mRNA_H-paniculata_contig5423.12870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 216 bits (550), Expect = 1.060e-64 Identity = 116/240 (48.33%), Postives = 159/240 (66.25%), Query Frame = 1
Query: 7 EVYVRMPGGYERKDKK-GVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
EV+V P G+E KDK+ G +VM+L KS+YGL S +W IDP + E+ F+A+KS C+ ++ ++LTL+VDDLLL G+D + +K +L +RFKM+ +G SLVLG+E+ RDREA TLTISQE Y K+++ +TPG G E+S QPE+ LL+E + +K+Q I S+MY+AQ LRYD MYA QL+R M+ PSK HM AK LRYL+GT+DF+I YK
Sbjct: 43 EVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 276
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 221 bits (562), Expect = 1.630e-62 Identity = 117/239 (48.95%), Postives = 158/239 (66.11%), Query Frame = 1
Query: 7 EVYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
EV+V P G+E KDK G +VM+L KS+YGL S +W IDP L E+ F+A+KS C+ ++ ++LTL+VDDLLL G+D + +K +L +RFKM+ +G SLVLG+E+ RDREA TLTISQE Y K+++ +TPG G E+S QPE+ LL+E + +K+Q I S+MY+AQ LRYD MYA QL+R M+ PSK HM AK LRYL+GT+DF+I YK
Sbjct: 1273 EVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 1505
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 217 bits (553), Expect = 3.740e-62 Identity = 114/237 (48.10%), Postives = 157/237 (66.24%), Query Frame = 1
Query: 10 VYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVY 690
V+V P G+E KDK G LVM+L KS+YGL S +W IDPFL E+ F+ +KS +C+ ++ ++ V+LTL+VDDLLL G++ + +K +LT+RFKM+ MG V LVLG+E+ RDR GTLTISQE Y+K+++ +TPG G ELS QPE+ LL E++ +++Q I ++Y+AQ LRYD MYA QL+R M+ PSK HM AK LRY++GT DF I Y
Sbjct: 582 VFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQ------VYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDFRITY 812
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.470e-59 Identity = 116/252 (46.03%), Postives = 158/252 (62.70%), Query Frame = 1
Query: 7 EVYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKL-----KL--------QLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
EV+V P G+E KDK G +VM+L KS+YGL S +W IDP L E+ F+A+KS C+ ++ ++LTL+VDDLLL G+D ++ L KL +L +RFKM+ +G S LG+++ RDREA TLTISQE Y K+++ +TPG G E+S QPE+ LL+E + +K+Q I S+MY+AQ LRYD MYA QL+R M+ PSK HM AK LRYL+GT+DF+I YK
Sbjct: 252 EVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 497
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.000e-55 Identity = 107/223 (47.98%), Postives = 146/223 (65.47%), Query Frame = 1
Query: 55 GVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
G +VM+L KS+YGL S +W IDP L E+ F+A+KS C+ ++ ++LTL+VDDLLL G+D + +K +L +RFKM+ +G SLVL +E+ RDREA TLTISQE Y K+++ +TPG G E+S QPE+ LL+E + +K+Q I S+MY+AQ LRYD MYA QL+R M+ PSK HM AK LRYL+GT+DF+I YK
Sbjct: 620 GGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYK 836
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE) HSP 1 Score: 197 bits (502), Expect = 1.750e-54 Identity = 107/232 (46.12%), Postives = 149/232 (64.22%), Query Frame = 1
Query: 10 VYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVD 675
V V P G+E K G LVM+L KS+YGL S +W IDPFL E+ F+ ++S +C+ ++ ++ VFLTL+VDDLLL G++ ++ +K +L +R KM+ MG V LVLG+E+ RDR GTLT SQE Y+K+++ +TPG G ELS QPE+ LL E++ +++Q I +MY+AQ LRYD MYA QL+R M+ PSK HM AK LRY++GT D
Sbjct: 881 VLVEQPPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQ------VFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTD 1106
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 190 bits (482), Expect = 8.930e-52 Identity = 107/239 (44.77%), Postives = 148/239 (61.92%), Query Frame = 1
Query: 7 EVYVRMPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
EV+V P G+E KDK G +VM+L KS+YGL S +W IDP L E+ F+A+KS C+ ++ ++LTL+VDDLLL G+D + +K +L +RFKM+ +G SLVLG+E+ RDREA TLTISQE Y K+++ +TPG G E+S QP+ LL+E + +K+Q I S MY+A +Y L+R M+ PSK HM AK LR+L GT+DF+I YK
Sbjct: 1438 EVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNG------AKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQY------TWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYK 1664
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.300e-48 Identity = 107/241 (44.40%), Postives = 147/241 (61.00%), Query Frame = 1
Query: 4 REVYVR-MPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
R+VYVR PG ER G +V +L KS+YGL S W+ I+ L + +S C+ +F S + E T+ L ++VDD+L+ G +K I+ + K +L F+M+ MG V V+GIEV RD E GTL ISQ Y + ++ +TPG G ELS QP++QLL +D+++FQ IT S++YLAQ RYD YAV+QL+R +NP++ HMA AK LLRYL GT D IVYK
Sbjct: 340 RDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGD-----ELTI-LAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYK 574
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 177 bits (450), Expect = 3.510e-48 Identity = 101/241 (41.91%), Postives = 146/241 (60.58%), Query Frame = 1
Query: 4 REVYVR-MPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
R+VYVR PG + G P+V +L +S+YGL S W+ +D LT L + +S C+ V+TS I V LT++VDD+L+ G D+ ++++ K +LT RF+M+ MG V +LGI+V RD E GTL ISQE+Y ++ +TPG G E+S NQP++Q+L D+K +Q + S++YLAQ R+D YA QLS+ SNP++ +M AK +LRYL G IVYK
Sbjct: 307 RDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNII------VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYK 541
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 168 bits (426), Expect = 4.750e-48 Identity = 92/220 (41.82%), Postives = 135/220 (61.36%), Query Frame = 1
Query: 64 LVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKSGSCLCVFTSKEIATKPETTVFLTLFVDDLLLLGSDKGILEKLKLQLTRRFKMSGMGNVSLVLGIEVSRDREAGTLTISQENYTKAMV----------ANTPGVGPELSINQPEEQLLEEDDQKKFQEITASVMYLAQTLRYDTMYAVNQLSREMSNPSKAHMAVAKRLLRYLSGTVDFNIVYK 693
+V +L +S+YGL S W+ +D LT + +S C+ V+TS I V LT++VDD+L+ G D+ ++++ K +LT RF+M+ MG V +LGI+V RD E GTL ISQE+Y ++ +TPG G E+S NQP++Q+L D+K +Q +T S++YLAQ R+D YA QLS+ SNP++ +M AK +LRYL G IVYK
Sbjct: 1 MVYKLARSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNII------VILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYK 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5423.12870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5423.12870.1 >prot_H-paniculata_contig5423.12870.1 ID=prot_H-paniculata_contig5423.12870.1|Name=mRNA_H-paniculata_contig5423.12870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp MPGGYERKDKKGVPLVMRLCKSMYGLRHSLKHWHGIIDPFLTELDFMAIKback to top mRNA from alignment at H-paniculata_contig5423:2301..3140- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5423.12870.1 ID=mRNA_H-paniculata_contig5423.12870.1|Name=mRNA_H-paniculata_contig5423.12870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=840bp|location=Sequence derived from alignment at H-paniculata_contig5423:2301..3140- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5423:2301..3140- >mRNA_H-paniculata_contig5423.12870.1 ID=mRNA_H-paniculata_contig5423.12870.1|Name=mRNA_H-paniculata_contig5423.12870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig5423:2301..3140- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |