prot_H-paniculata_contig5423.12870.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5423.12870.1
Unique Nameprot_H-paniculata_contig5423.12870.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length224
Homology
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 7.150e-63
Identity = 113/234 (48.29%), Postives = 155/234 (66.24%), Query Frame = 0
Query:    2 PGGYERKDKK-GVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            P G+E KDK+ G  +VM+L KS+YGL  S  +W   IDP + E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVLG+E+ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct:   49 PPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 276          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 3.950e-61
Identity = 112/232 (48.28%), Postives = 154/232 (66.38%), Query Frame = 0
Query:    2 PGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVY 223
            P G+E KDK G  LVM+L KS+YGL  S  +W   IDPFL E+ F+ +KS +C+ ++   ++       V+LTL+VDDLLL G++   +  +K +LT+RFKM+ MG V LVLG+E+ RDR  GTLTISQE Y+K+++           +TPG G ELS  QPE+ LL E++ +++Q I   ++Y+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRY++GT DF I Y
Sbjct:  587 PPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQ------VYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDFRITY 812          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 7.000e-61
Identity = 114/233 (48.93%), Postives = 154/233 (66.09%), Query Frame = 0
Query:    2 PGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            P G+E KDK G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVLG+E+ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct: 1279 PPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 1505          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 8.700e-58
Identity = 113/246 (45.93%), Postives = 154/246 (62.60%), Query Frame = 0
Query:    2 PGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKL-----KL--------QLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            P G+E KDK G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   ++ L     KL        +L +RFKM+ +G  S  LG+++ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct:  258 PPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 497          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 8.280e-56
Identity = 107/223 (47.98%), Postives = 146/223 (65.47%), Query Frame = 0
Query:   12 GVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVL +E+ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct:  620 GGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 836          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 4.690e-54
Identity = 105/227 (46.26%), Postives = 147/227 (64.76%), Query Frame = 0
Query:    2 PGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVD 218
            P G+E   K G  LVM+L KS+YGL  S  +W   IDPFL E+ F+ ++S +C+ ++   ++       VFLTL+VDDLLL G++  ++  +K +L +R KM+ MG V LVLG+E+ RDR  GTLT SQE Y+K+++           +TPG G ELS  QPE+ LL E++ +++Q I   +MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRY++GT D
Sbjct:  886 PPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQ------VFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTD 1106          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 3.860e-50
Identity = 104/233 (44.64%), Postives = 144/233 (61.80%), Query Frame = 0
Query:    2 PGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            P G+E KDK G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVLG+E+ RDREA TLTISQE Y K+++           +TPG G E+S  QP+  LL+E + +K+Q I  S MY+A   +Y        L+R M+ PSK HM  AK  LR+L GT+DF+I YK
Sbjct: 1444 PPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQY------TWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYK 1664          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.650e-48
Identity = 92/220 (41.82%), Postives = 135/220 (61.36%), Query Frame = 0
Query:   15 LVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            +V +L +S+YGL  S   W+  +D  LT   +   +S  C+ V+TS  I       V LT++VDD+L+ G D+ ++++ K +LT RF+M+ MG V  +LGI+V RD E GTL ISQE+Y   ++           +TPG G E+S NQP++Q+L   D+K +Q +T S++YLAQ  R+D  YA  QLS+  SNP++ +M  AK +LRYL G     IVYK
Sbjct:    1 MVYKLARSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNII------VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYK 214          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 3.580e-47
Identity = 102/233 (43.78%), Postives = 141/233 (60.52%), Query Frame = 0
Query:    2 PGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            PG  ER    G  +V +L KS+YGL  S   W+  I+  L    +   +S  C+ +F S +     E T+ L ++VDD+L+ G +K I+ + K +L   F+M+ MG V  V+GIEV RD E GTL ISQ  Y + ++           +TPG G ELS  QP++QLL  +D+++FQ IT S++YLAQ  RYD  YAV+QL+R  +NP++ HMA AK LLRYL GT D  IVYK
Sbjct:  348 PGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGD-----ELTI-LAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYK 574          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 9.860e-47
Identity = 96/233 (41.20%), Postives = 140/233 (60.09%), Query Frame = 0
Query:    2 PGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 224
            PG   +    G P+V +L +S+YGL  S   W+  +D  LT L +   +S  C+ V+TS  I       V LT++VDD+L+ G D+ ++++ K +LT RF+M+ MG V  +LGI+V RD E GTL ISQE+Y   ++           +TPG G E+S NQP++Q+L   D+K +Q +  S++YLAQ  R+D  YA  QLS+  SNP++ +M  AK +LRYL G     IVYK
Sbjct:  315 PGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNII------VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYK 541          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE7.150e-6348.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE3.950e-6148.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE7.000e-6148.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE8.700e-5845.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE8.280e-5647.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL30_9PHAE4.690e-5446.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J842_9PHAE3.860e-5044.64Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KAK0_9PHAE2.650e-4841.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE3.580e-4743.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE9.860e-4741.20Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..139
e-value: 4.9E-22
score: 78.7
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 72..222
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 72..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5423contigH-paniculata_contig5423:2301..3119 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5423.12870.1mRNA_H-paniculata_contig5423.12870.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5423 2301..3140 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5423.12870.1 ID=prot_H-paniculata_contig5423.12870.1|Name=mRNA_H-paniculata_contig5423.12870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIK
SGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRR
FKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMVANTPGVGPELSI
NQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSK
AHMAVAKRLLRYLSGTVDFNIVYK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like