prot_H-paniculata_contig54310.12882.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig54310.12882.1
Unique Nameprot_H-paniculata_contig54310.12882.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length241
Homology
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A1M2VV58_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VV58_TRAPU)

HSP 1 Score: 182 bits (462), Expect = 5.990e-49
Identity = 97/234 (41.45%), Postives = 145/234 (61.97%), Query Frame = 0
Query:    1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGR-REKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKI 233
            +FK K   DGS+ +YKARLVA+GF+QVE  D  +T APV+  +++RTV +LA+ YD ++  MD+ +A+LN   +E +++  PP F     D   V RLR SLYGLKQ+ R W   +      +G +RS  D  ++   ++G    L++A+Y DD++IAG  R  +D  K  +S+   M D GS   +LG+E+ RDR   T++ISQA YI ++L+R+G   CR V TP E  +K+
Sbjct: 1038 VFKIKRGPDGSIEKYKARLVAKGFTQVEGIDYTDTFAPVSKFASIRTVLALAAMYDLDVDQMDVKSAFLNGDLDEEIYMTCPPGFD---HDAGSVWRLRKSLYGLKQASREWYKKIRSEFEDLGFERSDADHSIFVKVENG--VILIIALYVDDMLIAGNDRTTIDAFKSTLSERFEMTDLGSARWILGMEIERDRARHTLSISQAQYIEKILERHGMANCRPVSTPMEPNLKL 1266          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.150e-47
Identity = 92/223 (41.26%), Postives = 133/223 (59.64%), Query Frame = 0
Query:    9 DGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRD-VPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGR-REKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEG 229
            +G + R KAR +A+G+SQ    D   T APVA ++T+R + ++A   D EL  MD+D AYL +  EE ++VK PP +     +    V RLR SLYGLKQSGRNW+  ++ +  G G   S+ D CLY      GE  L++ +Y DDL+IAG  R+ VD+ K  IS+   MKD   L  +LG+ ++R+R    + ISQ +YI  +L ++   +C+ V TP EG
Sbjct:   31 NGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG 252          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 166 bits (421), Expect = 6.050e-47
Identity = 88/236 (37.29%), Postives = 145/236 (61.44%), Query Frame = 0
Query:    1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVP-FVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREKV-DELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKIS 234
            +F+ K  + G + R+KARLVA+GFSQ    D  ET APVA  +++R V SLA++Y  +L  MD+  A+LN   +E +++  P  +     D P  V +L+ SLYGLKQS R WN T++DF++ +G  +  +D C+Y  RD  G+  + VA+Y DDLV+A   +++ +  KH +S+   M D G L   LG+E++ DR +G + + Q  +++ +L ++G  + + V TP +  +K++
Sbjct:   34 VFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLT 265          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A8D8HJI9_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8HJI9_CULPI)

HSP 1 Score: 171 bits (433), Expect = 1.090e-46
Identity = 97/234 (41.45%), Postives = 137/234 (58.55%), Query Frame = 0
Query:    1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREK-VDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKI 233
            +FK K   DG+V RYKARLVARGF+Q    D  ET +PVA M+TLR + +LA+   + L  MD+  A+LN   +E +++  PP F    R    V +L  S+YGLKQS RNWN   +D++  +G  RS  D CLY  + DG  T +L+  Y DD++IAG   K +  LK  +S    MKD       LG+ + RDR  G++ I Q +Y   VLKR+G + C+  P P + ++K+
Sbjct:   52 VFKVKKNGDGTVERYKARLVARGFTQRAGFDFSETYSPVAKMATLRILLALANHEGWHLHQMDVKCAFLNGSLDEDIYMCQPPGFE---RGKDLVCKLNRSIYGLKQSSRNWNRRFDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLI--YVDDILIAGNDLKAIRALKGKLSTEFEMKDMEEAKIFLGLRIDRDRKAGSMTIDQKAYTLGVLKRFGMENCKSSPVPMQPRLKL 280          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A8D9B1F5_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9B1F5_9HEMI)

HSP 1 Score: 171 bits (434), Expect = 1.110e-46
Identity = 92/234 (39.32%), Postives = 141/234 (60.26%), Query Frame = 0
Query:    1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIA-GRREKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKI 233
            +F++K   +G++ ++KARLVA+GF Q    D  E  APVA +ST+RTV ++A+  D  L  MD+  A+LN   EE +++  P  ++  +  +  V +L  SLYGLKQS R WN   NDF+V  G +RS  D CLYS  ++G      V +Y DDL++      K+  +K+ + +  +M DFG L   LGIE+ RD   GT+++SQ  YI ++L R+   +C+GV TP E  +++
Sbjct:   70 VFQKKFNSEGNIEKFKARLVAKGFQQRRGIDYDEIFAPVAKLSTIRTVLAIANHKDLFLHQMDVKTAFLNGVLEEEIYMYQPEGYNSVNSGM--VCKLNKSLYGLKQSPRCWNKRFNDFMVTSGFERSKNDYCLYSRFEEG--LTFYVILYVDDLILCCNDLNKIQNMKNRLCKEFKMTDFGKLKFFLGIEIERDEEKGTLSMSQKQYILKLLDRFQMTDCKGVNTPMEKGLQL 299          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A146HMH3_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HMH3_MYCCL)

HSP 1 Score: 175 bits (443), Expect = 2.100e-46
Identity = 98/241 (40.66%), Postives = 145/241 (60.17%), Query Frame = 0
Query:    1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAP--AEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRR-EKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKISAPES 238
            +FK K    G+V RYKARLVA+GFSQV   D ++  APVA ++++R V + A+E D+E+  +D+  AYLN    A+E ++++ PP F P       V  L  +LYGLKQSGR W   L +    +G +R   D  ++  R+DG     +V V+ DD  +A +R E+V  LK ++  Y  + D G +  +LGIEV+RDR   TI++SQ +YI  +L+RYG DE + V TP E    +S+ +S
Sbjct: 1014 VFKAKKDSAGNVVRYKARLVAQGFSQVPGVDYYDVYAPVAKLASIRAVLAKAAELDWEIHQVDIKGAYLNGELQADEQIYMRQPPGF-PEPNSAGKVCHLLKTLYGLKQSGRRWYQRLVEIFTAMGFERCECDHGVFFQREDGAVV-CVVVVHVDDCTVAAKRLERVQSLKKDMGTYVDVSDLGEIHWILGIEVKRDRAARTIHLSQRAYIDSILRRYGLDELKPVSTPMETSANLSSSQS 1252          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.190e-46
Identity = 94/223 (42.15%), Postives = 132/223 (59.19%), Query Frame = 0
Query:    9 DGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPF-SRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGR-REKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEG 229
            +G + R KAR +A+G+SQ    D   T APVA ++T+R V +LA   D EL  MD++ AYL +  EE ++VK PP +  + S     V RLR SLYGLKQSGRNW+  ++ +  G G   S+ D CLY      GE  L++ +Y DDL+I    RE V + KH IS+   MKD   L  +LG+ ++RDR    + ISQ +YI  +L ++   +C+ V TP EG
Sbjct:   31 NGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEG 252          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.740e-46
Identity = 95/222 (42.79%), Postives = 132/222 (59.46%), Query Frame = 0
Query:   10 GSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDV-PFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGR-REKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEG 229
            G + R KAR +A+G+SQ    D   T APVA M+T+R V +LA   D EL  MD+D AYL +  EE +++K PP +  +  +    V RLR SLYGLKQSGRNW+  ++ +  G GL  S  D CLY      GE  L++ +Y DDL+I    R   D+ K +IS+   MKD   L  +LG+ ++R+R N T+ ISQ  YI  +L ++G  +C+ V TP EG
Sbjct:  252 GVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEG 472          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM)

HSP 1 Score: 164 bits (416), Expect = 4.270e-46
Identity = 87/236 (36.86%), Postives = 144/236 (61.02%), Query Frame = 0
Query:    1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVP-FVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREKV-DELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKIS 234
            +F+ K  + G + R+KARLVA+GFSQ    D  ET APVA  +++R V SLA++Y  +L  MD+  A+LN   +E +++  P  +     D P  V +L+ SLYGLKQS R WN T++DF++ +G  +  +D C+Y  RD  G+  + VA+Y DDLV+A   +++ +  KH +S+   M D G L   LG+E++ D  +G + + Q  +++ +L ++G  + + V TP +  +K++
Sbjct:   73 VFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLT 304          
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: UPI001C91A683 (hypothetical protein n=1 Tax=Modestobacter lapidis TaxID=1608613 RepID=UPI001C91A683)

HSP 1 Score: 165 bits (418), Expect = 7.100e-46
Identity = 88/239 (36.82%), Postives = 144/239 (60.25%), Query Frame = 0
Query:    1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREK-VDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKISAPES 238
            +FK+K   +G + +YKARLVA+G++Q+E  D  E  +PVA ++++RTV S A+ YD E++ MD+  A+L+   EE +++K P  F    ++   V +L  SLYGLKQS R W    + +   IG  RS  D C+Y  R+  GE  +++ +Y DD+++ G   K +  +K  +++   MKD G+ + +LG+ +RRDR    + + Q  YI  +LK++   +C+ V TP    VK+SA +S
Sbjct:   10 VFKKKQDAEGKIGKYKARLVAKGYAQIEGVDYAEIFSPVAKLTSIRTVLSAAAAYDLEIEQMDVKTAFLHGDLEEEIYMKQPEGFVARGKEN-LVCKLEKSLYGLKQSPRMWYQKFDSYAQQIGFTRSHADHCVYVKRE--GEMFVILTLYVDDMLLIGNSTKMIRTVKDLLAKQFEMKDLGAANFILGMHIRRDRARRRLWLGQERYIEGILKKFNMTDCKPVGTPMSVGVKLSAEQS 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VV58_TRAPU5.990e-4941.45Retrovirus-related Pol polyprotein from transposon... [more]
W7TII5_9STRA2.150e-4741.26Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
H3H934_PHYRM6.050e-4737.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8D8HJI9_CULPI1.090e-4641.45Copia protein n=1 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A8D9B1F5_9HEMI1.110e-4639.32Copia protein n=1 Tax=Cacopsylla melanoneura TaxID... [more]
A0A146HMH3_MYCCL2.100e-4640.66Polyprotein (Fragment) n=1 Tax=Mycena chlorophos T... [more]
W7TCB8_9STRA2.190e-4642.15Gag-pol polyprotein n=3 Tax=Nannochloropsis gadita... [more]
W7TJ26_9STRA3.740e-4642.79Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
H3H8P6_PHYRM4.270e-4636.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C91A6837.100e-4636.82hypothetical protein n=1 Tax=Modestobacter lapidis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..227
e-value: 1.0E-51
score: 176.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..165
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54310contigH-paniculata_contig54310:45..767 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54310.12882.1mRNA_H-paniculata_contig54310.12882.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig54310 45..767 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig54310.12882.1 ID=prot_H-paniculata_contig54310.12882.1|Name=mRNA_H-paniculata_contig54310.12882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFS
LASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRN
SLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAV
YFDDLVIAGRREKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTI
NISQASYIREVLKRYGFDECRGVPTPAEGKVKISAPESADK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like