mRNA_H-paniculata_contig5423.12870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5423.12870.1
Unique NamemRNA_H-paniculata_contig5423.12870.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.060e-64
Identity = 116/240 (48.33%), Postives = 159/240 (66.25%), Query Frame = 1
Query:    7 EVYVRMPGGYERKDKK-GVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            EV+V  P G+E KDK+ G  +VM+L KS+YGL  S  +W   IDP + E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVLG+E+ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct:   43 EVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 276          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 1.630e-62
Identity = 117/239 (48.95%), Postives = 158/239 (66.11%), Query Frame = 1
Query:    7 EVYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            EV+V  P G+E KDK G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVLG+E+ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct: 1273 EVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 1505          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 3.740e-62
Identity = 114/237 (48.10%), Postives = 157/237 (66.24%), Query Frame = 1
Query:   10 VYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVY 690
            V+V  P G+E KDK G  LVM+L KS+YGL  S  +W   IDPFL E+ F+ +KS +C+ ++   ++       V+LTL+VDDLLL G++   +  +K +LT+RFKM+ MG V LVLG+E+ RDR  GTLTISQE Y+K+++           +TPG G ELS  QPE+ LL E++ +++Q I   ++Y+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRY++GT DF I Y
Sbjct:  582 VFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQ------VYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDFRITY 812          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.470e-59
Identity = 116/252 (46.03%), Postives = 158/252 (62.70%), Query Frame = 1
Query:    7 EVYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKL-----KL--------QLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            EV+V  P G+E KDK G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   ++ L     KL        +L +RFKM+ +G  S  LG+++ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct:  252 EVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 497          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.000e-55
Identity = 107/223 (47.98%), Postives = 146/223 (65.47%), Query Frame = 1
Query:   55 GVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVL +E+ RDREA TLTISQE Y K+++           +TPG G E+S  QPE+ LL+E + +K+Q I  S+MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRYL+GT+DF+I YK
Sbjct:  620 GGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 836          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.750e-54
Identity = 107/232 (46.12%), Postives = 149/232 (64.22%), Query Frame = 1
Query:   10 VYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVD 675
            V V  P G+E   K G  LVM+L KS+YGL  S  +W   IDPFL E+ F+ ++S +C+ ++   ++       VFLTL+VDDLLL G++  ++  +K +L +R KM+ MG V LVLG+E+ RDR  GTLT SQE Y+K+++           +TPG G ELS  QPE+ LL E++ +++Q I   +MY+AQ LRYD MYA  QL+R M+ PSK HM  AK  LRY++GT D
Sbjct:  881 VLVEQPPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQ------VFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTD 1106          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 8.930e-52
Identity = 107/239 (44.77%), Postives = 148/239 (61.92%), Query Frame = 1
Query:    7 EVYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            EV+V  P G+E KDK G  +VM+L KS+YGL  S  +W   IDP L E+ F+A+KS  C+ ++            ++LTL+VDDLLL G+D   +  +K +L +RFKM+ +G  SLVLG+E+ RDREA TLTISQE Y K+++           +TPG G E+S  QP+  LL+E + +K+Q I  S MY+A   +Y        L+R M+ PSK HM  AK  LR+L GT+DF+I YK
Sbjct: 1438 EVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQY------TWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYK 1664          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.300e-48
Identity = 107/241 (44.40%), Postives = 147/241 (61.00%), Query Frame = 1
Query:    4 REVYVR-MPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            R+VYVR  PG  ER    G  +V +L KS+YGL  S   W+  I+  L    +   +S  C+ +F S +     E T+ L ++VDD+L+ G +K I+ + K +L   F+M+ MG V  V+GIEV RD E GTL ISQ  Y + ++           +TPG G ELS  QP++QLL  +D+++FQ IT S++YLAQ  RYD  YAV+QL+R  +NP++ HMA AK LLRYL GT D  IVYK
Sbjct:  340 RDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGD-----ELTI-LAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYK 574          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 3.510e-48
Identity = 101/241 (41.91%), Postives = 146/241 (60.58%), Query Frame = 1
Query:    4 REVYVR-MPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            R+VYVR  PG   +    G P+V +L +S+YGL  S   W+  +D  LT L +   +S  C+ V+TS  I       V LT++VDD+L+ G D+ ++++ K +LT RF+M+ MG V  +LGI+V RD E GTL ISQE+Y   ++           +TPG G E+S NQP++Q+L   D+K +Q +  S++YLAQ  R+D  YA  QLS+  SNP++ +M  AK +LRYL G     IVYK
Sbjct:  307 RDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNII------VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYK 541          
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 4.750e-48
Identity = 92/220 (41.82%), Postives = 135/220 (61.36%), Query Frame = 1
Query:   64 LVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
            +V +L +S+YGL  S   W+  +D  LT   +   +S  C+ V+TS  I       V LT++VDD+L+ G D+ ++++ K +LT RF+M+ MG V  +LGI+V RD E GTL ISQE+Y   ++           +TPG G E+S NQP++Q+L   D+K +Q +T S++YLAQ  R+D  YA  QLS+  SNP++ +M  AK +LRYL G     IVYK
Sbjct:    1 MVYKLARSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNII------VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYK 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE1.060e-6448.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.630e-6248.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE3.740e-6248.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE1.470e-5946.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.000e-5547.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL30_9PHAE1.750e-5446.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J842_9PHAE8.930e-5244.77Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JF46_9PHAE1.300e-4844.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE3.510e-4841.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE4.750e-4841.82Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5423contigH-paniculata_contig5423:2301..3140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score116.7
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog7425.NV19133-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons2
Model size693
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5423.12870.1prot_H-paniculata_contig5423.12870.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5423 2301..3119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.6358144-CDS-H-paniculata_contig5423:2300..25531622930558.6358144-CDS-H-paniculata_contig5423:2300..2553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 2301..2553 -
1691481347.6609907-CDS-H-paniculata_contig5423:2300..25531691481347.6609907-CDS-H-paniculata_contig5423:2300..2553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 2301..2553 -
1622930558.6496847-CDS-H-paniculata_contig5423:2700..31191622930558.6496847-CDS-H-paniculata_contig5423:2700..3119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 2701..3119 -
1691481347.6730149-CDS-H-paniculata_contig5423:2700..31191691481347.6730149-CDS-H-paniculata_contig5423:2700..3119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5423 2701..3119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.6617355-UTR-H-paniculata_contig5423:3119..31401622930558.6617355-UTR-H-paniculata_contig5423:3119..3140Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5423 3120..3140 -
1691481347.6827838-UTR-H-paniculata_contig5423:3119..31401691481347.6827838-UTR-H-paniculata_contig5423:3119..3140Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5423 3120..3140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5423.12870.1

>prot_H-paniculata_contig5423.12870.1 ID=prot_H-paniculata_contig5423.12870.1|Name=mRNA_H-paniculata_contig5423.12870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIK
SGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRR
FKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMVANTPGVGPELSI
NQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSK
AHMAVAKRLLRYLSGTVDFNIVYK
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mRNA from alignment at H-paniculata_contig5423:2301..3140-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5423.12870.1 ID=mRNA_H-paniculata_contig5423.12870.1|Name=mRNA_H-paniculata_contig5423.12870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=840bp|location=Sequence derived from alignment at H-paniculata_contig5423:2301..3140- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCGGGAGGTGTACGTGAGGATGCCTGGAGGCTACGAGCGCAAGGACAA GAAGGGGGTTCCACTTGTAATGAGGCTTTGCAAGTCCATGTACGGCTTAA GGCATTCACTCAAACATTGGCACGGGATCATCGACCCCTTCCTCACGGAG CTCGATTTTATGGCGATCAAGTCGGGCTCCTGCCTCTGCGTCTTCACCAG CAAGGAAATCGCAACCAAACCGGAAACTACGGTCTTCCTCACCCTTTTTG TGGACGATTTACTTTTGCTCGGCTCGGATAAGGGAATCCTCGAGAAACTC AAGCTACAATTGACGAGGCGTTTCAAGATGTCGGGTATGGGCAACGTATC GCTCGTGCTGGGAATAGAGGTGTCTAGGGACCGCGAGGCAGGGACGCTGA CCATTAGCCAGGAGAACTACACCAAGGCGATGGTGGCCAAGTACAGTGTG TAGGGGTGCAACCTCCCGCTCGTGCTGGGAATAGAGGTGTCTAGGGACCG CGAGGCAGGGACGCTGACCATCAGCCAGGAGAACTACACCAAGGCGATGG TGGCCAAGTACAGTGTATAGGGGTGCAACCTCCCGAGCACACCCGGCGTC GGGCCGGAGCTTTCAATCAACCAACCGGAGGAGCAACTTCTGGAAGAGGA CGACCAGAAGAAGTTCCAGGAGATCACGGCGTCAGTTATGTACCTGGCAC AGACCCTCCGCTACGACACCATGTACGCCGTCAACCAGCTGTCGCGGGAG ATGTCAAACCCTTCCAAGGCGCACATGGCGGTGGCCAAGCGCCTTCTTCG CTACCTATCGGGCACCGTGGACTTCAACATCGTCTACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5423:2301..3140-

>mRNA_H-paniculata_contig5423.12870.1 ID=mRNA_H-paniculata_contig5423.12870.1|Name=mRNA_H-paniculata_contig5423.12870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig5423:2301..3140- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGGAGGCTACGAGCGCAAGGACAAGAAGGGGGTTCCACTTGTAAT
GAGGCTTTGCAAGTCCATGTACGGCTTAAGGCATTCACTCAAACATTGGC
ACGGGATCATCGACCCCTTCCTCACGGAGCTCGATTTTATGGCGATCAAG
TCGGGCTCCTGCCTCTGCGTCTTCACCAGCAAGGAAATCGCAACCAAACC
GGAAACTACGGTCTTCCTCACCCTTTTTGTGGACGATTTACTTTTGCTCG
GCTCGGATAAGGGAATCCTCGAGAAACTCAAGCTACAATTGACGAGGCGT
TTCAAGATGTCGGGTATGGGCAACGTATCGCTCGTGCTGGGAATAGAGGT
GTCTAGGGACCGCGAGGCAGGGACGCTGACCATTAGCCAGGAGAACTACA
CCAAGGCGATGGTGGCCAAATGCCTGGAGGCTACGAGCGCAAGGACAAGA
AGGGGGTTCCACTTGTAATGAGGCTTTGCAAGTCCATGTACGGCTTAAGG
CATTCACTCAAACATTGGCACGGGATCATCGACCCCTTCCTCACGGAGCT
CGATTTTATGGCGATCAAGTCGGGCTCCTGCCTCTGCGTCTTCACCAGCA
AGGAAATCGCAACCAAACCGGAAACTACGGTCTTCCTCACCCTTTTTGTG
GACGATTTACTTTTGCTCGGCTCGGATAAGGGAATCCTCGAGAAACTCAA
GCTACAATTGACGAGGCGTTTCAAGATGTCGGGTATGGGCAACGTATCGC
TCGTGCTGGGAATAGAGGTGTCTAGGGACCGCGAGGCAGGGACGCTGACC
ATTAGCCAGGAGAACTACACCAAGGCGATGGTGGCCAACACACCCGGCGT
CGGGCCGGAGCTTTCAATCAACCAACCGGAGGAGCAACTTCTGGAAGAGG
ACGACCAGAAGAAGTTCCAGGAGATCACGGCGTCAGTTATGTACCTGGCA
CAGACCCTCCGCTACGACACCATGTACGCCGTCAACCAGCTGTCGCGGGA
GATGTCAAACCCTTCCAAGGCGCACATGGCGGTGGCCAAGCGCCTTCTTC
GCTACCTATCGGGCACCGTGGACTTCAACATCGTCTACAAGCACACCCGG
CGTCGGGCCGGAGCTTTCAATCAACCAACCGGAGGAGCAACTTCTGGAAG
AGGACGACCAGAAGAAGTTCCAGGAGATCACGGCGTCAGTTATGTACCTG
GCACAGACCCTCCGCTACGACACCATGTACGCCGTCAACCAGCTGTCGCG
GGAGATGTCAAACCCTTCCAAGGCGCACATGGCGGTGGCCAAGCGCCTTC
TTCGCTACCTATCGGGCACCGTGGACTTCAACATCGTCTACAAG
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