mRNA_H-paniculata_contig546.12918.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig546.12918.1
Unique NamemRNA_H-paniculata_contig546.12918.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig546.12918.1 vs. uniprot
Match: A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 2.380e-82
Identity = 139/241 (57.68%), Postives = 180/241 (74.69%), Query Frame = 3 
Query:  171 CLAVWLLRATATAFIIVVPRSGPLSQRQCASRHDTLMSSSSSASEQMDPTPEELQAQAAAIREEVKGLEATVAGSRRPK-EVVESQQAEPLPRTLLDSCWRVVMEIRGVKDAKNRVPVRLTFCTKFSSDDNILLVEQGHRFIKRGFVWEPERNPKDGRDYITFIAEVEGLSAVPDGRVYLNAYINTIEDEDGTKRYQFSEGAVTIKEVITRSFWGIFNTSGLLAEFKIVGTWDAFPIKDLP 890
            CL +WL   T T   + VP   P++ R+   R  T + S      ++ P+PE L+A+AAAIREE+K LEA  A +RRP  E+ E ++  P P TLLDSCW++VM++RGVK  KNRVPVRL FC KF+ +D IL VE  +RF+KRG+VWEP+RN  + +++ITFIAEVEGLSAVPDGR+++N +I+ IE +DG  RY+FSEGAVTIKEVI +SFWG+FNT+GLLAEFK+VGTWDA PI  LP
Sbjct:    8 CLVLWL---TPTHSFMAVP---PIAARK---RVTTQLHSGEDG--RIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALP 237
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BLAST of mRNA_H-paniculata_contig546.12918.1 vs. uniprot
Match: A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.390e-26
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 3 
Query:  540 KFSSDDNILLVEQGHRFIKRGFVWEPERNPKDGRDYITFIAEVEGLSAVPDGRVYLNAYINTIEDEDGTKRYQFSEGAVTIKEVITRSFWGIFNTSGLLAEFKIVGTWDAFPIKDLP 890
            +FSSDDNILLV  G   I RG++W P+R+    R YI F   V+GLSAVPDG++YLNA    ++ +D T  Y+ S+G +TIKEV  R  +G+F+ +G+LAEFK+VG + A P++++P
Sbjct:   71 RFSSDDNILLVSAGTPAITRGYIWAPDRDAN--RTYIAFDIGVKGLSAVPDGKLYLNA---RVDQDDATGGYKLSDGVLTIKEVDNRRGFGLFSFAGILAEFKVVGEFVATPLREMP 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig546.12918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX4_9PHAE2.380e-8257.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMB8_9STRA2.390e-2649.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig546contigH-paniculata_contig546:20921..23981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001100.1
Exons4
Model size1673
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig546.12918.1prot_H-paniculata_contig546.12918.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig546 21070..23234 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930565.7288399-UTR-H-paniculata_contig546:20920..210691622930565.7288399-UTR-H-paniculata_contig546:20920..21069Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig546 20921..21069 +
1691481350.8238158-UTR-H-paniculata_contig546:20920..210691691481350.8238158-UTR-H-paniculata_contig546:20920..21069Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig546 20921..21069 +
1622930565.8266299-UTR-H-paniculata_contig546:23234..239811622930565.8266299-UTR-H-paniculata_contig546:23234..23981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig546 23235..23981 +
1691481350.8818057-UTR-H-paniculata_contig546:23234..239811691481350.8818057-UTR-H-paniculata_contig546:23234..23981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig546 23235..23981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930565.7506928-CDS-H-paniculata_contig546:21069..213481622930565.7506928-CDS-H-paniculata_contig546:21069..21348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 21070..21348 +
1691481350.8342378-CDS-H-paniculata_contig546:21069..213481691481350.8342378-CDS-H-paniculata_contig546:21069..21348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 21070..21348 +
1622930565.7755136-CDS-H-paniculata_contig546:21775..219451622930565.7755136-CDS-H-paniculata_contig546:21775..21945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 21776..21945 +
1691481350.8438222-CDS-H-paniculata_contig546:21775..219451691481350.8438222-CDS-H-paniculata_contig546:21775..21945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 21776..21945 +
1622930565.7898724-CDS-H-paniculata_contig546:22495..226291622930565.7898724-CDS-H-paniculata_contig546:22495..22629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 22496..22629 +
1691481350.8600025-CDS-H-paniculata_contig546:22495..226291691481350.8600025-CDS-H-paniculata_contig546:22495..22629Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 22496..22629 +
1622930565.8104494-CDS-H-paniculata_contig546:23040..232341622930565.8104494-CDS-H-paniculata_contig546:23040..23234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 23041..23234 +
1691481350.872132-CDS-H-paniculata_contig546:23040..232341691481350.872132-CDS-H-paniculata_contig546:23040..23234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig546 23041..23234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig546.12918.1

>prot_H-paniculata_contig546.12918.1 ID=prot_H-paniculata_contig546.12918.1|Name=mRNA_H-paniculata_contig546.12918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
MLYSIVWCLAVWLLRATATAFIIVVPRSGPLSQRQCASRHDTLMSSSSSA
SEQMDPTPEELQAQAAAIREEVKGLEATVAGSRRPKEVVESQQAEPLPRT
LLDSCWRVVMEIRGVKDAKNRVPVRLTFCTKFSSDDNILLVEQGHRFIKR
GFVWEPERNPKDGRDYITFIAEVEGLSAVPDGRVYLNAYINTIEDEDGTK
RYQFSEGAVTIKEVITRSFWGIFNTSGLLAEFKIVGTWDAFPIKDLPLAD
VASESPPA*
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mRNA from alignment at H-paniculata_contig546:20921..23981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig546.12918.1 ID=mRNA_H-paniculata_contig546.12918.1|Name=mRNA_H-paniculata_contig546.12918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3061bp|location=Sequence derived from alignment at H-paniculata_contig546:20921..23981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCGCTTTCGTCTATTCTGCCTCAGTGTTAGAGCTGAACGTTTTGCCAT
AATCCAGGCTCAACAATTCAATTTGAACTTCTGGCACTGCAGGGCGACCA
GTTCAAATGTTCAGATTTGTGTGCCCCTGCGATTTAGTCAACACTCAACA
TGTTGTATTCCATCGTCTGGTGCCTGGCAGTGTGGCTACTGCGAGCAACC
GCCACTGCGTTTATAATTGTGGTACCACGATCTGGACCCCTCTCGCAGCG
TCAATGTGCATCACGACATGATACGCTGATGTCAAGTTCTTCGTCTGCAA
GTGAACAAATGGATCCCACCCCAGAGGAGTTACAAGCGCAAGCTGCGGCG
ATACGGGAGGAAGTGAAGGGGTTAGAGGCCACTGTGGCAGGAAGCAGGCG
ACCCAAGGAGGTGGTCGAATCGCAGCAGGTGAGGGCATACGGATACTTGC
CCGTGATAACATGAGCGGGTACAGCTATGGGCGACTGCAGCACATGTTCA
TCAAGCACTGCACATGATACAGTACAGCACCCTACAGAGCATGGCGGAAA
GTGGTCAAGTAAGTCATGGAGAAAGCTTCAAGCTCTTGTCATTAGCTTCG
CGCCTTAGCGAAGAGTGGAGCTAAGCCTGCAGTAAGACCGCTCTTTCGAG
AATCTACAAACTAGTCATGGTGCGCATAGGGAGAAGCTGCCACTTGCGCA
AATCGATGTTTTGTGTACATAGATGCAGAGTTGCCGACTCCGTGCTGTAG
CTGATCGCTAAATAGGGTAACCAACTTACAGAGCATGGACCAATCGGTGT
CAAGATAGCGCGCCGCTCGTATCTACCATCTCTTATGTGCACGCCAACAT
GACAGGCTGAGCCACTTCCTCGGACCTTGCTGGACAGCTGTTGGAGAGTG
GTTATGGAGATTCGAGGTGTAAAAGATGCCAAGAACCGAGTGCCCGTGAG
GCTGACCTTTTGCACTAAGTTCTCGTCCGATGACAACATATTGCTGGTGG
AGCAGGGGCACCGCTTTATCAAACGGTACGTTGAAGCGGTTATTAAGCTG
ATGCCTTCCCTGATCTGGTCTCACAGCGAGCCAAACTTGACCGGGTGGTA
TGACGCAAGATATATTGAAACCAACTGTGGGGCCTTAGAGCACAAGGCAA
CGCATGAAGTTGTGGTAGGAAGCTAAGCCGGGCGGGTGAAATGAGCAGGA
ACACAAATAGGGCTCCAAACCACATGCGGACGACTCATGAACCACCGCTA
CCATGCAGGAAGAAGGAAGAAGTGCCTGCAGTTTTCCTTTTGATCAATTT
TGGTGAAAAAAGCCACCTGACTGGTTGATACAGTCGTTAAAAAGAAACCG
GCATTAGGGAGGGGGGAAGCTTGCAAAATATTGTGTTAGGAGCGCTTCTC
AGGTGGGTTGTTGGTCGGCGAAGGGACTTCATACCAAGCACGTTGGTGAC
CCGCTTGCTTTGTAATCTATGTTTCTGGCTTTTTGGCATACCATGCTCTA
TCTTCCCGCCTGTTCGTGTTTGACTGAAACCTTCACGGTCGTTCGGGTGT
CTGATGTCGACTGTATGCCACCTAGGGGATTCGTGTGGGAGCCTGAACGT
AATCCTAAAGATGGACGAGATTACATCACCTTCATTGCCGAGGTAGAGGG
ACTGTCCGCAGTTCCAGACGGAAGGGTATACTTGAACGCGTACATCAACA
CTATTGAAGGTGGGTTGACAAAGTCCTGTCTCACCGCACCATACGCTGTA
ATCTTTAGTCAAGCGAAAAACCCAAACCTTACAATGCTGTAGTGCAGTAG
GTACGAGCTTCCATTTTGATTGGGTGGGGAATACAGCCAAAACTTGATCT
ATTCCACCTCATGGACCACTTGCAGAGTTTTTCAACCATCTTCAGTTGTG
AAGCAACATTCCCATCGTGTGTGATTCCAATGTTTGTAGTGCATTACCAT
TCTATGTATAATGTGTTGCGTGTCCCTCGTCCCATGTTCGCGGCACGCCC
AGACGTTCCGTCAAGGCGGCATTATTCAGCTCTTCCCCATAGTCGATGCA
ACAACCGAGACTTTGTGGTTCAGACCCTTATGCCTTCCTTTTGCTTGTGC
TCGTGATCCCGTTATATTAGATGAGGACGGGACGAAACGGTATCAATTCA
GCGAGGGAGCCGTTACCATCAAGGAAGTAATCACGAGATCGTTTTGGGGA
ATTTTCAACACGTCCGGGTTGTTGGCGGAGTTCAAGATCGTGGGAACATG
GGACGCCTTTCCGATAAAGGACTTGCCCTTAGCGGACGTTGCCTCTGAAT
CGCCTCCTGCGTGAGTTACTTGCCCCTGGAATTTTCCGTGAGATCCAGGG
ATACTAGCGGTCTGCGGTTCCACCCTCTGCTTTATGGAACATGAGGAAGT
TTTGGACTCCGAGGTATACCGTGCGAAAACGCACAGGGGTTGGTGGCGGA
TTCCTTCTCTGATGGGATGTACGGTTATCCCAACGCTTCAGCAAGTACCG
TGTGTAGAGACGGTATAATCAGTTGGTAAGGTCAATTGTGGGCTTCGATG
GTAGATCCGTTGAACATGATATTTTGAGCTACAAAAATGCGTGGATATAG
AATGGGTGGTGTCGATGAAGTATGCGAGATCTGTGTATTTATTCTTCCAA
TTGTACCAAGATTTCTATTTTTTCATGCAAGCACGAACGTTTTCGGGCAC
AAGGACGATCGAGCATGCTGTGTTTCGTCAAGAATCCTGTTGGGCATTAG
TTGTACACGGGTCGTGTTGCGCTACATAGAGCAATTGCTCACATTGAACT
GTGGCATTGGGGTAGAGCCCCACGGTTTCGACTCGTTGTCAAGAGTGGAT
CTAGAGCTTCTGCAGCTTAGCATATTGAATATGGCACCGTACATTGTTAA
GTGCAGGTGAGATCACCTCTGCAACTGTATTGAACACACTTAGCCATGAG
ACCCGAGGATTATGAAATACAGCACATGCCATTCCTGCTTCAACCGTGGC
TCTGGGATAATGCGCTACCTCGAGGAGGAAGTGGCATGAAACAAGATTCC
AATACTACGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig546:20921..23981+

>mRNA_H-paniculata_contig546.12918.1 ID=mRNA_H-paniculata_contig546.12918.1|Name=mRNA_H-paniculata_contig546.12918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig546:20921..23981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTATTCCATCGTCTGGTGCCTGGCAGTGTGGCTACTGCGAGCAAC
CGCCACTGCGTTTATAATTGTGGTACCACGATCTGGACCCCTCTCGCAGC
GTCAATGTGCATCACGACATGATACGCTGATGTCAAGTTCTTCGTCTGCA
AGTGAACAAATGGATCCCACCCCAGAGGAGTTACAAGCGCAAGCTGCGGC
GATACGGGAGGAAGTGAAGGGGTTAGAGGCCACTGTGGCAGGAAGCAGGC
GACCCAAGGAGGTGGTCGAATCGCAGCAGATGTTGTATTCCATCGTCTGG
TGCCTGGCAGTGTGGCTACTGCGAGCAACCGCCACTGCGTTTATAATTGT
GGTACCACGATCTGGACCCCTCTCGCAGCGTCAATGTGCATCACGACATG
ATACGCTGATGTCAAGTTCTTCGTCTGCAAGTGAACAAATGGATCCCACC
CCAGAGGAGTTACAAGCGCAAGCTGCGGCGATACGGGAGGAAGTGAAGGG
GTTAGAGGCCACTGTGGCAGGAAGCAGGCGACCCAAGGAGGTGGTCGAAT
CGCAGCAGGCTGAGCCACTTCCTCGGACCTTGCTGGACAGCTGTTGGAGA
GTGGTTATGGAGATTCGAGGTGTAAAAGATGCCAAGAACCGAGTGCCCGT
GAGGCTGACCTTTTGCACTAAGTTCTCGTCCGATGACAACATATTGCTGG
TGGAGCAGGGGCACCGCTTTATCAAACGGCTGAGCCACTTCCTCGGACCT
TGCTGGACAGCTGTTGGAGAGTGGTTATGGAGATTCGAGGTGTAAAAGAT
GCCAAGAACCGAGTGCCCGTGAGGCTGACCTTTTGCACTAAGTTCTCGTC
CGATGACAACATATTGCTGGTGGAGCAGGGGCACCGCTTTATCAAACGGG
GATTCGTGTGGGAGCCTGAACGTAATCCTAAAGATGGACGAGATTACATC
ACCTTCATTGCCGAGGTAGAGGGACTGTCCGCAGTTCCAGACGGAAGGGT
ATACTTGAACGCGTACATCAACACTATTGAAGGGGATTCGTGTGGGAGCC
TGAACGTAATCCTAAAGATGGACGAGATTACATCACCTTCATTGCCGAGG
TAGAGGGACTGTCCGCAGTTCCAGACGGAAGGGTATACTTGAACGCGTAC
ATCAACACTATTGAAGATGAGGACGGGACGAAACGGTATCAATTCAGCGA
GGGAGCCGTTACCATCAAGGAAGTAATCACGAGATCGTTTTGGGGAATTT
TCAACACGTCCGGGTTGTTGGCGGAGTTCAAGATCGTGGGAACATGGGAC
GCCTTTCCGATAAAGGACTTGCCCTTAGCGGACGTTGCCTCTGAATCGCC
TCCTGCGTGAATGAGGACGGGACGAAACGGTATCAATTCAGCGAGGGAGC
CGTTACCATCAAGGAAGTAATCACGAGATCGTTTTGGGGAATTTTCAACA
CGTCCGGGTTGTTGGCGGAGTTCAAGATCGTGGGAACATGGGACGCCTTT
CCGATAAAGGACTTGCCCTTAGCGGACGTTGCCTCTGAATCGCCTCCTGC
GTGA
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