIMGASNAPLAHAETA-PTVILMAGLQGTGKTTATAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: R7QHF1_CHOCR (Signal recognition particle SRP54 homolog ffh n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF1_CHOCR)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
            GV P Q  +K+M++EL ++MGS QAPLA R DG PTV+L+AGLQG GKTTAAAKLA
Sbjct:   52 GVEPGQMLVKIMHEELTKIMGSNQAPLANRTDGEPTVVLLAGLQGAGKTTAAAKLA 107          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: K9SYP3_9SYNE (Signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SYP3_9SYNE)

HSP 1 Score: 79.7 bits (195), Expect = 5.070e-16
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
            AGV P QQFIK++ DEL++VMGS  APLA  E   PTVILMAGLQGTGKTTA+AKLA
Sbjct:   66 AGVRPDQQFIKIVYDELVQVMGSENAPLAEAETA-PTVILMAGLQGTGKTTASAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A651DTD4_9CYAN (Signal recognition particle protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A651DTD4_9CYAN)

HSP 1 Score: 79.7 bits (195), Expect = 5.170e-16
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 1
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
            +GV P QQFIK++ D+L+EVMG   APLA+ E+G PT++LMAGLQGTGKTTA+AKLA
Sbjct:   66 SGVRPDQQFIKLVYDQLVEVMGETNAPLAQAEEG-PTIVLMAGLQGTGKTTASAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI0002ACC538 (signal recognition particle protein n=1 Tax=Leptolyngbya sp. PCC 6406 TaxID=1173264 RepID=UPI0002ACC538)

HSP 1 Score: 79.7 bits (195), Expect = 5.180e-16
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    4 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
            G+ P QQFIK++NDEL+++MG + +PLA+ + G PTV+LMAGLQGTGKTTAAAKLA
Sbjct:   67 GINPGQQFIKIVNDELVKLMGESNSPLAQADSG-PTVVLMAGLQGTGKTTAAAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI0019F74F5C (Signal recognition particle protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F74F5C)

HSP 1 Score: 79.7 bits (195), Expect = 5.190e-16
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 171
            AGV P QQFIK++NDEL+++MG   APLA   D  PTV+LMAGLQGTGKTTAAAKLA
Sbjct:   66 AGVNPGQQFIKIVNDELVKLMGDTNAPLAHA-DTAPTVVLMAGLQGTGKTTAAAKLA 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN22_ECTSI1.430e-2180.70PFfh, plastid Ffh subunit of the signal recognitio... [more]
A0A835YMH5_9STRA6.740e-1874.14SRP54-type protein n=1 Tax=Tribonema minus TaxID=3... [more]
UPI00034547B14.200e-1770.18signal recognition particle protein n=1 Tax=Synech... [more]
A0A2V3IRY4_9FLOR7.730e-1769.64Signal recognition particle protein n=1 Tax=Gracil... [more]
A0A6P2AV24_9CYAN1.460e-1673.68Signal recognition particle protein n=1 Tax=Spirul... [more]
R7QHF1_CHOCR2.670e-1667.86Signal recognition particle SRP54 homolog ffh n=1 ... [more]
K9SYP3_9SYNE5.070e-1673.68Signal recognition particle protein n=1 Tax=Synech... [more]
A0A651DTD4_9CYAN5.170e-1668.42Signal recognition particle protein n=3 Tax=Cyanob... [more]
UPI0002ACC5385.180e-1667.86signal recognition particle protein n=1 Tax=Leptol... [more]
UPI0019F74F5C5.190e-1671.93Signal recognition particle protein n=1 Tax=Leptol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55075contigH-paniculata_contig55075:143..319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue8.8e-18
Seed eggNOG ortholog2880.D8LN22
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
EC3.6.5.4
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930575.5860674-CDS-H-paniculata_contig55075:142..3191622930575.5860674-CDS-H-paniculata_contig55075:142..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55075 143..319 +
1691481355.2892401-CDS-H-paniculata_contig55075:142..3191691481355.2892401-CDS-H-paniculata_contig55075:142..319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55075 143..319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55075.12979.1prot_H-paniculata_contig55075.12979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55075 143..319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55075.12979.1

>prot_H-paniculata_contig55075.12979.1 ID=prot_H-paniculata_contig55075.12979.1|Name=mRNA_H-paniculata_contig55075.12979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKT
TAAAKLAK*
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mRNA from alignment at H-paniculata_contig55075:143..319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55075.12979.1 ID=mRNA_H-paniculata_contig55075.12979.1|Name=mRNA_H-paniculata_contig55075.12979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig55075:143..319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGCGTAACACCCCAGCAACAGTTCATCAAAGTAATGAACGACGAGTT AATCGAAGTTATGGGTTCGGCGCAGGCACCCCTAGCCAGGCGTGAAGATG GTAACCCAACCGTCATTCTGATGGCCGGTTTACAAGGAACGGGTAAAACC ACGGCTGCTGCAAAGCTGGCAAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig55075:143..319+

>mRNA_H-paniculata_contig55075.12979.1 ID=mRNA_H-paniculata_contig55075.12979.1|Name=mRNA_H-paniculata_contig55075.12979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig55075:143..319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGCGTAACACCCCAGCAACAGTTCATCAAAGTAATGAACGACGAGTT
AATCGAAGTTATGGGTTCGGCGCAGGCACCCCTAGCCAGGCGTGAAGATG
GTAACCCAACCGTCATTCTGATGGCCGGTTTACAAGGAACGGGTAAAACC
ACGGCTGCTGCAAAGCTGGCAAAGTGAGCAGGCGTAACACCCCAGCAACA
GTTCATCAAAGTAATGAACGACGAGTTAATCGAAGTTATGGGTTCGGCGC
AGGCACCCCTAGCCAGGCGTGAAGATGGTAACCCAACCGTCATTCTGATG
GCCGGTTTACAAGGAACGGGTAAAACCACGGCTGCTGCAAAGCTGGCAAA
GTGA
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