prot_H-paniculata_contig542.12864.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig542.12864.1
Unique Nameprot_H-paniculata_contig542.12864.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length225
Homology
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BLAST of mRNA_H-paniculata_contig542.12864.1 vs. uniprot
Match: A0A6H5KI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI88_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.040e-6
Identity = 36/86 (41.86%), Postives = 44/86 (51.16%), Query Frame = 0 
Query:   10 LLLGLS-----SSANACL-IQDAQYSCTPGSTKIDLSGCGITDTNIDDLTDCFIFAGQGLVQEVILDDNELTELPYDFFDGLTALE 89
            +LLGLS     S+ N CL   DA          +DLS CGITD + DDL  C   AG   +  + L +NELT LP   F  LT L+
Sbjct:    8 ILLGLSTLLNTSAVNVCLDTTDAGNCQIEAGETLDLSDCGITDADFDDLASCLEAAGPEAITTLFLYENELTTLPEGIFGSLTGLQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig542.12864.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KI88_9PHAE1.040e-641.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 110..132
e-value: 29.0
score: 9.5
coord: 85..108
e-value: 0.012
score: 24.8
coord: 62..84
e-value: 230.0
score: 2.1
coord: 133..156
e-value: 0.019
score: 24.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 16..184
e-value: 3.9E-28
score: 99.8
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 65..122
e-value: 1.1E-10
score: 41.1
NoneNo IPR availablePANTHERPTHR16083:SF23FI16115P1coord: 68..150
NoneNo IPR availablePANTHERPTHR16083:SF23FI16115P1coord: 68..175
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 68..175
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 68..150
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..224
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.89
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 32..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig542contigH-paniculata_contig542:18796..24712 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig542.12864.1mRNA_H-paniculata_contig542.12864.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig542 18690..25872 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig542.12864.1 ID=prot_H-paniculata_contig542.12864.1|Name=mRNA_H-paniculata_contig542.12864.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MMRVACPLALLLGLSSSANACLIQDAQYSCTPGSTKIDLSGCGITDTNID
DLTDCFIFAGQGLVQEVILDDNELTELPYDFFDGLTALERVDLSANELVT
LPQQLFASNANLKELVMFNNDISALPLGVFGGLVNLELLELEDNELTTLP
FGLFNDLDSLQLLTLFGNDDLQCLPTLSDSVELELPTDFDPTDLGNICEC
PAEGVDCFEGLFCFPGADGWRCRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt