mRNA_H-paniculata_contig54310.12882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 168 bits (425), Expect = 2.150e-47 Identity = 92/223 (41.26%), Postives = 133/223 (59.64%), Query Frame = 1
Query: 25 DGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRD-VPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGR-REKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEG 687
+G + R KAR +A+G+SQ D T APVA ++T+R + ++A D EL MD+D AYL + EE ++VK PP + + V RLR SLYGLKQSGRNW+ ++ + G G S+ D CLY GE L++ +Y DDL+IAG R+ VD+ K IS+ MKD L +LG+ ++R+R + ISQ +YI +L ++ +C+ V TP EG
Sbjct: 31 NGIIVRRKARFIAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEM-LVIVLYVDDLIIAGNSRDMVDDFKQAISKEISMKDLKELDWILGMAIKRNREKRFMEISQTAYIDMMLAKFKMADCKPVLTPMEG 252
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM) HSP 1 Score: 166 bits (421), Expect = 6.050e-47 Identity = 88/236 (37.29%), Postives = 145/236 (61.44%), Query Frame = 1
Query: 1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVP-FVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREKV-DELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKIS 702
+F+ K + G + R+KARLVA+GFSQ D ET APVA +++R V SLA++Y +L MD+ A+LN +E +++ P + D P V +L+ SLYGLKQS R WN T++DF++ +G + +D C+Y RD G+ + VA+Y DDLV+A +++ + KH +S+ M D G L LG+E++ DR +G + + Q +++ +L ++G + + V TP + +K++
Sbjct: 34 VFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLT 265
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A8D8HJI9_CULPI (Copia protein n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8HJI9_CULPI) HSP 1 Score: 171 bits (433), Expect = 1.090e-46 Identity = 97/234 (41.45%), Postives = 137/234 (58.55%), Query Frame = 1
Query: 1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREK-VDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKI 699
+FK K DG+V RYKARLVARGF+Q D ET +PVA M+TLR + +LA+ + L MD+ A+LN +E +++ PP F R V +L S+YGLKQS RNWN +D++ +G RS D CLY + DG T +L+ Y DD++IAG K + LK +S MKD LG+ + RDR G++ I Q +Y VLKR+G + C+ P P + ++K+
Sbjct: 52 VFKVKKNGDGTVERYKARLVARGFTQRAGFDFSETYSPVAKMATLRILLALANHEGWHLHQMDVKCAFLNGSLDEDIYMCQPPGFE---RGKDLVCKLNRSIYGLKQSSRNWNRRFDDYVTKLGFKRSQHDLCLYHWKADGVVTYMLI--YVDDILIAGNDLKAIRALKGKLSTEFEMKDMEEAKIFLGLRIDRDRKAGSMTIDQKAYTLGVLKRFGMENCKSSPVPMQPRLKL 280
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A8D9B1F5_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9B1F5_9HEMI) HSP 1 Score: 171 bits (434), Expect = 1.110e-46 Identity = 92/234 (39.32%), Postives = 141/234 (60.26%), Query Frame = 1
Query: 1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIA-GRREKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKI 699
+F++K +G++ ++KARLVA+GF Q D E APVA +ST+RTV ++A+ D L MD+ A+LN EE +++ P ++ + + V +L SLYGLKQS R WN NDF+V G +RS D CLYS ++G V +Y DDL++ K+ +K+ + + +M DFG L LGIE+ RD GT+++SQ YI ++L R+ +C+GV TP E +++
Sbjct: 70 VFQKKFNSEGNIEKFKARLVAKGFQQRRGIDYDEIFAPVAKLSTIRTVLAIANHKDLFLHQMDVKTAFLNGVLEEEIYMYQPEGYNSVNSGM--VCKLNKSLYGLKQSPRCWNKRFNDFMVTSGFERSKNDYCLYSRFEEG--LTFYVILYVDDLILCCNDLNKIQNMKNRLCKEFKMTDFGKLKFFLGIEIERDEEKGTLSMSQKQYILKLLDRFQMTDCKGVNTPMEKGLQL 299
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A146HMH3_MYCCL (Polyprotein (Fragment) n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HMH3_MYCCL) HSP 1 Score: 175 bits (443), Expect = 2.100e-46 Identity = 98/241 (40.66%), Postives = 145/241 (60.17%), Query Frame = 1
Query: 1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAP--AEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRR-EKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKISAPES 714
+FK K G+V RYKARLVA+GFSQV D ++ APVA ++++R V + A+E D+E+ +D+ AYLN A+E ++++ PP F P V L +LYGLKQSGR W L + +G +R D ++ R+DG +V V+ DD +A +R E+V LK ++ Y + D G + +LGIEV+RDR TI++SQ +YI +L+RYG DE + V TP E +S+ +S
Sbjct: 1014 VFKAKKDSAGNVVRYKARLVAQGFSQVPGVDYYDVYAPVAKLASIRAVLAKAAELDWEIHQVDIKGAYLNGELQADEQIYMRQPPGF-PEPNSAGKVCHLLKTLYGLKQSGRRWYQRLVEIFTAMGFERCECDHGVFFQREDGAVV-CVVVVHVDDCTVAAKRLERVQSLKKDMGTYVDVSDLGEIHWILGIEVKRDRAARTIHLSQRAYIDSILRRYGLDELKPVSTPMETSANLSSSQS 1252
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 169 bits (428), Expect = 2.190e-46 Identity = 94/223 (42.15%), Postives = 132/223 (59.19%), Query Frame = 1
Query: 25 DGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPF-SRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGR-REKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEG 687
+G + R KAR +A+G+SQ D T APVA ++T+R V +LA D EL MD++ AYL + EE ++VK PP + + S V RLR SLYGLKQSGRNW+ ++ + G G S+ D CLY GE L++ +Y DDL+I RE V + KH IS+ MKD L +LG+ ++RDR + ISQ +YI +L ++ +C+ V TP EG
Sbjct: 31 NGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEI-LVIVLYVDDLIITSNSREMVGKFKHAISREFSMKDLKELDWILGMAIKRDRGKRVMEISQTAYIDMMLAKFRMADCKPVLTPMEG 252
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 172 bits (437), Expect = 3.740e-46 Identity = 95/222 (42.79%), Postives = 132/222 (59.46%), Query Frame = 1
Query: 28 GSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDV-PFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGR-REKVDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEG 687
G + R KAR +A+G+SQ D T APVA M+T+R V +LA D EL MD+D AYL + EE +++K PP + + + V RLR SLYGLKQSGRNW+ ++ + G GL S D CLY GE L++ +Y DDL+I R D+ K +IS+ MKD L +LG+ ++R+R N T+ ISQ YI +L ++G +C+ V TP EG
Sbjct: 252 GVIVRRKARFIAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGEI-LVIVLYVDDLIIGSNSRTMTDKFKQDISREFSMKDLKELDWILGMGIKRNRENRTMEISQTGYIGMMLNKFGMADCKSVLTPMEG 472
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: H3H8P6_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8P6_PHYRM) HSP 1 Score: 164 bits (416), Expect = 4.270e-46 Identity = 87/236 (36.86%), Postives = 144/236 (61.02%), Query Frame = 1
Query: 1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVP-FVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREKV-DELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKIS 702
+F+ K + G + R+KARLVA+GFSQ D ET APVA +++R V SLA++Y +L MD+ A+LN +E +++ P + D P V +L+ SLYGLKQS R WN T++DF++ +G + +D C+Y RD G+ + VA+Y DDLV+A +++ + KH +S+ M D G L LG+E++ D +G + + Q +++ +L ++G + + V TP + +K++
Sbjct: 73 VFRVKENQAGEIERFKARLVAKGFSQKYDIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLT 304
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: A0A182GR37_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR37_AEDAL) HSP 1 Score: 165 bits (418), Expect = 1.390e-45 Identity = 94/234 (40.17%), Postives = 138/234 (58.97%), Query Frame = 1
Query: 1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVPFVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREK-VDELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKI 699
IFK K +D RYKARLVARGF+Q + D +T +P+A M TLRTV +LA++ + + MD+ A+LN E +++ P F RD V RL+ SLYGLKQ+ R+WN ++F+V +G RS D CLY R G+T +++ +Y DD++IA EK V +K +S M D G + LG+ + RD T+ ISQ Y+ +L R+ +CR + TP E ++K+
Sbjct: 144 IFKLKHSEDNEAPRYKARLVARGFTQKQGFDYSDTYSPLARMDTLRTVLALANQRGWSVHQMDVKCAFLNGELTEEIYMLQPEGFE--QRDG-LVCRLKRSLYGLKQAARSWNERFHNFVVRLGFVRSRNDLCLY--RRGSGDTQVILVIYVDDVLIASGSEKLVGTIKKCLSTEFEMTDVGEVRNFLGMRIDRDAEKKTLRISQRRYLENLLDRFQMRDCRPIATPMENRLKL 372
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Match: H3H9Y1_PHYRM (CCHC-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9Y1_PHYRM) HSP 1 Score: 168 bits (426), Expect = 2.580e-45 Identity = 89/236 (37.71%), Postives = 145/236 (61.44%), Query Frame = 1
Query: 1 IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSLASEYDFELKGMDLDAAYLNAPAEEVLFVKLPPEFSPFSRDVP-FVRRLRNSLYGLKQSGRNWNNTLNDFLVGIGLDRSTTDSCLYSSRDDGGETNLLVAVYFDDLVIAGRREKV-DELKHNISQYSRMKDFGSLSRVLGIEVRRDRPNGTINISQASYIREVLKRYGFDECRGVPTPAEGKVKIS 702
+F+ K + G + R+KARLVA+GFSQ D ET APVA +++R V SLA++Y +L MD+ A+LN +E +++ P + D P V +L+ SLYGLKQS R WN T++DF++ +G + +D C+Y RD G+ + VA+Y DDLV+A +++ D KH +S+ M D G L LG+E++ DR +G + + Q +++ +L ++G + + V TP + +K++
Sbjct: 332 VFRVKENQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGY--VDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLDSTKHALSKRFEMTDLGELEYFLGMEIKNDRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLT 563 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54310.12882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig54310.12882.1 >prot_H-paniculata_contig54310.12882.1 ID=prot_H-paniculata_contig54310.12882.1|Name=mRNA_H-paniculata_contig54310.12882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp IFKRKLKKDGSVARYKARLVARGFSQVEVEDLFETSAPVACMSTLRTVFSback to top mRNA from alignment at H-paniculata_contig54310:45..767- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig54310.12882.1 ID=mRNA_H-paniculata_contig54310.12882.1|Name=mRNA_H-paniculata_contig54310.12882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig54310:45..767- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig54310:45..767- >mRNA_H-paniculata_contig54310.12882.1 ID=mRNA_H-paniculata_contig54310.12882.1|Name=mRNA_H-paniculata_contig54310.12882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig54310:45..767- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |