prot_H-paniculata_contig546.12918.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig546.12918.1
Unique Nameprot_H-paniculata_contig546.12918.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length259
Homology
[Close]
BLAST of mRNA_H-paniculata_contig546.12918.1 vs. uniprot
Match: A0A6H5KAX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KAX4_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 9.400e-87
Identity = 139/241 (57.68%), Postives = 180/241 (74.69%), Query Frame = 0 
Query:    8 CLAVWLLRATATAFIIVVPRSGPLSQRQCASRHDTLMSSSSSASEQMDPTPEELQAQAAAIREEVKGLEATVAGSRRPK-EVVESQQAEPLPRTLLDSCWRVVMEIRGVKDAKNRVPVRLTFCTKFSSDDNILLVEQGHRFIKRGFVWEPERNPKDGRDYITFIAEVEGLSAVPDGRVYLNAYINTIEDEDGTKRYQFSEGAVTIKEVITRSFWGIFNTSGLLAEFKIVGTWDAFPIKDLP 247
            CL +WL   T T   + VP   P++ R+   R  T + S      ++ P+PE L+A+AAAIREE+K LEA  A +RRP  E+ E ++  P P TLLDSCW++VM++RGVK  KNRVPVRL FC KF+ +D IL VE  +RF+KRG+VWEP+RN  + +++ITFIAEVEGLSAVPDGR+++N +I+ IE +DG  RY+FSEGAVTIKEVI +SFWG+FNT+GLLAEFK+VGTWDA PI  LP
Sbjct:    8 CLVLWL---TPTHSFMAVP---PIAARK---RVTTQLHSGEDG--RIPPSPETLRARAAAIREELKELEANAAATRRPNAELAEPKRVVPFPETLLDSCWKIVMDLRGVKSDKNRVPVRLVFCCKFAEEDFILEVESDNRFVKRGYVWEPDRNDDEDKEFITFIAEVEGLSAVPDGRIFMNGFIDKIEGDDGKTRYKFSEGAVTIKEVIDKSFWGVFNTAGLLAEFKVVGTWDASPIDALP 237
[Close]
BLAST of mRNA_H-paniculata_contig546.12918.1 vs. uniprot
Match: A0A836CMB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.610e-28
Identity = 58/117 (49.57%), Postives = 83/117 (70.94%), Query Frame = 0 
Query:  131 KFSSDDNILLVEQGHRFIKRGFVWEPERNPKDGRDYITFIAEVEGLSAVPDGRVYLNAYINTIEDEDGTKRYQFSEGAVTIKEVITRSFWGIFNTSGLLAEFKIVGTWDAFPIKDLP 247
            +FSSDDNILLV  G   I RG++W P+R+    R YI F   V+GLSAVPDG++YLNA    ++ +D T  Y+ S+G +TIKEV  R  +G+F+ +G+LAEFK+VG + A P++++P
Sbjct:   71 RFSSDDNILLVSAGTPAITRGYIWAPDRDAN--RTYIAFDIGVKGLSAVPDGKLYLNA---RVDQDDATGGYKLSDGVLTIKEVDNRRGFGLFSFAGILAEFKVVGEFVATPLREMP 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig546.12918.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX4_9PHAE9.400e-8757.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMB8_9STRA1.610e-2849.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..20
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..20
score: 0.587
NoneNo IPR availableTMHMMTMhelixcoord: 2..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig546contigH-paniculata_contig546:21070..23234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig546.12918.1mRNA_H-paniculata_contig546.12918.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig546 20921..23981 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig546.12918.1 ID=prot_H-paniculata_contig546.12918.1|Name=mRNA_H-paniculata_contig546.12918.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp
MLYSIVWCLAVWLLRATATAFIIVVPRSGPLSQRQCASRHDTLMSSSSSA
SEQMDPTPEELQAQAAAIREEVKGLEATVAGSRRPKEVVESQQAEPLPRT
LLDSCWRVVMEIRGVKDAKNRVPVRLTFCTKFSSDDNILLVEQGHRFIKR
GFVWEPERNPKDGRDYITFIAEVEGLSAVPDGRVYLNAYINTIEDEDGTK
RYQFSEGAVTIKEVITRSFWGIFNTSGLLAEFKIVGTWDAFPIKDLPLAD
VASESPPA*
back to top